mRNA_E_fasciculatus_S2_contig917.17235.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig917.17235.1
Unique NamemRNA_E_fasciculatus_S2_contig917.17235.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig917.17235.1 vs.
Match: Dimer_Tnp_hAT (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFP4_ECTSI)

HSP 1 Score: 524 bits (1349), Expect = 4.670e-175
Identity = 278/368 (75.54%), Postives = 301/368 (81.79%), Query Frame = -2
Query:  747 EELCSLIEPVAKLIATCQQTHVPTGQAALLGLAALKLSTLNVDVPLDIPTPARKPTQGGTEGFGGEEGTTARAHNDLTRVGREAREHLASALNWRDFDARYKSTVSDRTDLVFDMQMGLHPCTAGLEYVDRLAPTEGHAAVVKKSVTDKLIALAVELAAKEAER----------------------NAHPTFANAESQKEATTSAIMAGLGLIKTRDEGASASPIERARAELEALRSLDVGALSGDVGCEGVLKWWKRWEHSYPLLARAARVVFAAPASVMVQERDLSAAGRMMTSSRSTGDAKYVEMVLFLHGNLDLIPENIPELPAGGVDGPHTKIPGRLSNPMPELHVLDGAFGPLDLTDGDESE 1784
            +EL SLI+PVA++IATCQQTH PTGQAA+LGLAALKLSTLN D PLDI TPA KPTQG TEG GGE+ TTARAH DLTRVGREAREHLASAL+WRDFD RYKSTV+  T LVFDMQMGLHPCTA L+YV RLAPTEGHAAVVKK++TDK+IALA +LA K+AER                      N +P FA+A   KEATT+AIMAGLGLI TRDEG SASPIERARAELE LRS    AL GD  CEGVL WWKR EHSYPLLAR ARVVFAAPASVMVQERDL +AGRMMTSSRSTGDAKYVEMVLFLHGN+DL+PE IPELPA GV+G  TKIPGRLSNPM ELH LDG FGP+DLT+ DESE
Sbjct:  398 DELYSLIQPVAEVIATCQQTHFPTGQAAVLGLAALKLSTLNADAPLDILTPASKPTQGATEGAGGEQRTTARAHKDLTRVGREAREHLASALHWRDFDKRYKSTVAKSTGLVFDMQMGLHPCTADLQYVSRLAPTEGHAAVVKKNITDKIIALAAKLADKKAERKGIEAEQGEPAAKRAPQASAPGNTYPMFASARYHKEATTTAIMAGLGLIATRDEGTSASPIERARAELETLRSASDDALFGDTSCEGVLNWWKRKEHSYPLLARVARVVFAAPASVMVQERDLGSAGRMMTSSRSTGDAKYVEMVLFLHGNVDLLPEIIPELPADGVNGVQTKIPGRLSNPMLELHALDGEFGPVDLTNDDESE 765          
BLAST of mRNA_E_fasciculatus_S2_contig917.17235.1 vs.
Match: Dimer_Tnp_hAT (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK4_ECTSI)

HSP 1 Score: 371 bits (952), Expect = 7.520e-117
Identity = 226/385 (58.70%), Postives = 256/385 (66.49%), Query Frame = -2
Query:  747 EELCSLIEPVAKLIATCQQTHVPTGQAALLGLAALKLSTLNVDVPLDIPTPARKPTQGGTEGFGGEEG---TTARAHNDLTRVGREAREHLASALNWRDFDARYKSTVSDRT-DLVFDMQMGLHPCTAGLEYVDRLAPTEGHAAVVKKSVTDKLIALAVELAAKEAERN-------------AHPT---------FANAESQKEATTSAIMAGLGLIKTRDEGASASPIER----ARAELEALRSLDVGALSGDVGCEGVLKWWKRWEHSYPLLARAARVVFAAPASVMVQERDLSAAGRMMTSSRSTGDAKYVEMVLFLHGNLDLIPENIPELPAGGVDGPHTKIPGRLSNPMPELHVLDGAFGPLDLT---------DGDESE 1784
            +EL SLI+PVA+LI TCQQTHVPTGQAA+LGLA LKLST NVD  LD+ TP R   QG  EG GG E    +  R HN LT+VGR+AREHLASAL+ R FD  YKS  S++T D VFDMQMGLHP TA L+YVD+L  TE HAA VKKS+TDK+IALAVELA KE ER              A P           A A ++K+   +A  A LGL K R  G  AS        ARAELE LR ++ G L+ D+ CEGVL+WWK+W   YPLLARAARVVF APAS  V ERD + A  MM SSRS GDAKYVEMVLFLHGNLDLIPE IPEL    V     KIPGRLSNP+PELH LDG  G +DLT         +G+ESE
Sbjct:  290 DELYSLIKPVAELIVTCQQTHVPTGQAAVLGLATLKLSTFNVDARLDVLTPVR--AQGWPEGTGGGERKATSVPRLHNHLTQVGRDAREHLASALDRRYFDRCYKSADSEKTTDFVFDMQMGLHPTTADLQYVDKLTSTEVHAAFVKKSITDKIIALAVELAEKEMERKQAGPEQDESVAKRARPAAAPGSLQTAVAKARNKKDDAATAKFASLGLFKKRRGGGEASQQPTFEPMARAELETLRGVEAGTLTDDLSCEGVLEWWKKWGRLYPLLARAARVVFGAPASAAVLERDFTDAWCMMASSRSAGDAKYVEMVLFLHGNLDLIPEQIPELRDEDVQA---KIPGRLSNPIPELHGLDGTLGLVDLTNDEGGVGPGEGEESE 669          
BLAST of mRNA_E_fasciculatus_S2_contig917.17235.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEK6_9PHAE)

HSP 1 Score: 289 bits (739), Expect = 6.140e-88
Identity = 187/371 (50.40%), Postives = 217/371 (58.49%), Query Frame = -2
Query:  753 EELCSLIEPVAKLIATCQQTHVPTGQAALLGLAALKLSTLNVDVPLDIPTPARKPTQGGTEGFGGEEGTTARAHNDLTRVGREAREHLASALNWRDFDARYKSTVSDRT-DLVFDMQMGLHPCTAGLEYVDRLAPTEGHAAVVKKSVTDKLIALAVELAAKEAER----------------------NAHPTFANAESQKEATTSAIMAGLGLIKTRDEGASASPIER----ARAELEALRSLDVGALSGDVGCEGVLKWWKRWEHSYPLLARAARVVFAAPASVMVQERDLSAAGRMMTSSRSTGDAKYVEMVLFLHGNLDLIPENIPELPAGGVDGPHTKIPGRLSNPMPELHVLDGAFGPLDLTDGDE 1784
            +EL S+I+PVA+LI T QQTHVPTGQAA LGLAALKLST NVD  LD+ TPAR   QG  EG GG E          T V R                  YK   S +T D VFDMQMGLHP TA L+YVD+LA ++ HAA V K +TDK+I LAVELA KE ER                      ++HP  A A ++ E   +A    L L K R  GA+AS        A AE E LR ++ G+L+ D+GCEGVLKWW++WE SYPLLARAARV F APA+                     GDAKYVEMVLFLHG LDL PE IPEL    +   H KIPGRLSNP+PELH LDG  GP+DLT  +E
Sbjct:  116 DELYSVIKPVAELIVTYQQTHVPTGQAAALGLAALKLSTFNVDARLDVLTPAR--AQGRPEGAGGVE-------PKATSVPR-----------------CYKPADSAKTTDFVFDMQMGLHPTTADLQYVDKLASSKVHAAFVTKRITDKIITLAVELATKEMERKQAGPEQHESVAKQARPAAAPKSSHPAVARARNKNEDAATAKFTSLRLFKKRRVGANASQQPTFEPMACAEFETLRGVEAGSLTDDLGCEGVLKWWEKWEGSYPLLARAARVDFGAPAA---------------------GDAKYVEMVLFLHGKLDLFPEQIPELRDEDI---HAKIPGRLSNPVPELHGLDGTLGPVDLTHDEE 436          
BLAST of mRNA_E_fasciculatus_S2_contig917.17235.1 vs.
Match: Dimer_Tnp_hAT (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE)

HSP 1 Score: 281 bits (719), Expect = 4.970e-82
Identity = 177/357 (49.58%), Postives = 218/357 (61.06%), Query Frame = -2
Query:  747 EELCSLIEPVAKLIATCQQTHVPTGQAALLGLAALKLSTLNVDVPLDIPTPARKPTQGGTEGFGGEEG---TTARAHNDLTRVGREAREHLASALNWRDFDARYKSTVSDRTDLVFDMQMGLHPCTAGLEYVDRLAPTEGHAAVVKKSVTDKLIALAVELAAKEAERNA-----HPTFANAESQKEATTSAIMAGLGLIKTRDEGASASPI---ERARAELEALRSLDVGALSGDVGCEGVLKWWKRWEHSYPLLARAARVVFAAPASVMVQERDLSAAGRMMTSSRSTGDAKYVEMVLFLHGNLDLIPENIPELPAGGVDGPHTKIPGRLSNPMPELHVLDGAFGPLDLTDGDESE 1784
            +EL S+I+P A++I  CQQT VPTGQ A+L LAALKL TLNVD PL+I TPARK  Q  T G GG E    +T R H+  T V +  R+H+  +++W  FD RYKS  S  TD V   +    PCT       RL     H   V  S T    A A E AAK A + A     HP F    +++E  T+ + A LGL     +  +  P    + ARAEL  LR++  G+L+  + CE VLKWWK W H+YPLLAR ARVVF APAS  V ERD S AGRMMTSSRST D+KYVEM++FLHGNLDLIPE+I +L         TKIPGRL+NP+  L  LDG F P+DLTD + S+
Sbjct:  377 DELYSIIKPAAQVIVKCQQTSVPTGQVAVLALAALKLITLNVDSPLEILTPARKLAQAETSGIGGGERPATSTPREHSLSTGVAKGTRQHICESVDWWWFDKRYKSAESQDTDYVSTCRW---PCTR-----PRLTCAALHTGDV--STTPAGSAAADEPAAKRARQAAAPGSVHPLFKAPVNKREEATTNMYASLGLFGPGGDEQNEEPPSFEQTARAELTNLRAVQGGSLAPGLSCEDVLKWWKMWAHAYPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRSTMDSKYVEMIMFLHGNLDLIPEDITKLTEAAA---RTKIPGRLANPVERLEQLDGVFAPVDLTDEEASD 720          
BLAST of mRNA_E_fasciculatus_S2_contig917.17235.1 vs.
Match: Dimer_Tnp_hAT (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY1_9PHAE)

HSP 1 Score: 251 bits (641), Expect = 5.830e-73
Identity = 146/282 (51.77%), Postives = 184/282 (65.25%), Query Frame = -2
Query:  747 TTARAHNDLTRVGREAREHLASALNWRDFDARYKSTVSDRTDLVFDMQMGLHPCTAGLEYVDRLAPTEGHAAVVKKSVTDKLIALAVELAAKEA----ERNAHPTFANAESQKEATTSAIMAGLGLIKTRDEGASASPIERARAELEALRSLDVGALSGDVGCEGVLKWWKRWEHSYPLLARAARVVFAAPASVMVQERDLSAAGRMMTSSRSTGDAKYVEMVLFLHGNLDLIPENIPELPAGGVDGPHTKIPGRLSNPMPELHVLDGAFGPLDLTDGDESE 1580
            +T R H+ LT V R  R+H+  +++WR FD RYKS  S  TD VFDMQM LHP TA L YVD+LA T   A  VK ++TDK+I+LAV+LA   A    + +  P ++ A  +  A  +   A  G   +++E  S    + ARAEL  LR++  G+L+  + CE VLKWWK W H+YPLLAR ARVV  A AS  V E D S AGRMMTSSRST D+KYVEM+LFLHGNLDLIPE+I +L         TKIPGRL+NP+  L  LDGAF P+DLTD + S+
Sbjct:  220 STPREHSLLTGVARGTRQHMCESVDWRWFDKRYKSAKSQDTDYVFDMQMALHPTTADLRYVDKLASTSAFAGAVKSTITDKVISLAVKLAEAAALHTGDGSTTPAWSAAADKPAAKRARQAAAPG---SKEEPPSFE--QTARAELTKLRAVQGGSLAAGLRCEDVLKWWKMWAHAYPLLARVARVVIGALASAAVLEHDFSNAGRMMTSSRSTMDSKYVEMILFLHGNLDLIPEDITKLTEAVA---RTKIPGRLANPVEGLEQLDGAFAPVDLTDEEASD 493          
BLAST of mRNA_E_fasciculatus_S2_contig917.17235.1 vs.
Match: Dimer_Tnp_hAT (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JML0_9PHAE)

HSP 1 Score: 232 bits (592), Expect = 9.810e-69
Identity = 134/262 (51.15%), Postives = 165/262 (62.98%), Query Frame = -2
Query:  747 LASALNWRDFDARYKSTVSDRTDLVFDMQMGLHPCTAGLEYVDRLAPTEGHAAVVKKSVTDKLIALAVELAAKEAERNAHPTFANAESQKEATTSAIMAGLGLIKTRDEGASASPI---ERARAELEALRSLDVGALSGDVGCEGVLKWWKRWEHSYPLLARAARVVFAAPASVMVQERDLSAAGRMMTSSRSTGDAKYVEMVLFLHGNLDLIPENIPELPAGGVDGPHTKIPGRLSNPMPELHVLDGAFGPLDLTDGDESE 1523
            +  +++WR FD RYKS  S  TD VFDMQM LHP TAGL YV++LA T   A  VK ++TDK+I L V LA   A    H    +     E  T+ + A LGL     +G +  P    + ARAEL  LR++  G L+  + CE VLKWWK W H+YPLLAR ARVVF APAS  V E   S AGRM TSSRST D+ YVEM++FLHGNL+LIPE+I +L         TK PGRL+NP+  L  LDGAF P+DLTD + S+
Sbjct:    1 MCESVDWRRFDKRYKSAESQDTDYVFDMQMALHPTTAGLRYVEKLASTSAFAGAVKSTITDKVIFLTVRLAEAAA---LHTGDGSTTPAGEEATTNMHASLGLFGPGVDGQNEEPQSFKQTARAELTKLRAVQGGRLAARLRCEDVLKWWKMWAHAYPLLARVARVVFGAPASAAVLECYFSNAGRMTTSSRSTMDSTYVEMIMFLHGNLNLIPEDITKLTEVVA---RTKFPGRLANPVDGLEPLDGAFAPVDLTDEEASD 256          
BLAST of mRNA_E_fasciculatus_S2_contig917.17235.1 vs.
Match: Dimer_Tnp_hAT (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ3_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 1.370e-32
Identity = 71/111 (63.96%), Postives = 81/111 (72.97%), Query Frame = -2
Query:  747 WEHSYPLLARAARVVFAAPASVMVQERDLSAAGRMMTSSRSTGDAK-YVEMVLFLHGNLDLIPENIPELPAGGVDGPHTKIPGRLSNPMPELHVLDGAFGPLDLTDGDESE 1076
            W H YPLLAR ARVVF APAS  V ERD S AGRMMTSSR T D+  YVEM+LFLHGNLDLIPE+I +L         +KIPGRL+NP+  L  LDGAF P+DLTD + S+
Sbjct:    2 WAHVYPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRRTMDSTTYVEMILFLHGNLDLIPEDITKLTEAVA---RSKIPGRLANPVEGLEQLDGAFAPVDLTDEEASD 109          
BLAST of mRNA_E_fasciculatus_S2_contig917.17235.1 vs.
Match: Dimer_Tnp_hAT (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGU9_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 2.700e-31
Identity = 67/122 (54.92%), Postives = 77/122 (63.11%), Query Frame = -2
Query:  753 DVGCEGVLKWWKRWEHSYPLLARAARVVFAAPASVMVQERDLSAAGRMMTSSRSTGDAKYVEMVLFLHGNLDLIPENIPELPAGGVDGPHTK-IPGRLSNPMPELHVLDGAFGPLDLTDGDE 1115
            ++ CE VLKWWKRW  SYPLLARA RVVF APAS                       A YVEM+LFLHGNLDLIP++IP LP  G D    K +PGRL NP P+L  + GAFGP+DLT+ DE
Sbjct:   31 ELSCESVLKWWKRWMSSYPLLARATRVVFGAPAS-----------------------AAYVEMILFLHGNLDLIPDDIPALPTDGPDSATNKHMPGRLKNPNPKLERISGAFGPVDLTEEDE 129          
BLAST of mRNA_E_fasciculatus_S2_contig917.17235.1 vs.
Match: Dimer_Tnp_hAT (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L6_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 3.980e-30
Identity = 60/79 (75.95%), Postives = 66/79 (83.54%), Query Frame = -2
Query:  879 DVGCEGVLKWWKRWEHSYPLLARAARVVFAAPASVMVQERDLSAAGRMMTSSRSTGDAKYVEMVLFLHGNLDLIPENIP 1115
            ++ C+ VLKWWKRW  SYPLLARAARVVF APAS  V E D   AGR+MTSSRST DAKYVEM+LFLHGNLDLIPE+IP
Sbjct:   31 ELSCDSVLKWWKRWMSSYPLLARAARVVFGAPASAAVLEGDFGDAGRIMTSSRSTTDAKYVEMILFLHGNLDLIPEDIP 109          
BLAST of mRNA_E_fasciculatus_S2_contig917.17235.1 vs.
Match: Dimer_Tnp_hAT (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW12_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 1.860e-27
Identity = 66/109 (60.55%), Postives = 75/109 (68.81%), Query Frame = -2
Query:  747 HSYPLLARAARVVFAAPASVMVQERDLSAAGRMMTSSRSTGDAKY-VEMVLFLHGNLDLIPENIPELPAGGVDGPHTKIPGRLSNPMPELHVLDGAFGPLDLTDGDESE 1070
            H+Y LL   ARVVF APAS    ERD S AGRMMTSSRS  D+KY VEM+LFLHGNLDLIPE+I  L         T  PGRL+NP+  L  LDGAF P+DLTD + S+
Sbjct:    4 HAYLLLTGVARVVFGAPASAAALERDFSNAGRMMTSSRSAMDSKYYVEMILFLHGNLDLIPEDITTLTEAVA---RTMFPGRLANPVEGLKQLDGAFTPVDLTDEEASD 109          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig917.17235.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
Dimer_Tnp_hAT4.670e-17575.54domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Dimer_Tnp_hAT7.520e-11758.70domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Uncharacterized6.140e-8850.40protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Dimer_Tnp_hAT4.970e-8249.58domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Dimer_Tnp_hAT5.830e-7351.77domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Dimer_Tnp_hAT9.810e-6951.15domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Dimer_Tnp_hAT1.370e-3263.96domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Dimer_Tnp_hAT2.700e-3154.92domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Dimer_Tnp_hAT3.980e-3075.95domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Dimer_Tnp_hAT1.860e-2760.55domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig917contigE_fasciculatus_S2_contig917:5047..6831 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size1785
Hectar predicted targeting categoryother localisation
Exons1
Cds size1089
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842568.1632135-UTR-E_fasciculatus_S2_contig917:5046..57421696842568.1632135-UTR-E_fasciculatus_S2_contig917:5046..5742Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig917 5047..5742 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842568.1753657-CDS-E_fasciculatus_S2_contig917:5742..68311696842568.1753657-CDS-E_fasciculatus_S2_contig917:5742..6831Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig917 5743..6831 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig917.17235.1prot_E_fasciculatus_S2_contig917.17235.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig917 5743..6831 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig917.17235.1

>prot_E_fasciculatus_S2_contig917.17235.1 ID=prot_E_fasciculatus_S2_contig917.17235.1|Name=mRNA_E_fasciculatus_S2_contig917.17235.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=363bp
MHIQTPVPGVLPRGAYRSLSSPSVRSSGPNAPSSTCSSGMGFDNRPGILV
WGPSTPPAGSSGMFSGMRSRLPCRKRTISTYLASPVLLDDVIMRPAALRS
RSCTITDAGAAKTTRAALARSGYECSHLFHHLRTPSQPTSPDSAPTSKLL
SASSSARARSIGDALAPSSLVLMSPRPAIIADVVASFWLSALANVGCAFR
SASFAASSTAKAMSLSVTLFLTTAACPSVGASLSTYSRPAVHGCSPICMS
NTKSVLSETVDLYRASKSRQFRAEARCSRASRPTRVRSLCALAVVPSSPP
KPSVPPCVGLRAGVGMSSGTSTFKVLSLSAARPSKAACPVGTWVCWHVAM
SFATGSMREHSSS
back to top

mRNA from alignment at E_fasciculatus_S2_contig917:5047..6831+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig917.17235.1 ID=mRNA_E_fasciculatus_S2_contig917.17235.1|Name=mRNA_E_fasciculatus_S2_contig917.17235.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1785bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig917:5047..6831+ (Ectocarpus fasciculatus EfasUO2)
TAATCACGCCGTGCTGGGTCTAAAGCAGCAGCAAAGGTTACAGAAGCCTG AGTACCCAAATTTGTAATGGATTGTGTCTTCGATGGACGGGATTCACTGG GCCCTTCGAGTCAAAACACGTCAGTCGTTTAGAGCTGTTGGCGATAGAAA CGTCACTACTGGCAGATGGCGGCCAGCTGTGGGCTGTCCCGCTGACCTCC TTCATTTTCGTGTTGCATCACCCCTCTATGTAGATGGCTCTTTTATGTTC GCATGAGCCTACCCCGGAGGGACTTAAAACATCAGTACAATTTTATCAAG TCTGGGTGACATGGGAGAGGTGAATTTAACAGCAAGGTATTGGTAGGTGA AATGAGACAACACGGATTGCAGGTGTCCAAGCATACACACGGCCTCTGAT CTCTACACAAAACACAAATACACGTAAGGTTATCAAACACAAAGAGAAAC ACGCCACACCCTCACCCCCTGCCGGCCTATCGTCTGCTCTCAATCTACGA GCACGATCACGAGCGTAGACAAGCCGCCCCAGAATACTCTGTCGCAACCA ACACCGCGCATGCACCCAGTGCATGCTGTATCTTCCGCCGTCTGCCACAC GTGGTGACCCAATTCCACGTTGGGCACCCGATTCCTGCTTGGACATACCC CAACCATCAGTCTGCACCCCCTCCATTCGAAACAGGTGCGCAAAACATGC ACATTCAAACCCCGGTCCCCGGCGTCTTGCCGCGCGGCGCTTATCGCTCG CTTTCGTCGCCGTCGGTGAGGTCCAGCGGGCCGAACGCGCCGTCAAGCAC GTGCAGCTCCGGCATGGGGTTCGACAACCGCCCGGGAATCTTGGTGTGGG GTCCGTCAACTCCGCCGGCTGGCAGCTCCGGGATGTTCTCGGGAATGAGG TCCAGGTTACCGTGCAGAAAGAGGACCATCTCCACGTACTTGGCGTCACC GGTGCTTCTCGATGACGTCATCATGCGCCCAGCGGCGCTAAGATCTCGCT CCTGCACCATCACCGACGCGGGAGCCGCGAAGACAACGCGGGCTGCCCTA GCCAGGAGCGGGTACGAGTGCTCCCATCTCTTCCACCACTTGAGAACGCC CTCGCAGCCCACGTCGCCGGACAGTGCACCCACGTCTAAGCTCCTCAGCG CCTCGAGCTCGGCGCGAGCGCGCTCTATAGGCGACGCGCTCGCCCCCTCA TCCCTTGTCTTGATGAGTCCGAGGCCTGCCATAATCGCAGACGTCGTCGC CTCCTTCTGGCTTTCGGCGTTGGCGAACGTCGGGTGCGCGTTCCGTTCTG CCTCCTTCGCCGCCAGCTCGACAGCCAAGGCAATGAGCTTGTCGGTGACG CTCTTCTTGACGACCGCAGCATGCCCTTCCGTCGGGGCGAGCCTGTCAAC GTACTCGAGGCCAGCCGTACACGGGTGCAGCCCCATCTGCATGTCGAACA CCAAGTCCGTCCTATCAGAAACGGTAGACTTATATCGCGCGTCGAAGTCC CGCCAGTTTAGGGCCGAAGCGAGGTGTTCGCGAGCCTCCCGACCCACTCG AGTCAGGTCATTGTGCGCCCTTGCAGTCGTTCCTTCCTCACCGCCAAAGC CCTCGGTACCACCCTGTGTCGGCTTGCGCGCCGGGGTCGGGATGTCGAGC GGGACGTCGACGTTCAAGGTGCTGAGCTTGAGCGCCGCTAGGCCCAGCAA AGCAGCTTGCCCCGTGGGGACGTGGGTTTGCTGGCACGTGGCGATGAGCT TCGCAACCGGCTCGATGAGGGAACACAGCTCTTCG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig917:5047..6831+

>mRNA_E_fasciculatus_S2_contig917.17235.1 ID=mRNA_E_fasciculatus_S2_contig917.17235.1|Name=mRNA_E_fasciculatus_S2_contig917.17235.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1089bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig917:5047..6831+ (Ectocarpus fasciculatus EfasUO2)
ATGCACATTCAAACCCCGGTCCCCGGCGTCTTGCCGCGCGGCGCTTATCG
CTCGCTTTCGTCGCCGTCGGTGAGGTCCAGCGGGCCGAACGCGCCGTCAA
GCACGTGCAGCTCCGGCATGGGGTTCGACAACCGCCCGGGAATCTTGGTG
TGGGGTCCGTCAACTCCGCCGGCTGGCAGCTCCGGGATGTTCTCGGGAAT
GAGGTCCAGGTTACCGTGCAGAAAGAGGACCATCTCCACGTACTTGGCGT
CACCGGTGCTTCTCGATGACGTCATCATGCGCCCAGCGGCGCTAAGATCT
CGCTCCTGCACCATCACCGACGCGGGAGCCGCGAAGACAACGCGGGCTGC
CCTAGCCAGGAGCGGGTACGAGTGCTCCCATCTCTTCCACCACTTGAGAA
CGCCCTCGCAGCCCACGTCGCCGGACAGTGCACCCACGTCTAAGCTCCTC
AGCGCCTCGAGCTCGGCGCGAGCGCGCTCTATAGGCGACGCGCTCGCCCC
CTCATCCCTTGTCTTGATGAGTCCGAGGCCTGCCATAATCGCAGACGTCG
TCGCCTCCTTCTGGCTTTCGGCGTTGGCGAACGTCGGGTGCGCGTTCCGT
TCTGCCTCCTTCGCCGCCAGCTCGACAGCCAAGGCAATGAGCTTGTCGGT
GACGCTCTTCTTGACGACCGCAGCATGCCCTTCCGTCGGGGCGAGCCTGT
CAACGTACTCGAGGCCAGCCGTACACGGGTGCAGCCCCATCTGCATGTCG
AACACCAAGTCCGTCCTATCAGAAACGGTAGACTTATATCGCGCGTCGAA
GTCCCGCCAGTTTAGGGCCGAAGCGAGGTGTTCGCGAGCCTCCCGACCCA
CTCGAGTCAGGTCATTGTGCGCCCTTGCAGTCGTTCCTTCCTCACCGCCA
AAGCCCTCGGTACCACCCTGTGTCGGCTTGCGCGCCGGGGTCGGGATGTC
GAGCGGGACGTCGACGTTCAAGGTGCTGAGCTTGAGCGCCGCTAGGCCCA
GCAAAGCAGCTTGCCCCGTGGGGACGTGGGTTTGCTGGCACGTGGCGATG
AGCTTCGCAACCGGCTCGATGAGGGAACACAGCTCTTCG
back to top