mRNA_E_fasciculatus_S2_contig9221.17284.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9221.17284.1
Unique NamemRNA_E_fasciculatus_S2_contig9221.17284.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9221.17284.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9221contigE_fasciculatus_S2_contig9221:767..1592 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size701
Hectar predicted targeting categoryother localisation
Exons2
Cds size630
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842572.3343709-CDS-E_fasciculatus_S2_contig9221:766..8951696842572.3343709-CDS-E_fasciculatus_S2_contig9221:766..895Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9221 767..895 +
1696842572.3442266-CDS-E_fasciculatus_S2_contig9221:1020..15211696842572.3442266-CDS-E_fasciculatus_S2_contig9221:1020..1521Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9221 1021..1521 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842572.363073-UTR-E_fasciculatus_S2_contig9221:1521..15921696842572.363073-UTR-E_fasciculatus_S2_contig9221:1521..1592Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9221 1522..1592 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9221.17284.1prot_E_fasciculatus_S2_contig9221.17284.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9221 767..1521 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9221.17284.1

>prot_E_fasciculatus_S2_contig9221.17284.1 ID=prot_E_fasciculatus_S2_contig9221.17284.1|Name=mRNA_E_fasciculatus_S2_contig9221.17284.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=210bp
VVQAGTGNSDVKSRAGRCASCRDARPTGYVCGRGWGAGGRSRRSCSSEHW
TSRQQSSARTIFRLQTRSSCWVCVYDAGGRLEEAEELFKRALDIQKAKLG
PNDLVAGQTLYQLGLCAHDAGGRLGEAEDFFKLALEIEKTMLGEDDPRVA
RTLSVLCVCVQGRGASGEGGRVTQASSGYPDSKARTGRSQGCKHDCPAEF
VHSTGADGR*
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mRNA from alignment at E_fasciculatus_S2_contig9221:767..1592+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9221.17284.1 ID=mRNA_E_fasciculatus_S2_contig9221.17284.1|Name=mRNA_E_fasciculatus_S2_contig9221.17284.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=826bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9221:767..1592+ (Ectocarpus fasciculatus EfasUO2)
GTTGTTCAAGCGGGCACTGGAAATTCTGACGTGAAATCTCGGGCCGGACG
ATGTGCAAGTTGCAGAGACGCTCGCCCGACTGGGTATGTGTGTGGACGAG
GCTGGGGGGCGGGTGGGAGAAGCAGAAGAGTTGTTCAAGCGAGCACTGGA
CATCCAGACGGCAAAGCTCACGACGGACGATCAGAGGCATGAAATGACGC
TCCCCGTGCTGGGTCTTCATATGAAGGAGGCGGGACGGCTGGGGGTGGCA
CAAGAGTTGTTCAAGCGAGCACTGGACATCCAGACAGCAAAGCTCAGCCC
GAACGATTTTCAGGTTGCAGACACGCTCTTCTTGCTGGGTATGTGTGTAC
GACGCCGGGGGGCGGCTAGAAGAGGCGGAAGAATTGTTCAAGCGGGCGTT
GGATATCCAGAAGGCAAAACTCGGGCCGAACGATCTGGTGGCTGGACAAA
CGTTGTACCAACTGGGTTTGTGTGCGCACGACGCTGGAGGGAGGCTTGGG
GAGGCGGAAGATTTCTTCAAGCTAGCCTTGGAAATCGAGAAAACGATGCT
CGGGGAGGACGATCCGCGGGTTGCACGCACACTTAGCGTGCTGTGTGTGT
GTGTGCAAGGCCGGGGGGCGTCTGGGGAAGGCGGAAGAGTTACTCAAGCG
AGCAGTGGATATCCAGACAGCAAAGCTCGGACCGGACGATCCCAGGGTTG
CAAACACGATTGTCCTGCTGAATTTGTTCACAGTACTGGCGCAGACGGTC
GTTGAATAGTATACATGATACGTGGGGGGGTCGTACAGGAGGAAACACGT
ATAACAACAAACAGTGGGGAGGCTGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9221:767..1592+

>mRNA_E_fasciculatus_S2_contig9221.17284.1 ID=mRNA_E_fasciculatus_S2_contig9221.17284.1|Name=mRNA_E_fasciculatus_S2_contig9221.17284.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=630bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9221:767..1592+ (Ectocarpus fasciculatus EfasUO2)
GTTGTTCAAGCGGGCACTGGAAATTCTGACGTGAAATCTCGGGCCGGACG
ATGTGCAAGTTGCAGAGACGCTCGCCCGACTGGGTATGTGTGTGGACGAG
GCTGGGGGGCGGGTGGGAGAAGCAGAAGAAGTTGTTCAAGCGAGCACTGG
ACATCCAGACAGCAAAGCTCAGCCCGAACGATTTTCAGGTTGCAGACACG
CTCTTCTTGCTGGGTATGTGTGTACGACGCCGGGGGGCGGCTAGAAGAGG
CGGAAGAATTGTTCAAGCGGGCGTTGGATATCCAGAAGGCAAAACTCGGG
CCGAACGATCTGGTGGCTGGACAAACGTTGTACCAACTGGGTTTGTGTGC
GCACGACGCTGGAGGGAGGCTTGGGGAGGCGGAAGATTTCTTCAAGCTAG
CCTTGGAAATCGAGAAAACGATGCTCGGGGAGGACGATCCGCGGGTTGCA
CGCACACTTAGCGTGCTGTGTGTGTGTGTGCAAGGCCGGGGGGCGTCTGG
GGAAGGCGGAAGAGTTACTCAAGCGAGCAGTGGATATCCAGACAGCAAAG
CTCGGACCGGACGATCCCAGGGTTGCAAACACGATTGTCCTGCTGAATTT
GTTCACAGTACTGGCGCAGACGGTCGTTGA
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