mRNA_E_fasciculatus_S2_contig922.17282.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E_fasciculatus_S2_contig922.17282.1
Unique Name	mRNA_E_fasciculatus_S2_contig922.17282.1
Type	mRNA
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig922.17282.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXJ4_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 1.310e-34
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 2

Query:    2 WTSEEHDAFLRGVRRFKRNNWVGIATLLPTRTVLQIRTHAQKYYAKVDKGEPFPDEV 172
            WTSEEH AFLRGVRRFKRNNWVGIATLLPTRTVLQIRTHAQKYYAKVDKGEPFPDEV
Sbjct:   15 WTSEEHHAFLRGVRRFKRNNWVGIATLLPTRTVLQIRTHAQKYYAKVDKGEPFPDEV 71

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BLAST of mRNA_E_fasciculatus_S2_contig922.17282.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L149_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 8.220e-31
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 2

Query:    2 WTSEEHDAFLRGVRRFKRNNWVGIATLLPTRTVLQIRTHAQKYYAKVDKGEPFPDE 169
            WTSEEHDAFLRGVRRFKRNNWVGIATLLPTRTVLQIRTHAQKYYAKVDKGEPFPDE
Sbjct:   10 WTSEEHDAFLRGVRRFKRNNWVGIATLLPTRTVLQIRTHAQKYYAKVDKGEPFPDE 65

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BLAST of mRNA_E_fasciculatus_S2_contig922.17282.1 vs.
Match: HTH (myb-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXQ4_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 6.120e-19
Identity = 38/56 (67.86%), Postives = 47/56 (83.93%), Query Frame = 2

Query:    2 WTSEEHDAFLRGVRRFKRNNWVGIATLLPTRTVLQIRTHAQKYYAKVDKGEPFPDE 169
            WT EEH  FLRGV  FKR++   +A++LPTRT+LQ+RTHAQKY+ KVDKGEPFP+E
Sbjct:   10 WTHEEHAEFLRGVELFKRSDLEAVASMLPTRTILQVRTHAQKYFDKVDKGEPFPNE 65

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig922.17282.1 vs.
Match: HTH (myb-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVV5_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.520e-18
Identity = 38/56 (67.86%), Postives = 46/56 (82.14%), Query Frame = 2

Query:    2 WTSEEHDAFLRGVRRFKRNNWVGIATLLPTRTVLQIRTHAQKYYAKVDKGEPFPDE 169
            WT EEH  FLRGV  FKR++   +A++LPTRT+LQ+RTHAQKY+ KVDKGEPFP E
Sbjct:   10 WTHEEHAVFLRGVELFKRSDLEAVASMLPTRTILQVRTHAQKYFDKVDKGEPFPTE 65

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig922.17282.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC35_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 2.370e-12
Identity = 32/56 (57.14%), Postives = 42/56 (75.00%), Query Frame = 2

Query:    2 WTSEEHDAFLRGVRRFKRNNWVGIATLLPTRTVLQIRTHAQKYYAKVDKGEPFPDE 169
            WT EEHDAFL+G+    +N W  IA ++ TR+ +Q+RTH QKY+ KVDKGE FP+E
Sbjct:   10 WTKEEHDAFLQGLVLHGKN-WDLIAPIVKTRSAVQVRTHGQKYFKKVDKGERFPEE 64

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BLAST of mRNA_E_fasciculatus_S2_contig922.17282.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FKM6_PYTOL)

HSP 1 Score: 66.6 bits (161), Expect = 2.890e-11
Identity = 30/51 (58.82%), Postives = 37/51 (72.55%), Query Frame = 2

Query:    2 WTSEEHDAFLRGVRRFKRNNWVGIATLLPTRTVLQIRTHAQKYYAKVDKGE 154
            WT  EH  FL+G+ +F    W  IATL+ TRTV+QIRTHAQKYY K++K E
Sbjct:  168 WTEAEHKLFLKGLEQFPYRAWKKIATLIKTRTVVQIRTHAQKYYQKLEKEE 218

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BLAST of mRNA_E_fasciculatus_S2_contig922.17282.1 vs.
Match: Uncharacterized (protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WUM8_GLOUD)

HSP 1 Score: 66.2 bits (160), Expect = 3.960e-11
Identity = 34/66 (51.52%), Postives = 41/66 (62.12%), Query Frame = 2

Query:    2 WTSEEHDAFLRGVRRFKRNNWVGIATLLPTRTVLQIRTHAQKYYAKVDKGEP-FPDEV*IGGRASH 196
            WT  EH  FL+G+  F    W  IATL+ TRTV+QIRTHAQKYY K++K E    D      RA+H
Sbjct:  174 WTDAEHKLFLKGLEAFPYRAWKKIATLIKTRTVVQIRTHAQKYYQKLEKEEARMKDREHHHDRATH 239

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig922.17282.1 vs.
Match: HTH (myb-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPL1_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 4.980e-11
Identity = 29/54 (53.70%), Postives = 40/54 (74.07%), Query Frame = 2

Query:    2 WTSEEHDAFLRGVRRFKRNNWVGIATLLPTRTVLQIRTHAQKYYAKVDKGEPFP 163
            WT EEH+AFL G+ + + N+      L+PTR+ LQIRTHAQKY+ K+++GE FP
Sbjct:   11 WTREEHEAFLSGLWQHESNSHA----LVPTRSALQIRTHAQKYFDKIERGEKFP 60

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig922.17282.1 vs.
Match: Uncharacterized (protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y4X9_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 5.280e-11
Identity = 30/51 (58.82%), Postives = 36/51 (70.59%), Query Frame = 2

Query:    2 WTSEEHDAFLRGVRRFKRNNWVGIATLLPTRTVLQIRTHAQKYYAKVDKGE 154
            WT  EH  FL+G+  F    W  IATL+ TRTV+QIRTHAQKYY K++K E
Sbjct:  117 WTDAEHQLFLQGLETFPYRAWKKIATLIKTRTVVQIRTHAQKYYQKLEKEE 167

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig922.17282.1 vs.
Match: Uncharacterized (protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G907_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 5.330e-11
Identity = 30/51 (58.82%), Postives = 36/51 (70.59%), Query Frame = 2

Query:    2 WTSEEHDAFLRGVRRFKRNNWVGIATLLPTRTVLQIRTHAQKYYAKVDKGE 154
            WT  EH  FL+G+  F    W  IATL+ TRTV+QIRTHAQKYY K++K E
Sbjct:  165 WTEAEHKLFLKGLETFPYRAWKKIATLIKTRTVVQIRTHAQKYYQKLEKEE 215

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig922.17282.1 vs.

BLAST of mRNA_E_fasciculatus_S2_contig922.17282.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
Uncharacterized	1.310e-34	98.25	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]
Uncharacterized	8.220e-31	100.00	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
HTH	6.120e-19	67.86	myb-type domain-containing protein n=1 Tax=Ectocar...	[more]
HTH	1.520e-18	67.86	myb-type domain-containing protein n=1 Tax=Ectocar...	[more]
Uncharacterized	2.370e-12	57.14	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	2.890e-11	58.82	protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep...	[more]
Uncharacterized	3.960e-11	51.52	protein n=1 Tax=Globisporangium ultimum (strain AT...	[more]
HTH	4.980e-11	53.70	myb-type domain-containing protein n=1 Tax=Ectocar...	[more]
Uncharacterized	5.280e-11	58.82	protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID...	[more]
Uncharacterized	5.330e-11	58.82	protein n=1 Tax=Albugo candida TaxID=65357 RepID=A...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig922	contig	E_fasciculatus_S2_contig922:19222..19422 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Properties


Property Name	Value
Stop	0
Start	1
Model size	201
Hectar predicted targeting category	other localisation
Exons	1
Ec32 ortholog description	conserved unknown protein
Ec32 ortholog	Ec-28_001920.1
Cds size	201

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842572.2974088-CDS-E_fasciculatus_S2_contig922:19221..19422	1696842572.2974088-CDS-E_fasciculatus_S2_contig922:19221..19422	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig922 19222..19422 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig922.17282.1	prot_E_fasciculatus_S2_contig922.17282.1	Ectocarpus fasciculatus EfasUO2	polypeptide	E_fasciculatus_S2_contig922 19222..19422 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E_fasciculatus_S2_contig922:19222..19422+
coding sequence from alignment at E_fasciculatus_S2_contig922:19222..19422+

protein sequence of mRNA_E_fasciculatus_S2_contig922.17282.1

>prot_E_fasciculatus_S2_contig922.17282.1 ID=prot_E_fasciculatus_S2_contig922.17282.1|Name=mRNA_E_fasciculatus_S2_contig922.17282.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=67bp
MDVRGTRRFSARGTPFQAQQLGGHSHPAAHSDRPADQDARPEVLRQGRQG
GAIPRRGLNRWARIPRK

mRNA from alignment at E_fasciculatus_S2_contig922:19222..19422+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E_fasciculatus_S2_contig922.17282.1 ID=mRNA_E_fasciculatus_S2_contig922.17282.1|Name=mRNA_E_fasciculatus_S2_contig922.17282.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=201bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig922:19222..19422+ (Ectocarpus fasciculatus EfasUO2)
ATGGACGTCAGAGGAACACGACGCTTTTCTGCGCGGGGTACGCCGTTTCA
AGCGCAACAACTGGGTGGGCATAGCCACCCTGCTGCCCACTCGGACCGTC
CTGCAGATCAGGACGCACGCCCAGAAGTACTACGCCAAGGTCGACAAGGG
GGAGCCATTCCCAGACGAGGTTTGAATCGGTGGGCGCGCATCCCACGTAA
A

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig922:19222..19422+

>mRNA_E_fasciculatus_S2_contig922.17282.1 ID=mRNA_E_fasciculatus_S2_contig922.17282.1|Name=mRNA_E_fasciculatus_S2_contig922.17282.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=201bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig922:19222..19422+ (Ectocarpus fasciculatus EfasUO2)
ATGGACGTCAGAGGAACACGACGCTTTTCTGCGCGGGGTACGCCGTTTCA
AGCGCAACAACTGGGTGGGCATAGCCACCCTGCTGCCCACTCGGACCGTC
CTGCAGATCAGGACGCACGCCCAGAAGTACTACGCCAAGGTCGACAAGGG
GGAGCCATTCCCAGACGAGGTTTGAATCGGTGGGCGCGCATCCCACGTAA
A