mRNA_E_fasciculatus_S2_contig921.17272.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig921.17272.1
Unique NamemRNA_E_fasciculatus_S2_contig921.17272.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig921.17272.1 vs.
Match: Hypothetical (leucine rich repeat calmodulin binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPS0_ECTSI)

HSP 1 Score: 354 bits (908), Expect = 1.580e-108
Identity = 314/328 (95.73%), Postives = 316/328 (96.34%), Query Frame = 1 
Query:  214 ELSRSELPFKVGDVTLMALGEGCPGLQRLSVKGCDGVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVNLSDGMQRDFALTGVQALAKGCTGLQTLVLDGCFQISKTALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAVTDAVVTAFARGCRRLRRLCLRGVVGVPPPLGAPGILAVCSLCRDLEVLDLREVWSLEDSALVGFHDHQMEKLEKVVLMDCPKITGAGVQWLVAGCPALSSLNLKGTKATLTALNIIKERYPYSRIK 1197
            ELSRSELPFKVGDVTLMALGEGCP LQ LSVKGCDGVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VNLSDGMQRDFALTGVQALAKGCTGLQTLVLDGCFQISKTAL    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  AVTDA V +FARGCRRLRRLCLRGVVGVPPPLGAPGILAVCSLCRDLE+LDLREV SLEDSALVGFHDHQMEKLEKVVLMDCPKITGAGVQWLVAGCPALSSLNLKGTKATLTALNIIKERYPYSRIK
Sbjct:  232 ELSRSELPFKVGDVTLMALGEGCPELQWLSVKGCDGVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNLSDGMQRDFALTGVQALAKGCTGLQTLVLDGCFQISKTALRSVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSAVTDAAVASFARGCRRLRRLCLRGVVGVPPPLGAPGILAVCSLCRDLELLDLREVLSLEDSALVGFHDHQMEKLEKVVLMDCPKITGAGVQWLVAGCPALSSLNLKGTKATLTALNIIKERYPYSRIK 559
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BLAST of mRNA_E_fasciculatus_S2_contig921.17272.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U2X0_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 2.050e-15
Identity = 161/335 (48.06%), Postives = 196/335 (58.51%), Query Frame = 1 
Query:  220 SRSELPFKVGDVTLMALGEGCPGLQRLSVKGCDGVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVNLSDGMQRDFALTGVQALAKGCTGLQTLVLDGCFQISKTALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAVTDAVVTAFARGCRRLRRLCLRGV-VGVPPPLGAPGILAVCSLCRDLEVLDLREVWSLEDSALVGFHDHQMEK-LEKVVLMDCPKITGAGVQWLVAGCPALSSLNLKGTKATLTALNIIKERYPYSRIKARKAGGF 1218
            SRSE PFKV D++LMALGE  P L+ L + GC+ +TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   LSDGM+RDF L G+QAL      +Q L L GCFQIS TA+                                             G   + +V  F R   R    CLR + +     L   G+  + + C  L+ L+L     L D A++   + Q    L  + L +C  I+ AG+ W+  G  +L +L+L+GT+ T TAL +I +RY YS +  R A  F
Sbjct:  313 SRSEFPFKVTDISLMALGERTPYLETLLLSGCNMLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLLSDGMKRDFGLEGLQALCGDLDEVQHLHLHGCFQISTTAMRAIANGLGAPLRSLSLSNCPKLTLNGMQALWEHCASLEYLSLNGCG---ENIVDNFFRPLVRRPAACLRTLELEDAECLTHTGVAYLVAGCPQLDKLNLSGCVGLNDEAMLHLGESQFYPGLRHLHLTNCTNISDAGLSWMSDGVDSLYTLSLRGTRCTYTALRVIADRYRYSHM-VRNANFF 643
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig921.17272.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Hypothetical1.580e-10895.73leucine rich repeat calmodulin binding protein n=1... [more]
Hypothetical2.050e-1548.06protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig921contigE_fasciculatus_S2_contig921:3447..7660 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score356.7
Seed ortholog evalue1.5e-95
Seed eggNOG ortholog2880.D8LPS0
Model size1236
KEGG koko:K10268
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.modulation by host of viral RNA genome replication
EggNOG OGsKOG1947@1,KOG1947@2759,KOG4341@1,KOG4341@2759
Cds size1236
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig921.17272.1prot_E_fasciculatus_S2_contig921.17272.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig921 3447..7660 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842571.2781494-CDS-E_fasciculatus_S2_contig921:3446..36021696842571.2781494-CDS-E_fasciculatus_S2_contig921:3446..3602Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig921 3447..3602 +
1696842571.2915745-CDS-E_fasciculatus_S2_contig921:3862..39701696842571.2915745-CDS-E_fasciculatus_S2_contig921:3862..3970Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig921 3863..3970 +
1696842571.3027773-CDS-E_fasciculatus_S2_contig921:4309..44441696842571.3027773-CDS-E_fasciculatus_S2_contig921:4309..4444Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig921 4310..4444 +
1696842571.3140452-CDS-E_fasciculatus_S2_contig921:5160..53611696842571.3140452-CDS-E_fasciculatus_S2_contig921:5160..5361Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig921 5161..5361 +
1696842571.3294559-CDS-E_fasciculatus_S2_contig921:5947..61501696842571.3294559-CDS-E_fasciculatus_S2_contig921:5947..6150Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig921 5948..6150 +
1696842571.3406515-CDS-E_fasciculatus_S2_contig921:6886..71241696842571.3406515-CDS-E_fasciculatus_S2_contig921:6886..7124Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig921 6887..7124 +
1696842571.358226-CDS-E_fasciculatus_S2_contig921:7465..76601696842571.358226-CDS-E_fasciculatus_S2_contig921:7465..7660Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig921 7466..7660 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig921.17272.1

>prot_E_fasciculatus_S2_contig921.17272.1 ID=prot_E_fasciculatus_S2_contig921.17272.1|Name=mRNA_E_fasciculatus_S2_contig921.17272.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=412bp
IGHWVLTRLFRGCRALETLSLARCSRVGDEELKELGVGCRGLVRLDLKDC
NQVSDTGLLEVARRCSSLTVLELSRSELPFKVGDVTLMALGEGCPGLQRL
SVKGCDGVTDVGLAWMSSGCPALEYLDVSGCVKVSNAGVTSLCERCPLLE
HLGMASLKHVTDIGVARLGGSCTRLTHLDLSGIVNLSDGMQRDFALTGVQ
ALAKGCTGLQTLVLDGCFQISKTALRAVGGGLRSLKRLSLARCPGLSQEG
LSAVAKGCPNLTELNLPNCGGAVTDAVVTAFARGCRRLRRLCLRGVVGVP
PPLGAPGILAVCSLCRDLEVLDLREVWSLEDSALVGFHDHQMEKLEKVVL
MDCPKITGAGVQWLVAGCPALSSLNLKGTKATLTALNIIKERYPYSRIKA
RKAGGFESTRA*
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mRNA from alignment at E_fasciculatus_S2_contig921:3447..7660+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig921.17272.1 ID=mRNA_E_fasciculatus_S2_contig921.17272.1|Name=mRNA_E_fasciculatus_S2_contig921.17272.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4214bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig921:3447..7660+ (Ectocarpus fasciculatus EfasUO2)
ATTGGGCACTGGGTTCTGACGAGACTGTTTCGGGGGTGCCGTGCGCTCGA
GACTTTGTCGCTGGCGCGCTGCTCCCGGGTGGGAGACGAGGAGCTCAAAG
AGCTCGGGGTGGGGTGCCGTGGACTCGTACGTCTAGACCTGAAAGACTGC
AACCAGGTAACTGCCCCCATCGTCTTATCGGGCCCATAGTCTTATCGGGA
ACAGTTCCGAAAGGAAAAAATGATTTAACCCGTCGTGCAGTTGGGGAATG
ATCCACCGTTTGTCTTCAGAACGGAATTGAACGATACCTGGAGAGTTTGA
AGCCCTCCCTCTGTATGACAACTACTGACCCTCGACTGCGACGGTGATTT
CCCCGTTGCTTTGCGGTATCCACCCGCACCGCGTGCATGGCGTGGTGCGC
GAATAAATATAAAAAGGTATCCGATACGGGCCTGCTGGAGGTGGCAAGGC
GGTGCAGTTCGCTGACCGTCCTGGAGTTGTCACGTTCAGAGCTGCCCTTC
AAGGTTGGCGATGTTACGCTGATGGTGAGAAGCGAAGCACCAGGAAGGAG
TCTTCAATTCGCAACACCACAGAACCCCCTCCGTGCTCTCTCCTCGGCGT
TGTTGACCAACTGAAGCCATCGACCGAAGACAGCTGAAGCCATTGACTGA
AGCCGTTGTCGCGAAACGGATGGCATATTAAATTGCGTAGTAAACCACCA
CGCTTGCCAGGATTCTGGGTCATGGAGGTCAGGCACAAGCTGTCGACGAA
TAAAAGGCACAGGACAACCCAATACAAGTCTCTCTTTGCCATGGTGCTCT
GACCCAATCTGATCCGACCATTCCTTGTTTTTCCGTCCTTCTTCGTAACC
CGGCCGAGCTCAGGCTCTGGGTGAGGGTTGCCCGGGACTCCAACGGCTTA
GCGTGAAGGGTTGCGACGGTGTAACGGATGTTGGCCTTGCGTGGATGTCC
AGCGGCTGCCCTGCCCTGGAATATCTGGATGTGTCTGGTTGCGTCAAGGT
ATGCAAAAGCTAGTTCGCTGCCATTAGACTTCCGATGGCGTTGCTTGTGC
TCAATACAGATGTCTTCGAAATACGACCGAGGGCTGTCTTGTGATACGAC
TACACCTTCGATTACGTAACAAGGAGTCCCACTGAGACACTACGGTTTCT
TTTGAAAGTGACGTGCATAATCTGCCTTAGTAACTTCACACCTTTTGAAA
GTGACGTGCATAATCAGCCTTAGTGACTTCACACCAGCGTAGCATTGCAT
CAGAATACAAAACGAGGCACCTGCTCCCTTTTCCTTCGAAAATTTTTCCC
ACCATGTCCTATTTTTGTACCTCGTTGTGTACACGGTCGGGAATCAGAAG
AGGTTCCCGTCACGGAGCTATGATGTCATAATTTCTGACCCATATCCATG
GTTGTGTTGGGTAAGGTACGGATACCTGTGGTAAGGTTCGGGGTATCGTA
CCGAGGTCACCAACGGATCGGATACGGGTGTAGTACCAAGTGTACCGAAC
GATCGGTTACGTTGGTACGTGCCATGCCTACACAGCCCTTTGAAACCGCC
GTTTCAATCCAAACAAGCAAGACCATCTGTTATTGTGAAGCCGTTGGACT
CTACAATAGGATATCTTTCCCAATTGACCCCTAGCACTATTTCCTGCCAT
TTTGTAACCCTAACGCGAGAGTCACGTAATCTCCCCCATGAACTTGGTTG
CTGGACGCCTCGAGGTTTCCAACGCTGGAGTCACAAGCCTCTGCGAGAGG
TGCCCCCTGCTGGAGCATCTCGGGATGGCGTCACTAAAGCACGTCACCGA
CATCGGCGTGGCCAGGCTCGGTGGCTCGTGCACGAGGCTGACACACCTGG
ACTTGTCCGGGATTGTCAACCTTTCCGACGGCATGCAGAGAGACTTTGCC
CTCACGGGGGTCCAGGTGACGACCCGCCACGTAACGTGCACGCCTGCTCA
ACCGCCTGGCAACGGCTTCTGTCGGTTTGTCTGGTTTCGCCTCGATCTTC
CGCTCAAGGGAAACACAGATCGTTCCGCGGGAAACCGGGGTGTGCCTGCC
GTTTGAGAACATACTTCCGCTGGTCTCGGTTAGCGTTTTTGTTGAATGGC
ATGCGAAGGGTCTTTGGGGGCCGCTACGCCGGGTCCGACTGGCTGTCTTT
TTCGCTAGCATGGTGAAAGACCTCGGAGTTCGTTTGGAGGTAGTGCTGCT
GTAGCTGGCAACAGCATAGTAGCTGACGGGTTCACCGACGAAACAGCAAC
TTCTCCTAACAAGTTCTGCGGTTACCGCCATGTGGTTACCCTATAGTTTG
CACGAACGTGCTACTTTGTACAGTACAAACAGCCAGTCTTCTCTTGAAAA
TGTCTCTGCGGCTTGTTCTTTTCCGCCCAGAATCGTCTGCATTGCGAAAC
ACACTCTTGGGCGTTCGCCCCCGTCTCGTGAAAAGACCGGAGCTACAAAC
AAATACTGACGTCTCGACTTGAAAACCCATTGTCGACCAAAACACAACCA
GGCGCTCGCAAAAGGCTGCACAGGGCTGCAAACGCTAGTCCTAGACGGGT
GCTTCCAGATCTCCAAGACCGCGCTCCGGGCTGTGGGCGGCGGGCTGCGC
TCACTCAAGCGGCTGTCTCTGGCCCGGTGTCCCGGTCTTTCCCAGGAAGG
CTTGTCTGCCGTGGCGAAAGGTTGCCCAAACTTGACGGAGCTGAACCTCC
CTAAGTGAGTGGGGTAGTCTTACTAATAAGTTTCGTTCGGACGAGGGGAG
ATAAAGCTCAGGCAGATGTGTTGGGAGAGTACCCCACCGTTGATTTTTGT
GTCACTCCCTTCGCGGGAGGGGGCGAGGGTGGGCAGCGAGGGAGAAGCAG
GGAGTTACAGCGTGCGATTCTGGTCAGAATGTTGGTGTTGGTTTCGCTGC
GGGGCAGATTCAGAGTACATCTAGTTGGCATTTCGATGTTGTTTTCTCTC
TCTACTGATGCCCGGGGTATCGAGCATGTTTCGCTACTGGATATTACCGT
CCAGAACAAAGAGTCCATAGCAATTCATAGGCTTCTTCACCATCCAAAGT
GCCACTCAAGTCCTTGTGTGACTCTCAATATCATCAACAGTGAAGGGTGA
AAGTGAGGACATGGCGTATATAATTTTTTGGCATGTTTAGTACGCGTACC
CGATCTACTCCGGTTTCCGATGTAACGCGAACCACCAAGGGGGTAATACA
CGTCTGGTGAGACGCGCAAGATAAGCGAAACTAGAGAGGTACCGTAGGCG
TTGTGTCAGTGGTGGGGAAAAGTATCCAGCGCGGCATTGCTGCTGTCGTA
CTTCATGACAACATATCATCGGTAAGACAAACGTCCTTCACGACCCATCT
CAACCGCCACATATATTCCGAGAACACGATGAGAAATGATGGCGAACAAG
CTCACTGACGACACGAAGCCGTTGCTACGTTCGGTCGCAGTTGCGGGGGC
GCCGTAACCGACGCTGTCGTTACGGCGTTCGCGAGGGGTTGTCGACGCCT
TCGAAGGCTGTGCCTGAGGGGAGTCGTAGGCGTACCACCGCCCCTGGGCG
CGCCAGGAATCCTGGCCGTGTGCAGCCTCTGTCGAGATCTGGAAGTGTTG
GACCTTCGAGAGGTGTGGAGCCTGGAAGATTCCGCCCTGGTCGGGTTCCA
CGACCACCAGATGGAGAAGCTCGAGAAAGTGAGTGGTACGGAGTCTCTCG
CCTTGAAACAAGTGTGCGGATCCATGATGAAAATGTTATTAGTAAGGAGG
CGAGTGTGACGCTGAGTTAACGTACACCACCAGCATGTCGACAGAGGAAA
TGCGGCCAGAGAGTAAGCTGTGCGTGCTTCATGGATGATAATTCCGTTGA
GTGTCACACCACGCACGGGTGTGTGGCCGGTGGAAATCACAACAAATTTC
CAAGATTCAAGTGCTGTACCTTGCGAACCAGCAATGGTGACCGAGACCTC
GAAAATCTCGGCAACGTTTCGAGCAACTTGACCCTTTCTCCTCCAATCGT
TGTTGTCTTACACTCACAGGTCGTCCTGATGGATTGTCCCAAGATCACCG
GAGCCGGGGTGCAGTGGCTGGTGGCGGGATGCCCGGCGTTGTCCTCTCTA
AACCTGAAGGGCACCAAGGCCACGCTCACGGCGCTCAACATCATTAAGGA
GCGCTACCCGTACAGCCGCATAAAGGCAAGAAAGGCGGGCGGCTTTGAGT
CAACTAGAGCATGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig921:3447..7660+

>mRNA_E_fasciculatus_S2_contig921.17272.1 ID=mRNA_E_fasciculatus_S2_contig921.17272.1|Name=mRNA_E_fasciculatus_S2_contig921.17272.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1236bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig921:3447..7660+ (Ectocarpus fasciculatus EfasUO2)
ATTGGGCACTGGGTTCTGACGAGACTGTTTCGGGGGTGCCGTGCGCTCGA
GACTTTGTCGCTGGCGCGCTGCTCCCGGGTGGGAGACGAGGAGCTCAAAG
AGCTCGGGGTGGGGTGCCGTGGACTCGTACGTCTAGACCTGAAAGACTGC
AACCAGGTATCCGATACGGGCCTGCTGGAGGTGGCAAGGCGGTGCAGTTC
GCTGACCGTCCTGGAGTTGTCACGTTCAGAGCTGCCCTTCAAGGTTGGCG
ATGTTACGCTGATGGCTCTGGGTGAGGGTTGCCCGGGACTCCAACGGCTT
AGCGTGAAGGGTTGCGACGGTGTAACGGATGTTGGCCTTGCGTGGATGTC
CAGCGGCTGCCCTGCCCTGGAATATCTGGATGTGTCTGGTTGCGTCAAGG
TTTCCAACGCTGGAGTCACAAGCCTCTGCGAGAGGTGCCCCCTGCTGGAG
CATCTCGGGATGGCGTCACTAAAGCACGTCACCGACATCGGCGTGGCCAG
GCTCGGTGGCTCGTGCACGAGGCTGACACACCTGGACTTGTCCGGGATTG
TCAACCTTTCCGACGGCATGCAGAGAGACTTTGCCCTCACGGGGGTCCAG
GCGCTCGCAAAAGGCTGCACAGGGCTGCAAACGCTAGTCCTAGACGGGTG
CTTCCAGATCTCCAAGACCGCGCTCCGGGCTGTGGGCGGCGGGCTGCGCT
CACTCAAGCGGCTGTCTCTGGCCCGGTGTCCCGGTCTTTCCCAGGAAGGC
TTGTCTGCCGTGGCGAAAGGTTGCCCAAACTTGACGGAGCTGAACCTCCC
TAATTGCGGGGGCGCCGTAACCGACGCTGTCGTTACGGCGTTCGCGAGGG
GTTGTCGACGCCTTCGAAGGCTGTGCCTGAGGGGAGTCGTAGGCGTACCA
CCGCCCCTGGGCGCGCCAGGAATCCTGGCCGTGTGCAGCCTCTGTCGAGA
TCTGGAAGTGTTGGACCTTCGAGAGGTGTGGAGCCTGGAAGATTCCGCCC
TGGTCGGGTTCCACGACCACCAGATGGAGAAGCTCGAGAAAGTCGTCCTG
ATGGATTGTCCCAAGATCACCGGAGCCGGGGTGCAGTGGCTGGTGGCGGG
ATGCCCGGCGTTGTCCTCTCTAAACCTGAAGGGCACCAAGGCCACGCTCA
CGGCGCTCAACATCATTAAGGAGCGCTACCCGTACAGCCGCATAAAGGCA
AGAAAGGCGGGCGGCTTTGAGTCAACTAGAGCATGA
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