mRNA_E_fasciculatus_S2_contig9136.17208.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9136.17208.1
Unique NamemRNA_E_fasciculatus_S2_contig9136.17208.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9136.17208.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXI9_ECTSI)

HSP 1 Score: 171 bits (433), Expect = 1.610e-44
Identity = 162/245 (66.12%), Postives = 169/245 (68.98%), Query Frame = 1 
Query:    1 QDPPAMLGYCTRRLCCAVAALPEPXXXXXXXXXXXXXXXXQLCSLARGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEPPA--------TAASPTSTATVGVTPVSVSATWAPQDRPSLLLRASVAGGRESGTSNGSGAEEGWRAGETEGGANAXXXXXXXXXXXXXXXXXXXXAERQPAAADCGDESGTGGRAGTSGDCGKDDLDGNGSSLRSRMGPALTSEAAGLSELIR 711
            +DPPAMLGYCTRRLCC V+ALPEP                QLCSLA+G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX             TAASPTSTATVGVTPVSVSATWAPQDRPSLL+RA+  G  ESG S+G   E GWRAGET+GGA A                       QPAA D GDE G GGRAGTSGDC K DLD N     SRMGPALTSEAAGLSELIR
Sbjct:  451 EDPPAMLGYCTRRLCCVVSALPEPSSSSASRAVAARS---QLCSLAKGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAASPTSTATVGVTPVSVSATWAPQDRPSLLVRATAVGAGESGESDGR-EEGGWRAGETDGGATAAAAAATPARGVAA-------TAEQPAAVDGGDEDGPGGRAGTSGDCAKGDLDSNPGLRSSRMGPALTSEAAGLSELIR 684
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9136.17208.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLQ0_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 3.420e-31
Identity = 77/87 (88.51%), Postives = 78/87 (89.66%), Query Frame = 1 
Query:  547 QPAAADCGDESGTGGRAGTSGDCGKDDLDGNGSSLRSRMGPALTSEAAGLSELIRRRGGLSALSDGRAVAAVLRAAAPRRQNAFHLQ 807
            QPAA D GDE   GGRAGTSGDC K+DLDGN   LRSRMGPALTSEAAGLSELIRRRGGLSALSDGRAVAAVLRAAAPRRQNAFHLQ
Sbjct:  548 QPAAVDGGDEVSPGGRAGTSGDCAKEDLDGN-PDLRSRMGPALTSEAAGLSELIRRRGGLSALSDGRAVAAVLRAAAPRRQNAFHLQ 633
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9136.17208.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.610e-4466.12protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.420e-3188.51protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9136contigE_fasciculatus_S2_contig9136:86..925 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size841
Hectar predicted targeting categorymitochondrion
Exons1
Ec32 ortholog descriptionGAF domain-like
Ec32 orthologEc-28_001830.1
Cds size825
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842565.4393573-UTR-E_fasciculatus_S2_contig9136:85..1001696842565.4393573-UTR-E_fasciculatus_S2_contig9136:85..100Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9136 86..100 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842565.4497406-CDS-E_fasciculatus_S2_contig9136:100..9251696842565.4497406-CDS-E_fasciculatus_S2_contig9136:100..925Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9136 101..925 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9136.17208.1prot_E_fasciculatus_S2_contig9136.17208.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9136 101..925 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9136.17208.1

>prot_E_fasciculatus_S2_contig9136.17208.1 ID=prot_E_fasciculatus_S2_contig9136.17208.1|Name=mRNA_E_fasciculatus_S2_contig9136.17208.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=275bp
MLGYCTRRLCCAVAALPEPSSSSASRATAAVAARAQLCSLARGGTAASGG
GGGGSSTGSTRSSLASSATLAAAATVAAAAAVLTPEPPATAASPTSTATV
GVTPVSVSATWAPQDRPSLLLRASVAGGRESGTSNGSGAEEGWRAGETEG
GANAAAAAAAAAASTVGGAAAAATAERQPAAADCGDESGTGGRAGTSGDC
GKDDLDGNGSSLRSRMGPALTSEAAGLSELIRRRGGLSALSDGRAVAAVL
RAAAPRRQNAFHLQHPPQQQQQQQQ
back to top

mRNA from alignment at E_fasciculatus_S2_contig9136:86..925+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9136.17208.1 ID=mRNA_E_fasciculatus_S2_contig9136.17208.1|Name=mRNA_E_fasciculatus_S2_contig9136.17208.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=840bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9136:86..925+ (Ectocarpus fasciculatus EfasUO2)
CAGGACCCGCCGGCAATGCTCGGGTACTGCACCCGGCGTCTCTGCTGCGC
GGTCGCCGCGCTCCCAGAGCCCTCTTCCTCCTCCGCCTCCCGGGCCACCG
CCGCGGTCGCCGCTCGGGCCCAGCTGTGCTCGCTTGCCAGGGGGGGGACC
GCCGCTAGCGGCGGGGGCGGGGGGGGCTCCTCCACCGGCTCGACCAGGTC
GTCGTTAGCCTCGTCCGCCACTCTTGCCGCTGCTGCTACGGTAGCGGCGG
CAGCGGCGGTGCTGACCCCCGAGCCGCCGGCTACGGCCGCCTCGCCGACC
TCCACGGCGACGGTGGGGGTGACACCCGTGTCGGTGTCGGCCACGTGGGC
GCCGCAAGACCGGCCGTCGTTGTTGCTCAGAGCGTCGGTAGCGGGTGGGC
GTGAATCCGGCACGAGCAATGGCAGTGGCGCAGAGGAAGGGTGGCGGGCG
GGCGAGACAGAGGGGGGTGCTAATGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCATCAACCGTGGGGGGGGCAGCAGCGGCGGCCACTGCCGAGCGGCAGC
CCGCGGCAGCCGACTGCGGCGACGAGAGCGGCACCGGCGGCAGGGCAGGC
ACGAGCGGCGACTGCGGCAAGGACGACCTCGACGGCAACGGTAGCAGCCT
CCGGAGCCGCATGGGACCGGCGCTCACGAGCGAGGCCGCCGGGCTCAGCG
AGCTCATCCGCCGGCGGGGGGGGCTGTCCGCCCTGTCCGACGGCCGGGCC
GTAGCCGCCGTCCTCCGAGCCGCGGCTCCCCGGCGCCAGAACGCCTTCCA
CCTCCAGCACCCGCCGCAGCAGCAGCAGCAGCAGCAGCAG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9136:86..925+

>mRNA_E_fasciculatus_S2_contig9136.17208.1 ID=mRNA_E_fasciculatus_S2_contig9136.17208.1|Name=mRNA_E_fasciculatus_S2_contig9136.17208.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=825bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9136:86..925+ (Ectocarpus fasciculatus EfasUO2)
ATGCTCGGGTACTGCACCCGGCGTCTCTGCTGCGCGGTCGCCGCGCTCCC
AGAGCCCTCTTCCTCCTCCGCCTCCCGGGCCACCGCCGCGGTCGCCGCTC
GGGCCCAGCTGTGCTCGCTTGCCAGGGGGGGGACCGCCGCTAGCGGCGGG
GGCGGGGGGGGCTCCTCCACCGGCTCGACCAGGTCGTCGTTAGCCTCGTC
CGCCACTCTTGCCGCTGCTGCTACGGTAGCGGCGGCAGCGGCGGTGCTGA
CCCCCGAGCCGCCGGCTACGGCCGCCTCGCCGACCTCCACGGCGACGGTG
GGGGTGACACCCGTGTCGGTGTCGGCCACGTGGGCGCCGCAAGACCGGCC
GTCGTTGTTGCTCAGAGCGTCGGTAGCGGGTGGGCGTGAATCCGGCACGA
GCAATGGCAGTGGCGCAGAGGAAGGGTGGCGGGCGGGCGAGACAGAGGGG
GGTGCTAATGCAGCAGCAGCAGCAGCAGCAGCAGCAGCATCAACCGTGGG
GGGGGCAGCAGCGGCGGCCACTGCCGAGCGGCAGCCCGCGGCAGCCGACT
GCGGCGACGAGAGCGGCACCGGCGGCAGGGCAGGCACGAGCGGCGACTGC
GGCAAGGACGACCTCGACGGCAACGGTAGCAGCCTCCGGAGCCGCATGGG
ACCGGCGCTCACGAGCGAGGCCGCCGGGCTCAGCGAGCTCATCCGCCGGC
GGGGGGGGCTGTCCGCCCTGTCCGACGGCCGGGCCGTAGCCGCCGTCCTC
CGAGCCGCGGCTCCCCGGCGCCAGAACGCCTTCCACCTCCAGCACCCGCC
GCAGCAGCAGCAGCAGCAGCAGCAG
back to top