mRNA_E_fasciculatus_S2_contig9218.17278.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9218.17278.1
Unique NamemRNA_E_fasciculatus_S2_contig9218.17278.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9218.17278.1 vs.
Match: EsV-1-160 (n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNC2_ESV1K)

HSP 1 Score: 1841 bits (4769), Expect = 0.000e+0
Identity = 975/1211 (80.51%), Postives = 1052/1211 (86.87%), Query Frame = 1
Query:    1 MTTVTWTKVGTQYQVSSKQHLLQIMHKGALYTDLGDPPADYWSESYLQTADIDLIDDHENITPIGVSVGSSTADAFEGVYDGGSHAISNWGFVADTDTNFAALFATLKGTLKHMRLDGVWTLSGTGTGVTYGGFLCGYGSS-ATVLDIEADFSSGTLLECGTEYTGVLFGRFWGDGYGITLRGSVDVSNASDKFCGGVCGYGYYSTLTMVRNLATFPNGLSGSTVGGIAAIAHRTSFTACINAMVGDMHATSYCGGIIGYGNQLNSDCTNVXXXXXXXXXXXXXXXXXXGSFYTYNSSSDFTEWMNYMSGDITGPM--SGGIVGYAYDNGTDTYSPNLSNSLVAMNGSVDQAVVGGGDTLPIVEVLVDTSFGMTYTAHDYPSNTTLQGYTTNTVFTALPYVPLSETDPEGTVYEWDFIFANIGGNASYADYTHLSLHTGGVSAPFYADVDLADSNTTTYLAYGNLGNNSLFVDSSLDVNASTASVVYNHAKSEIIFGGAFPSTTLTWVKSGTQYEVSTKEHLMQLMHKGLLYVNENDPPPDYWSASYLQTADIDLIDDHENITPIGESTSNPFGGDYDGGSYKISNWCSTDYHDQTGLFGEVVGGSLKHLRLGGVWTSSGASVDRGFVCGKLDNAVAYDVEGDFAEGTTIAKGALYTGTLFGYANDSEVYGATVRGSVEIEESVTGRSGGVAGYAVGTDVTMCRNLATFTKGITGDSAGGVIAFTDRCNLSCLMNAMQGNIVGSYAGGVCGQSFYQTNAVXXXXXXXXXXXXXSGAGGIVGRAYTRDDDLVFTKLANHMNGDVTSTVASGGVFGELSRISG-TGEISASNSIVAMNGAVEQAVRGAEDFTPSAIDVVVDTSFGMTHTSGGDDYASSDTTLEGYTTDPSLTELSYIPLTGTDPDGTAYSWDFVFANIGGNASYSDYTHLSLHTGQVSAPLFADFGISETNAQVYATFAHLDDKALFTDASFTVHDSSADVVFDYSKSTVLFGTAPALVCDPRPLNIKVLLGSFVESGAFNKLTYQESGTLNEVVAHENFTETTKIISGLQSETTYTIRLYTAAGLGLEYTLLGQDDCTTYENLAKNYDVADFVSASGTYDISDLDDSVSSAMNDLFPTGASVEVAINNSKKSRKTTFVKRGGVVSVANEEALLLPFDSSAGGTQSATMTLSDDTSVTVDFDDQSGNVEIDGVSFTHGQSLILDGKKVTVVDI 3621
            MTTVTWTK GTQY+VSSKQHLLQIMHKGALYTDLGDPPA+YWSESYLQT DIDLIDDHENITPIGVS+GS T+D+F+G YDGG HAISNW F + TDT FA LFAT+ GTLKH+RLDGVWTLSG+     Y GFLCGY +S AT+LDIEADFS+GT+LE   E TGVLFGR  GD YG+TLRGS+  + +S    GGVCGYGYYS++TM+RNLA FPNG+SG +VGGIA  AHRTS T C+NAM+GDMH T  CGGIIG G+Q++ DC NV XXXXXXXXXXXXXXXX G F TYNSSSDFTEWMNYMSG+IT      GGI+G A D+ T TY P+LSNSLVAMNGSVD AVVG GDTLP+V VLVDTSFGMTYT+HDYPS+T L+GYTT+TVFTALPY+PLS TD +GTVYEWDFIFAN+ GNASYADYTHLSLHTG V APFYAD+DL D+N  TYLAY N+ NNSLFVDSSL VNASTAS+VYNH+KSEI+FGGAFPSTTLTWVKSG QYEVSTKEHL+QLMH+GLLYVN NDPP DYWSASYLQTADIDLIDDHE+ITPIG ST NPF GDYDGGSYKISNWCST+  D+TGLFGEVVGGSLKHLRLGGVWTSSGAS  RGFVCGKLD+AV  DVEGDFAEGT I   A +TGTLFGY NDSEVYGATVRGSVEIEES  GR+GGV G+AVGTDVTMCRN+ATFTKGITGDSAGGVI F D CNLSCL+NAMQGNIVGS+AGGVCGQ F  TNA XXXXXXXXXXXX S AGGIVGR +TRDD+LVFTKLANH              FG+LSR SG TG+ISASNSIVAMNGAVEQAVRG EDFTPSAID VVDT FGMTH +GGDDYASS+T LEGYTTDPS TELSY PL GTDPDGT YSWDFVFANIGGNASYSDYTHLSLHTGQVSAPLFADFG+SETN QVYAT+AHL DKALFTD SFTVHDSSADVVFDYSKSTVLFGTAPAL+CDPR LNIKVLL S V+ GA NKLTYQESGTLNEVVAHENFT+T+KI+SGL++ETTYTIRLYTAAGLGLEYTLLGQDDCTTY NLAKNYDVADFVSASG YDISDLDDSVSSAMNDLF TGASVEVAIN+SKKSRKTTFVKRGGV+SVANEEALLLPFDSS+G TQSAT+TLSD               EI GVSFTHGQSLILDGKKVTVVDI
Sbjct:    1 MTTVTWTKTGTQYEVSSKQHLLQIMHKGALYTDLGDPPAEYWSESYLQTTDIDLIDDHENITPIGVSIGSITSDSFQGEYDGGCHAISNWSFASGTDTYFAGLFATVSGTLKHVRLDGVWTLSGS---AKYNGFLCGYSTSTATILDIEADFSTGTILEFSGEITGVLFGRARGDVYGVTLRGSIYCTGSSTTCAGGVCGYGYYSSMTMIRNLAIFPNGISGLSVGGIAGSAHRTSLTRCVNAMIGDMHGTYRCGGIIGDGSQMSKDCKNVVXXXXXXXXXXXXXXXXMGRFATYNSSSDFTEWMNYMSGNITSMTLSCGGIIGTAVDHDTATYYPSLSNSLVAMNGSVDHAVVGDGDTLPLVGVLVDTSFGMTYTSHDYPSDTPLEGYTTDTVFTALPYIPLSGTDSDGTVYEWDFIFANLAGNASYADYTHLSLHTGDVQAPFYADLDLPDNNAMTYLAYANIDNNSLFVDSSLGVNASTASIVYNHSKSEILFGGAFPSTTLTWVKSGAQYEVSTKEHLLQLMHQGLLYVNGNDPPTDYWSASYLQTADIDLIDDHEHITPIGVSTENPFSGDYDGGSYKISNWCSTEASDRTGLFGEVVGGSLKHLRLGGVWTSSGASSYRGFVCGKLDSAVVRDVEGDFAEGTAITNSATHTGTLFGYVNDSEVYGATVRGSVEIEESTNGRTGGVVGHAVGTDVTMCRNVATFTKGITGDSAGGVIGFNDACNLSCLINAMQGNIVGSFAGGVCGQIFSGTNAXXXXXXXXXXXXXTSTAGGIVGRVFTRDDNLVFTKLANHXXXXXXXXXXXXXXFGQLSRFSGLTGDISASNSIVAMNGAVEQAVRGTEDFTPSAIDAVVDTGFGMTH-AGGDDYASSNTALEGYTTDPSFTELSYFPLVGTDPDGTTYSWDFVFANIGGNASYSDYTHLSLHTGQVSAPLFADFGLSETNTQVYATYAHLGDKALFTDESFTVHDSSADVVFDYSKSTVLFGTAPALICDPRALNIKVLLSSLVDVGAVNKLTYQESGTLNEVVAHENFTDTSKIVSGLKAETTYTIRLYTAAGLGLEYTLLGQDDCTTYANLAKNYDVADFVSASGAYDISDLDDSVSSAMNDLFSTGASVEVAINDSKKSRKTTFVKRGGVISVANEEALLLPFDSSSGATQSATITLSDXXXXXXXXXXXXXXXEIGGVSFTHGQSLILDGKKVTVVDI 1207          
BLAST of mRNA_E_fasciculatus_S2_contig9218.17278.1 vs.
Match: Uncharacterized (protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWE4_9PHYC)

HSP 1 Score: 274 bits (700), Expect = 1.270e-75
Identity = 230/740 (31.08%), Postives = 356/740 (48.11%), Query Frame = 1
Query: 1501 TLTWVKSG-TQYEVSTKEHLMQLMHKGLLYVNENDPPPDYWSASYLQTADIDLIDDHENITPIGESTSNPFGGDYDGGSYKISNWCST----------DYHDQTGLFGEVVGGS-LKHLRLGGVWTSSGASVDRGFVCGKLDNAVAYDVEGDFAEGTTIAKGALYTGT-----LFGYANDSEVYGATVRGSVEI---EESVTGRSGGVAGYAVGTDVTMCRNLATFTKGITGDSAGGVIAFTDRCNLSCLMNAMQGNIVGS-YAGGVCGQ--SFYQTNAVXXXXXXXXXXXXXSGAG---GIVGRAYTRDDDLVFTKLANHMNGDVTSTVAS--GGVFGELSRISGTGEISASNSIVAMNGAVEQAVRGAEDFTPSAIDVVVDTSFGMTHTSGGDDYASSDTTLEGYTTDPSLTELSYIPLTGTDPDGTAYSWDFVFANIGGNASYSDYTHLSLHTGQVSAPLFADFGISETNAQVYATFAHLDDKALFTDASFTVHDSSADVVFDYSKSTVLFGTAPALVCDPRPLNIKVLLGSFVESGAFNKLTYQESGTLNEVVAHENFTETTKIISGLQSETTYTIRLYTAAGLGLEYTLLGQDDCTTYENLAKNYDVADF-VSASGTYDISDLD-DSVSS---AMNDLFPTGASVEVAINNSKKSRKTTFVKRGGVVSVANEEALLLPFDSSAGGTQSATMTLSDDTSVTVDFDDQSGNVEIDGVSFTHGQSLILDGKKVTVVDI 3621
            ++TWV +G ++YEVS+KEHL QLMH G LY NE   P ++ SA ++QT +IDL +D  NI PIG S  + F G YDG +  I NW  T          D+    GLFG V     LK++R+ GV T  G +   G + G  ++A   +++ +  EG+ I +G +  G      + G      +YG T+ G +++       T   G V GYA  T VT+ RNLA FT  +TG + GGV   +    ++ ++NAM+G+++ + +AGG+ G+  +   +  V             +GAG   GIVG  Y+    L   K  N+M+GD+ S VAS   G+ G+  R++   + + +N++ AM G+   A      +      V +DT FG+T+T        S      +T DP  T L  I LTGTD +  AY W+FVF N                                                                      +T+ F          RPL++ V  G  V      +LT Q S    E     +F+   K    LQSE+ Y  R+Y+      EYTL  Q   TT  N++ NY   D+       +D+S  D D++++    MN++F TG ++ + I +  +++KT FVK GG V +  E A+L+PF  + G  Q+A++TLSD++SVT+ +D+ +G + I GV ++ G+S I+D +K+T+V++
Sbjct:    2 SVTWVLNGDSKYEVSSKEHLHQLMHNGSLYTNEGSVPSNFMSADFVQTVEIDLENDDTNIQPIGLSDDS-FKGSYDGANLSIKNWSYTATGFDTGSTDDFLAYVGLFGYVFHPCVLKNIRMTGVCTLRGFTTFGGILLGYSNSATISNIDLELDEGSLIEQGDVPNGYSNMGGVVGQLAGGSMYGVTLSGELDVVPGPNMATQAVGCVIGYAGNTIVTLVRNLAKFTSTVTGYNVGGVFGDSSAVTITKVLNAMEGSLLAAMFAGGIFGKLRTTGSSQVVGELVNSMNGDIEVTGAGFCAGIVGYLYS---SLNHDKWLNYMSGDIVSAVASRSAGIIGQ--RVAA--DYTFTNTLNAMKGSTYHA---GLPYDHGETMVYIDTEFGLTYTDSLSTALFSTMDTSAFTLDPE-TSLPVIALTGTDSESVAYDWEFVFGN---------------------------------------------------------------------NTTIEFVA--------RPLHVDVKFGE-VPGATQYRLTKQLSPDGVETTVDTDFSTFEKRAESLQSESVYVFRVYSRTDPESEYTLAYQSSTTTLANVSSNYSAGDYKAEGEDQFDLSSFDKDTMANFHEVMNEVFDTGDAIVIPIGS--ETKKTKFVKLGGSVPIDGESAVLIPFLETGGSAQTASLTLSDNSSVTLTYDETAGTIGIGGVDYSPGESTIVDSQKLTLVEV 649          
BLAST of mRNA_E_fasciculatus_S2_contig9218.17278.1 vs.
Match: FirrV-1-A51 (n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM36_9PHYC)

HSP 1 Score: 253 bits (647), Expect = 1.550e-68
Identity = 233/744 (31.32%), Postives = 338/744 (45.43%), Query Frame = 1
Query: 1495 STTLTWVK-SGTQYEVSTKEHLMQLMHKGLLYVNENDPPPDYWSASYLQTADIDLIDDHENITPIGESTSNPFGGDYDGGSYKISNWCSTDYHDQT--------GLFGEVVGGS--LKHLRLGGVWTSSGASVDRGFVCGKLDNAVAYDVEGDFAEGTTIAKGALYTGT------LFGYANDSEVYGATVRGSVEI---EESVTGRSGGVAGYAVGTDV-TMCRNLATFTKGITGDSAGGVIAFTDRC----NLSCLMNAMQGNIVG-SYAGGVCGQSFYQTNA-----VXXXXXXXXXXXXXSGAGGIVGRAYTRDDDLVFTKLANHMNGDVTSTVASGGVFGELSRISGTGEISASNSIVAMNGAVEQAVRGAEDFTPSAIDVVVDTSFGMTHTSGGDDYASSDTTLEGYTTDPSLTELSYIPLTGTDPDGTAYSWDFVFANIGGNASYSDYTHLSLHTGQVSAPLFADFGISETNAQVYATFAHLDDKALFTDASFTVHDSSADVVFDYSKSTVLFGTAPALVCDPRPLNIKVLLGSFVESGAFNKLTYQESGTLNEVVAHENFTETTKIISGLQSETTYTIRLYTAAGLGLEYTLLGQDDCTTYENLAKNYDVADFVSASGTYDISDLDDSVSSAM----NDLFPTGASVEVAINNSKKSRKTTFVKRGGVVSVANEEALLLPFDSSAGGTQSATMTLSDDTSVTVDFDDQSGNVEIDGVSFTHGQSLILDGKKVTVVDI 3621
            +TT+TWV+ S ++YEVS+KEHL+Q+M+ G LY N    P D+W   Y+QT DID   +  N+ PI +     F G YDG +Y+I N+   D    T        GLFG V+G +  +K+L+L G W   G     G + G    +   ++      G++I + ++ + T      + G  + + V G T+ G V +     +     GG+ G A    V T+ RNLATF   + G   GGVI    RC    ++S  +NAM G+I G + AGGV G      N+     +             + AGG+ G     ++D  +T L N+M GD+                +GT   S + S+VAMNG V+ A    ED  P  +   VD SFG+T+T    D+  +   L G   D S + L Y  LTGTD  GT+Y+W+FVF N              L  G    P                       K LF D +F                                          V      KLT + +   +E+     FT+  + +  LQ ET YTI LY++   G  YT  G    TT  N++ NY  +DF + SG YD+S    S  S +      LF TG ++ V + +  K+ K  FVK G   S+  EEAL +PF+ +A   QSA +TLSD+++VT+ FD+    VEI G  +  G+S I+D +K+T+V I
Sbjct:    3 TTTITWVRDSNSKYEVSSKEHLLQIMNNGTLYTNAGTSPGDFWRVDYIQTTDIDFASNSTNVVPIEK-----FKGTYDGDNYEIRNYSYEDPEFNTANNCINFAGLFGYVLGAAAEVKNLKLTGRWNVKGVHSSGGLLAGYCYISKVANITCSLDAGSSIEQDSITSDTYPKVGGVIGQTDTATVQGITLEGEVSVICSPSATRAYVGGIIGSANSNSVVTLLRNLATFPSTLKGGEVGGVIG---RCQFATSISKCLNAMTGDIEGDTLAGGVIGMGQTGNNSQVLDYLVCSMRGNITPVGNARAGGVFG-GIQYENDHTYTTLLNYMTGDIXXXXX----XXXXXXXTGT-TYSVNTSMVAMNGYVKFAAV-FED--PGIVIAHVDPSFGLTYTI---DHGITTDALSGLPID-SESILPYFDLTGTDNYGTSYAWEFVFGN--------------LPEGMTLVP-----------------------KPLFIDVTFAA----------------------------------------VSGAIAYKLTKKTTTATDEIDVATGFTDLAQRVRDLQPETEYTISLYSSTD-GTTYTPAGTASATTLANVSSNYSASDFSNESGKYDLSKFGKSSRSQLFQLAGTLFSTGDNLVVPVGSGNKTTK--FVKVGENTSIVGEEALFIPFNETA---QSANITLSDNSTVTLSFDESDNTVEIGGEKYASGESTIVDQQKLTIVSI 642          
BLAST of mRNA_E_fasciculatus_S2_contig9218.17278.1 vs.
Match: N/a (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP43_ECTSI)

HSP 1 Score: 215 bits (547), Expect = 1.400e-58
Identity = 144/380 (37.89%), Postives = 211/380 (55.53%), Query Frame = 1
Query: 2491 MNGAVEQAVRGAEDFTPSAIDVVVDTSFGMTHTSGGDDYASSDTTLE-GYTTDPSLTELSYIPLTGTDPDGTAYSWDFVFANIGGNASYSDYTHLSLHTGQVSAPLFADFGISETNAQVYATFAHLDDKALFTDASFTVHDSSADVVFDYSKSTVLFGTAPALVCDPRPLNIKVLLGSFVESGAFNKLTYQESGTLNEVVAHENFTETTKIISGLQSETTYTIRLYTAAGLGLEYTLLGQDDCTTYENLAKNYDVADFVSASGTYDISDLDDSV-SSAMNDLFPTGASVEVAINNSKKSR-KTTFVKRGGVVSVANEEALLLPFDSSAGGTQSATMTLSDDTSVTVDFDDQSGNVEIDGVSFTHGQSLILDGKKVTVVDI 3621
            M+G+VEQ+ RG ++FTPS ++V VDTSFGMT+T  G+DY S+    +  +      T+L YI +      G  Y+WDFVFAN+GG A++  YTHLSLHT +VS PL+ DFG++ETN  VY T+A+ +D +L+ DAS T+ +++AD+ FD++KS V++ T+ AL         + L  +  + G F   T Q                                 L      G  +T LG D  + Y++ +  Y V +     G  DIS +   V +S +N +F TG  VEV +   +++  KTT VK G +V + +  ALLLPFD S   TQ +++ LSDDT VTV     SG + + G ++  G+S ++DGKK TV DI
Sbjct:    1 MHGSVEQSFRGHDEFTPSVVEVFVDTSFGMTYT--GNDYGSATMVADDAFVYHADFTDLPYIDI------GGLYAWDFVFANVGGKAAFDKYTHLSLHTSEVSTPLYTDFGLAETNTTVYLTYANTEDNSLYIDASLTISETTADIAFDHAKSAVMYSTSDAL---------ETLTWTKNDDGKFEVATAQH--------------------------------LLQIMNQGTMFTDLG-DYPSNYDDASDIYHVEE-----GLRDISKVGFEVPASLVNVVFATGDIVEVDMAFERETTMKTTLVKNGDLVEIEDVNALLLPFDLSTSETQESSLKLSDDTVVTVSVAQGSGEISVGGQTYESGKSFVMDGKKCTVYDI 325          
BLAST of mRNA_E_fasciculatus_S2_contig9218.17278.1 vs.
Match: EsV-1-39 (n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNM5_ESV1K)

HSP 1 Score: 93.2 bits (230), Expect = 1.250e-15
Identity = 70/225 (31.11%), Postives = 115/225 (51.11%), Query Frame = 1
Query: 2965 APALVCD-PRPLNIKVLLGSFVESGAFN-KLTYQESGTLNEVVAHENFTETTKIISGLQSETTYTIRLYTAAGLGLEYTLLGQDDCTTYENLAKNYDVADFVSASGTYDISDLDDSVSSAM----NDLFPTGASVEVAINNSKKSRKTTFVKRGGVVSVANEEALLLPFDSSAGGTQSATMTLSDDTSVTVDFDDQSGNVEIDGVSFTHGQSLILDGKKVTVVDI 3621
            AP LV   PRP++I +   +   + A+  K +  E     +  +  + T     +  L S+T Y++  Y +         +      T  N+A N+DV+ +    G +D+  L     SA+    ND+F TG SV +++   K   KT FVKRG   ++ +  ++ +PF +SAG  QS T+ L+D T+V V +DD +  V I G ++  G SL+LDG+KVT+  +
Sbjct:  390 APGLVSVVPRPMSIDLTWPAVSGATAYGVKYSVGEMDAEAKTTSAASTTALRHSVRNLLSQTLYSVYTYYSMDDTDPSVPMSSGQYLTLPNVASNHDVSSYADERGGFDLRGLSTESLSALDDVLNDIFSTGDSVTLSLRG-KGETKTKFVKRGDTAAIDDGVSIAMPFSASAGPGQSVTLALTDATTVAVAYDDTTEAVLIGGTTYAAGDSLVLDGQKVTIFSV 613          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9218.17278.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
EsV-1-1600.000e+080.51n=1 Tax=Ectocarpus siliculosus virus 1 (isolate Ne... [more]
Uncharacterized1.270e-7531.08protein n=1 Tax=Feldmannia species virus TaxID=394... [more]
FirrV-1-A511.550e-6831.32n=1 Tax=Feldmannia irregularis virus a TaxID=23199... [more]
N/a1.400e-5837.89n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8... [more]
EsV-1-391.250e-1531.11n=1 Tax=Ectocarpus siliculosus virus 1 (isolate Ne... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9218contigE_fasciculatus_S2_contig9218:200..3823 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeBacteria
Stop1
Start1
Seed ortholog score63.9
Seed ortholog evalue5.8e-07
Seed eggNOG ortholog610130.Closa_2650
Model size3624
KEGG koko:K21471
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.cell wall binding repeat-containing protein
EggNOG OGs1UYJ9@1239,21ZR1@1506553,248QE@186801,COG4733@1,COG4733@2,COG5263@1,COG5263@2
Cds size3624
COG Functional cat.N
Best tax levelLachnoclostridium
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko01011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842571.903007-CDS-E_fasciculatus_S2_contig9218:199..38231696842571.903007-CDS-E_fasciculatus_S2_contig9218:199..3823Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9218 200..3823 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9218.17278.1prot_E_fasciculatus_S2_contig9218.17278.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9218 200..3823 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9218.17278.1

>prot_E_fasciculatus_S2_contig9218.17278.1 ID=prot_E_fasciculatus_S2_contig9218.17278.1|Name=mRNA_E_fasciculatus_S2_contig9218.17278.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=1208bp
MTTVTWTKVGTQYQVSSKQHLLQIMHKGALYTDLGDPPADYWSESYLQTA
DIDLIDDHENITPIGVSVGSSTADAFEGVYDGGSHAISNWGFVADTDTNF
AALFATLKGTLKHMRLDGVWTLSGTGTGVTYGGFLCGYGSSATVLDIEAD
FSSGTLLECGTEYTGVLFGRFWGDGYGITLRGSVDVSNASDKFCGGVCGY
GYYSTLTMVRNLATFPNGLSGSTVGGIAAIAHRTSFTACINAMVGDMHAT
SYCGGIIGYGNQLNSDCTNVVNSMTGNITGDSRAGGIIGSFYTYNSSSDF
TEWMNYMSGDITGPMSGGIVGYAYDNGTDTYSPNLSNSLVAMNGSVDQAV
VGGGDTLPIVEVLVDTSFGMTYTAHDYPSNTTLQGYTTNTVFTALPYVPL
SETDPEGTVYEWDFIFANIGGNASYADYTHLSLHTGGVSAPFYADVDLAD
SNTTTYLAYGNLGNNSLFVDSSLDVNASTASVVYNHAKSEIIFGGAFPST
TLTWVKSGTQYEVSTKEHLMQLMHKGLLYVNENDPPPDYWSASYLQTADI
DLIDDHENITPIGESTSNPFGGDYDGGSYKISNWCSTDYHDQTGLFGEVV
GGSLKHLRLGGVWTSSGASVDRGFVCGKLDNAVAYDVEGDFAEGTTIAKG
ALYTGTLFGYANDSEVYGATVRGSVEIEESVTGRSGGVAGYAVGTDVTMC
RNLATFTKGITGDSAGGVIAFTDRCNLSCLMNAMQGNIVGSYAGGVCGQS
FYQTNAVCVVNSMTGSIEGSSGAGGIVGRAYTRDDDLVFTKLANHMNGDV
TSTVASGGVFGELSRISGTGEISASNSIVAMNGAVEQAVRGAEDFTPSAI
DVVVDTSFGMTHTSGGDDYASSDTTLEGYTTDPSLTELSYIPLTGTDPDG
TAYSWDFVFANIGGNASYSDYTHLSLHTGQVSAPLFADFGISETNAQVYA
TFAHLDDKALFTDASFTVHDSSADVVFDYSKSTVLFGTAPALVCDPRPLN
IKVLLGSFVESGAFNKLTYQESGTLNEVVAHENFTETTKIISGLQSETTY
TIRLYTAAGLGLEYTLLGQDDCTTYENLAKNYDVADFVSASGTYDISDLD
DSVSSAMNDLFPTGASVEVAINNSKKSRKTTFVKRGGVVSVANEEALLLP
FDSSAGGTQSATMTLSDDTSVTVDFDDQSGNVEIDGVSFTHGQSLILDGK
KVTVVDI*
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mRNA from alignment at E_fasciculatus_S2_contig9218:200..3823-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9218.17278.1 ID=mRNA_E_fasciculatus_S2_contig9218.17278.1|Name=mRNA_E_fasciculatus_S2_contig9218.17278.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3624bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9218:200..3823- (Ectocarpus fasciculatus EfasUO2)
ATGACGACGGTGACATGGACGAAGGTGGGCACGCAGTACCAGGTGTCGTC GAAGCAACATTTGCTGCAGATCATGCACAAAGGTGCCCTCTATACCGACC TCGGCGACCCCCCCGCCGACTATTGGTCGGAAAGCTACCTGCAGACGGCC GATATCGACCTGATCGACGACCACGAAAACATTACACCCATCGGCGTAAG CGTCGGGAGCAGCACTGCAGATGCTTTTGAAGGCGTTTATGACGGAGGGT CTCACGCCATTTCTAACTGGGGATTTGTGGCAGACACAGACACGAACTTT GCCGCTCTTTTCGCGACTCTCAAGGGCACTTTGAAACACATGCGTCTCGA CGGCGTGTGGACCCTGTCCGGGACTGGGACTGGTGTTACATACGGTGGGT TTCTCTGCGGATACGGCAGCAGCGCCACAGTTCTTGACATCGAGGCTGAT TTCTCCTCTGGTACGCTTCTGGAATGCGGGACTGAGTATACAGGAGTCCT CTTCGGGAGGTTCTGGGGGGACGGGTATGGCATCACCCTTCGTGGAAGTG TCGATGTTTCAAATGCATCAGATAAGTTTTGCGGTGGTGTTTGTGGTTAC GGGTATTATTCGACATTGACCATGGTGAGAAACCTTGCAACTTTTCCAAA CGGACTCTCCGGGTCAACTGTTGGCGGGATAGCGGCAATTGCACATCGAA CATCTTTCACGGCGTGCATCAACGCGATGGTCGGAGACATGCATGCCACT TCGTATTGTGGGGGTATCATTGGTTATGGGAATCAGCTGAATTCGGATTG TACAAACGTGGTGAATAGCATGACTGGAAATATTACGGGAGATTCACGGG CGGGAGGTATCATTGGGAGTTTTTATACGTACAACAGCAGCTCTGATTTC ACCGAATGGATGAACTACATGAGTGGCGACATAACAGGCCCGATGTCCGG AGGTATCGTCGGATACGCATACGACAACGGGACTGACACATATTCTCCCA ATTTGTCAAACTCGTTGGTAGCAATGAACGGGTCCGTCGACCAGGCGGTG GTAGGGGGTGGGGACACGCTTCCGATCGTAGAAGTGTTGGTAGACACCAG CTTCGGCATGACGTACACGGCCCACGACTACCCGTCGAACACTACGCTCC AGGGGTACACCACCAACACCGTGTTCACGGCTCTCCCGTACGTCCCGCTG AGTGAAACGGATCCAGAGGGAACGGTGTACGAGTGGGATTTCATTTTCGC CAACATCGGTGGGAACGCCTCGTATGCCGACTACACGCATCTCAGCCTCC ACACCGGTGGCGTATCGGCCCCGTTTTACGCGGATGTCGATCTTGCGGAT AGCAACACCACGACGTACCTCGCGTACGGCAACCTCGGCAACAACTCGCT GTTCGTAGACTCGTCGCTCGATGTCAACGCCTCCACGGCGAGCGTCGTGT ACAATCACGCAAAATCTGAAATTATTTTCGGCGGAGCGTTTCCATCGACG ACGCTGACGTGGGTGAAAAGCGGCACACAGTACGAGGTATCTACAAAGGA ACATCTGATGCAGCTCATGCACAAAGGCTTGCTGTACGTCAATGAGAACG ACCCGCCCCCCGACTACTGGAGTGCGAGTTACTTGCAGACGGCCGATATC GACCTGATCGACGACCACGAAAACATCACTCCCATCGGGGAAAGCACCTC GAACCCCTTCGGCGGCGACTACGACGGCGGTTCCTACAAAATCTCCAACT GGTGCTCGACCGACTACCACGACCAGACGGGTCTGTTCGGGGAAGTTGTT GGTGGCTCTCTCAAGCACCTGCGACTGGGCGGCGTGTGGACGTCATCCGG TGCCTCGGTTGACAGAGGGTTCGTTTGCGGCAAGCTGGACAATGCCGTTG CTTACGACGTGGAAGGAGACTTCGCGGAAGGCACGACAATTGCCAAAGGT GCCCTTTACACAGGAACCCTGTTCGGGTATGCCAACGATTCCGAGGTGTA TGGAGCGACGGTGCGCGGAAGTGTCGAGATCGAAGAGTCTGTCACCGGAC GAAGTGGAGGTGTCGCGGGATACGCCGTGGGCACAGACGTTACCATGTGC CGCAACCTCGCAACTTTCACAAAGGGAATCACTGGTGACAGCGCGGGTGG TGTCATTGCTTTCACCGATAGGTGCAACCTGAGCTGTTTAATGAATGCAA TGCAGGGAAATATCGTGGGAAGTTACGCCGGCGGAGTTTGTGGACAATCT TTTTATCAGACGAATGCCGTTTGCGTGGTGAACAGCATGACGGGAAGTAT CGAGGGCTCGTCGGGGGCCGGAGGCATCGTCGGGCGCGCGTACACCAGGG ACGACGATCTGGTCTTCACCAAACTTGCCAACCACATGAACGGCGATGTC ACATCCACCGTAGCGTCCGGAGGTGTTTTTGGAGAGCTGTCCAGAATTTC CGGCACGGGAGAGATCTCCGCCTCGAACTCGATAGTCGCCATGAACGGCG CCGTGGAACAAGCCGTGCGCGGTGCAGAAGATTTCACGCCGTCGGCGATT GACGTTGTGGTCGACACCAGCTTCGGTATGACACACACGAGCGGAGGCGA CGACTACGCATCATCGGACACCACGCTCGAGGGGTACACCACGGACCCAA GTTTAACCGAACTCTCGTACATCCCTCTGACCGGAACCGATCCGGACGGT ACCGCGTACAGCTGGGACTTCGTCTTCGCCAACATCGGTGGGAACGCCTC GTATTCTGACTACACCCACCTCAGCCTGCACACTGGCCAGGTTTCAGCGC CACTGTTTGCCGATTTCGGGATCTCGGAGACCAATGCGCAGGTGTACGCC ACCTTCGCACACCTGGACGACAAGGCGTTGTTCACGGATGCGTCGTTCAC GGTGCACGACTCGTCCGCAGACGTCGTGTTCGACTACTCGAAGTCCACCG TGCTGTTCGGCACCGCCCCCGCGCTGGTATGCGACCCTAGACCCCTGAAC ATAAAGGTGCTCCTCGGCTCATTCGTGGAATCGGGTGCCTTCAACAAACT CACGTACCAGGAGTCGGGAACGCTGAACGAAGTCGTAGCGCACGAAAACT TCACGGAGACAACCAAAATCATATCGGGGCTCCAGTCGGAAACAACGTAC ACCATCCGTCTGTACACCGCAGCCGGGTTGGGCCTGGAGTACACGCTCCT CGGACAAGACGATTGTACGACCTACGAAAACCTGGCCAAGAACTACGACG TCGCTGATTTCGTATCCGCGAGCGGCACGTACGATATTTCTGACCTAGAC GATTCCGTATCGTCGGCCATGAACGACTTGTTTCCAACGGGAGCGTCCGT GGAGGTGGCCATCAACAACTCAAAGAAGTCGCGCAAGACAACCTTTGTGA AACGAGGGGGAGTCGTTAGCGTGGCCAACGAAGAAGCTCTCCTCCTGCCG TTCGACTCTTCCGCCGGAGGGACGCAGTCGGCAACGATGACCCTGTCGGA CGACACGTCCGTGACGGTCGACTTTGACGATCAGTCCGGTAACGTCGAAA TCGACGGCGTTTCGTTCACGCACGGACAATCGCTCATCCTTGATGGGAAA AAGGTTACGGTGGTTGATATCTAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9218:200..3823-

>mRNA_E_fasciculatus_S2_contig9218.17278.1 ID=mRNA_E_fasciculatus_S2_contig9218.17278.1|Name=mRNA_E_fasciculatus_S2_contig9218.17278.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=3624bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9218:200..3823- (Ectocarpus fasciculatus EfasUO2)
ATGACGACGGTGACATGGACGAAGGTGGGCACGCAGTACCAGGTGTCGTC
GAAGCAACATTTGCTGCAGATCATGCACAAAGGTGCCCTCTATACCGACC
TCGGCGACCCCCCCGCCGACTATTGGTCGGAAAGCTACCTGCAGACGGCC
GATATCGACCTGATCGACGACCACGAAAACATTACACCCATCGGCGTAAG
CGTCGGGAGCAGCACTGCAGATGCTTTTGAAGGCGTTTATGACGGAGGGT
CTCACGCCATTTCTAACTGGGGATTTGTGGCAGACACAGACACGAACTTT
GCCGCTCTTTTCGCGACTCTCAAGGGCACTTTGAAACACATGCGTCTCGA
CGGCGTGTGGACCCTGTCCGGGACTGGGACTGGTGTTACATACGGTGGGT
TTCTCTGCGGATACGGCAGCAGCGCCACAGTTCTTGACATCGAGGCTGAT
TTCTCCTCTGGTACGCTTCTGGAATGCGGGACTGAGTATACAGGAGTCCT
CTTCGGGAGGTTCTGGGGGGACGGGTATGGCATCACCCTTCGTGGAAGTG
TCGATGTTTCAAATGCATCAGATAAGTTTTGCGGTGGTGTTTGTGGTTAC
GGGTATTATTCGACATTGACCATGGTGAGAAACCTTGCAACTTTTCCAAA
CGGACTCTCCGGGTCAACTGTTGGCGGGATAGCGGCAATTGCACATCGAA
CATCTTTCACGGCGTGCATCAACGCGATGGTCGGAGACATGCATGCCACT
TCGTATTGTGGGGGTATCATTGGTTATGGGAATCAGCTGAATTCGGATTG
TACAAACGTGGTGAATAGCATGACTGGAAATATTACGGGAGATTCACGGG
CGGGAGGTATCATTGGGAGTTTTTATACGTACAACAGCAGCTCTGATTTC
ACCGAATGGATGAACTACATGAGTGGCGACATAACAGGCCCGATGTCCGG
AGGTATCGTCGGATACGCATACGACAACGGGACTGACACATATTCTCCCA
ATTTGTCAAACTCGTTGGTAGCAATGAACGGGTCCGTCGACCAGGCGGTG
GTAGGGGGTGGGGACACGCTTCCGATCGTAGAAGTGTTGGTAGACACCAG
CTTCGGCATGACGTACACGGCCCACGACTACCCGTCGAACACTACGCTCC
AGGGGTACACCACCAACACCGTGTTCACGGCTCTCCCGTACGTCCCGCTG
AGTGAAACGGATCCAGAGGGAACGGTGTACGAGTGGGATTTCATTTTCGC
CAACATCGGTGGGAACGCCTCGTATGCCGACTACACGCATCTCAGCCTCC
ACACCGGTGGCGTATCGGCCCCGTTTTACGCGGATGTCGATCTTGCGGAT
AGCAACACCACGACGTACCTCGCGTACGGCAACCTCGGCAACAACTCGCT
GTTCGTAGACTCGTCGCTCGATGTCAACGCCTCCACGGCGAGCGTCGTGT
ACAATCACGCAAAATCTGAAATTATTTTCGGCGGAGCGTTTCCATCGACG
ACGCTGACGTGGGTGAAAAGCGGCACACAGTACGAGGTATCTACAAAGGA
ACATCTGATGCAGCTCATGCACAAAGGCTTGCTGTACGTCAATGAGAACG
ACCCGCCCCCCGACTACTGGAGTGCGAGTTACTTGCAGACGGCCGATATC
GACCTGATCGACGACCACGAAAACATCACTCCCATCGGGGAAAGCACCTC
GAACCCCTTCGGCGGCGACTACGACGGCGGTTCCTACAAAATCTCCAACT
GGTGCTCGACCGACTACCACGACCAGACGGGTCTGTTCGGGGAAGTTGTT
GGTGGCTCTCTCAAGCACCTGCGACTGGGCGGCGTGTGGACGTCATCCGG
TGCCTCGGTTGACAGAGGGTTCGTTTGCGGCAAGCTGGACAATGCCGTTG
CTTACGACGTGGAAGGAGACTTCGCGGAAGGCACGACAATTGCCAAAGGT
GCCCTTTACACAGGAACCCTGTTCGGGTATGCCAACGATTCCGAGGTGTA
TGGAGCGACGGTGCGCGGAAGTGTCGAGATCGAAGAGTCTGTCACCGGAC
GAAGTGGAGGTGTCGCGGGATACGCCGTGGGCACAGACGTTACCATGTGC
CGCAACCTCGCAACTTTCACAAAGGGAATCACTGGTGACAGCGCGGGTGG
TGTCATTGCTTTCACCGATAGGTGCAACCTGAGCTGTTTAATGAATGCAA
TGCAGGGAAATATCGTGGGAAGTTACGCCGGCGGAGTTTGTGGACAATCT
TTTTATCAGACGAATGCCGTTTGCGTGGTGAACAGCATGACGGGAAGTAT
CGAGGGCTCGTCGGGGGCCGGAGGCATCGTCGGGCGCGCGTACACCAGGG
ACGACGATCTGGTCTTCACCAAACTTGCCAACCACATGAACGGCGATGTC
ACATCCACCGTAGCGTCCGGAGGTGTTTTTGGAGAGCTGTCCAGAATTTC
CGGCACGGGAGAGATCTCCGCCTCGAACTCGATAGTCGCCATGAACGGCG
CCGTGGAACAAGCCGTGCGCGGTGCAGAAGATTTCACGCCGTCGGCGATT
GACGTTGTGGTCGACACCAGCTTCGGTATGACACACACGAGCGGAGGCGA
CGACTACGCATCATCGGACACCACGCTCGAGGGGTACACCACGGACCCAA
GTTTAACCGAACTCTCGTACATCCCTCTGACCGGAACCGATCCGGACGGT
ACCGCGTACAGCTGGGACTTCGTCTTCGCCAACATCGGTGGGAACGCCTC
GTATTCTGACTACACCCACCTCAGCCTGCACACTGGCCAGGTTTCAGCGC
CACTGTTTGCCGATTTCGGGATCTCGGAGACCAATGCGCAGGTGTACGCC
ACCTTCGCACACCTGGACGACAAGGCGTTGTTCACGGATGCGTCGTTCAC
GGTGCACGACTCGTCCGCAGACGTCGTGTTCGACTACTCGAAGTCCACCG
TGCTGTTCGGCACCGCCCCCGCGCTGGTATGCGACCCTAGACCCCTGAAC
ATAAAGGTGCTCCTCGGCTCATTCGTGGAATCGGGTGCCTTCAACAAACT
CACGTACCAGGAGTCGGGAACGCTGAACGAAGTCGTAGCGCACGAAAACT
TCACGGAGACAACCAAAATCATATCGGGGCTCCAGTCGGAAACAACGTAC
ACCATCCGTCTGTACACCGCAGCCGGGTTGGGCCTGGAGTACACGCTCCT
CGGACAAGACGATTGTACGACCTACGAAAACCTGGCCAAGAACTACGACG
TCGCTGATTTCGTATCCGCGAGCGGCACGTACGATATTTCTGACCTAGAC
GATTCCGTATCGTCGGCCATGAACGACTTGTTTCCAACGGGAGCGTCCGT
GGAGGTGGCCATCAACAACTCAAAGAAGTCGCGCAAGACAACCTTTGTGA
AACGAGGGGGAGTCGTTAGCGTGGCCAACGAAGAAGCTCTCCTCCTGCCG
TTCGACTCTTCCGCCGGAGGGACGCAGTCGGCAACGATGACCCTGTCGGA
CGACACGTCCGTGACGGTCGACTTTGACGATCAGTCCGGTAACGTCGAAA
TCGACGGCGTTTCGTTCACGCACGGACAATCGCTCATCCTTGATGGGAAA
AAGGTTACGGTGGTTGATATCTAA
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