mRNA_E_fasciculatus_S2_contig9138.17209.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9138.17209.1
Unique NamemRNA_E_fasciculatus_S2_contig9138.17209.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9138.17209.1 vs.
Match: Spherulin (4 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G9D4_ECTSI)

HSP 1 Score: 268 bits (686), Expect = 5.900e-86
Identity = 135/137 (98.54%), Postives = 137/137 (100.00%), Query Frame = 1 
Query:    1 DTEAIMATADPGDYGDRIMVAMNVEITETGESTDRAAAVRDAGAKVLCYIEADKYGNNLATLEEVVETFTFFPLNEICGGFFFGAFNILLAIEDMPGMQSLYLKTQKTFLQPTVVFAPEVQDYSDGFESSYSFSYDF 411
            DTEAIMATADPGDYGDRIMVAMNVEITETGESTDRAAAVRDAGAKVLCYIEADKYGN+LATLEEVVET+TFFPLNEICGGFFFGAFNILLAIEDMPGMQSLYLKTQKTFLQPTVVFAPEVQDYSDGFESSYSFSYDF
Sbjct:  259 DTEAIMATADPGDYGDRIMVAMNVEITETGESTDRAAAVRDAGAKVLCYIEADKYGNDLATLEEVVETYTFFPLNEICGGFFFGAFNILLAIEDMPGMQSLYLKTQKTFLQPTVVFAPEVQDYSDGFESSYSFSYDF 395
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9138.17209.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Spherulin5.900e-8698.544 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G9D4_ECTSI[more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9138contigE_fasciculatus_S2_contig9138:1551..3574 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size413
Hectar predicted targeting categoryother localisation
Exons3
Cds size396
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842565.4802282-CDS-E_fasciculatus_S2_contig9138:1550..16431696842565.4802282-CDS-E_fasciculatus_S2_contig9138:1550..1643Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9138 1551..1643 -
1696842565.4933052-CDS-E_fasciculatus_S2_contig9138:2365..25481696842565.4933052-CDS-E_fasciculatus_S2_contig9138:2365..2548Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9138 2366..2548 -
1696842565.5028925-CDS-E_fasciculatus_S2_contig9138:3439..35591696842565.5028925-CDS-E_fasciculatus_S2_contig9138:3439..3559Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9138 3440..3559 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842565.5138674-UTR-E_fasciculatus_S2_contig9138:3559..35741696842565.5138674-UTR-E_fasciculatus_S2_contig9138:3559..3574Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9138 3560..3574 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9138.17209.1prot_E_fasciculatus_S2_contig9138.17209.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9138 1551..3559 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9138.17209.1

>prot_E_fasciculatus_S2_contig9138.17209.1 ID=prot_E_fasciculatus_S2_contig9138.17209.1|Name=mRNA_E_fasciculatus_S2_contig9138.17209.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=132bp
MATADPGDYGDRIMVAMNVEITETGESTDRAAAVRDAGAKVLCYIEADKY
GNNLATLEEVVETFTFFPLNEICGGFFFGAFNILLAIEDMPGMQSLYLKT
QKTFLQPTVVFAPEVQDYSDGFESSYSFSYDF
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mRNA from alignment at E_fasciculatus_S2_contig9138:1551..3574-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9138.17209.1 ID=mRNA_E_fasciculatus_S2_contig9138.17209.1|Name=mRNA_E_fasciculatus_S2_contig9138.17209.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2024bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9138:1551..3574- (Ectocarpus fasciculatus EfasUO2)
GACACGGAGGCCATCATGGCCACCGCCGACCCGGGAGACTACGGCGACAG
GATCATGGTCGCCATGAACGTCGAGATTACCGAGACCGGCGAGTCTACCG
ACAGGGCTGCCGCCGTCAGGGACGCAGGGGCCAAGGTAAAGAGTTATATA
TATATTTTTTTTTATTGCTCAAAATCAGATGTTTGTTTATTTATTTATTC
ATTCATTTTTATGGCTTTACATCAGCGCTCACGGCTTTTCTGGCGGGTAG
GAGCTCCAACCTGTCGTTACAAGAAAAAGCAAAACGAAACAGTGAAAGAA
GTAGACCGTTTTGGGCACAAATCAACCGAAATCTTGCAGGGTGGCAACGT
CACAGCTCTGTGGGATGCTTGCCCCATCCCGCGTCGTCGTTTTCGATTTC
CGTCAAGCTTATTGTCGATTGATGACATGAATTAGCTCCTTTTGTGTGTT
GTGCTCTAGTGCACTGGGGTCCGGCTTGAAGGTTTGGAGCCCGGCTCGTA
CAGTAGTCGCTCTATTGTAGTCTACACCAGCCGTATGCTGCATGTGACCG
CCTTCGTCGGTTGGCTTGAGTTTCGCGTGTGTTTGTCTTGAACCAGAACA
TCTTGAAGTGTAGTTTGATTCAACTGGATGGCGTTGTTCTATTTCGTCGT
GCTTCTTGTTGGTCGGAGGAACAAAACGATCGTGTGTCACGTGCAGTTGT
TTGTTCACTCATGCTCCGATATTTTTTCTTGTACCGCTTCCAGTTGCCAC
ATTGACCCAACCCCGCTGTGTTCGAGCCTGGTCCGGTGAGAACCCGGCGT
GCTCCGTCCCGGCTTTGTAGGGATGCGAGGTCAATGATCTAATGACTACG
GCATGCACGACTATGAGTACCCCCCCGTCCCGCTGTGTTCCTCGGCTCGA
ACGGAACACGTAACACGCACACAAAGCTGAGTTAAGTCCCTCTTCGGCCG
GCCGGATCGTTGCCCATGCTGTCTGTCGCCTGCGCCCCCCCCTTCTTCCT
CGTGTGTCGCCTTCTTGCCCCATAAGGTGCTCTGCTACATCGAGGCTGAC
AAGTACGGCAACAACCTGGCCACCCTCGAGGAGGTCGTGGAGACGTTCAC
CTTCTTCCCCCTCAACGAGATCTGCGGCGGTTTCTTCTTCGGGGCCTTCA
ACATCCTGCTGGCCATCGAGGACATGCCCGGCATGCAGTCCCTCTACCTC
AAGACCCAGGTGAACGGGCGTGGGGGGGGGGGGGGGGGCGGNNNNNNNNN
NACGGGCGTCGGCGTGTTTTTCTTTGTGGGGCCTTTCCACCCCCCCGGGG
CCACGGGCGCCTGCGCGGGCCGGCGGCCCCCCTCCCAGAGGACCGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGCACGTAGATGGATGTGTTGCGC
GGGGGGAAAGCGATCGCGTTTCTAAGCCATGGAACACGAAGATGACAAGA
CAAAATAGAGGGTTGGCCCTTTGGAAGATGACCTGTATAGGCATCCATGT
GTATGTCATCTTCGATAGTTTGTAAGAGATGGAAAGCCGCGGGATGAAGG
GATGGATTTAAACTCCTCCCCAATTTCATCAACAGCATCACTTTTTCACG
TCCAGCAACCGAAATCTGTTGCGTGGAAGGTGTGGAGATCAAGCCCGATC
AGTTGGGTCCTCTAACGTATGTTCAGCGAAGGCATGGTGTCCCGTCACGT
AAGGGATTGGTGGTCAATGTAAGGTCAAATGCCTCAAGGCGAGCGGCTTC
CTTTTCTTTGCTGCTCCTGCCGATTTTGTTCTCTGTAGACCATTCCTCGT
CTGTGCTCCCGGCTTTGTGCCAGTGCAGACCATTCGTCGTTCCATCAAGC
TCAGCTGTTCCCCACCGTCTCGTCAATAACCATACGATCCGTCCCTCCGG
TGCTCGCAACACGACCGTCTTTTCGGAGCAGAAAACCTTCCTCCAGCCGA
CGGTGGTGTTTGCACCCGAGGTCCAGGACTACTCGGACGGCTTCGAATCG
AGCTACAGCTTCAGCTACGACTTC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9138:1551..3574-

>mRNA_E_fasciculatus_S2_contig9138.17209.1 ID=mRNA_E_fasciculatus_S2_contig9138.17209.1|Name=mRNA_E_fasciculatus_S2_contig9138.17209.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=396bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9138:1551..3574- (Ectocarpus fasciculatus EfasUO2)
ATGGCCACCGCCGACCCGGGAGACTACGGCGACAGGATCATGGTCGCCAT
GAACGTCGAGATTACCGAGACCGGCGAGTCTACCGACAGGGCTGCCGCCG
TCAGGGACGCAGGGGCCAAGGTGCTCTGCTACATCGAGGCTGACAAGTAC
GGCAACAACCTGGCCACCCTCGAGGAGGTCGTGGAGACGTTCACCTTCTT
CCCCCTCAACGAGATCTGCGGCGGTTTCTTCTTCGGGGCCTTCAACATCC
TGCTGGCCATCGAGGACATGCCCGGCATGCAGTCCCTCTACCTCAAGACC
CAGAAAACCTTCCTCCAGCCGACGGTGGTGTTTGCACCCGAGGTCCAGGA
CTACTCGGACGGCTTCGAATCGAGCTACAGCTTCAGCTACGACTTC
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