mRNA_E_fasciculatus_S2_contig9134.17207.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9134.17207.1
Unique NamemRNA_E_fasciculatus_S2_contig9134.17207.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9134.17207.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K822_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 9.520e-38
Identity = 80/86 (93.02%), Postives = 81/86 (94.19%), Query Frame = 1 
Query:    1 GDEDDGFDEEDGVDRGDLVQEYTQSLKGRLVLSGGASVAGAALGAMISKSTIQRTPVMSLVGLLVGLVLSVARGAFGDLFRALGLA 258
            GDEDDGFDEEDGV R DLVQEY QS KGRLVLSGGASVAGAALG +ISKSTIQRTPVMSLVGLLVGLVLSVARGAFGDLFRALGLA
Sbjct:  174 GDEDDGFDEEDGVVREDLVQEYAQSFKGRLVLSGGASVAGAALGVIISKSTIQRTPVMSLVGLLVGLVLSVARGAFGDLFRALGLA 259
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BLAST of mRNA_E_fasciculatus_S2_contig9134.17207.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6C8_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.450e-14
Identity = 38/69 (55.07%), Postives = 54/69 (78.26%), Query Frame = 1 
Query:   49 DLVQEYTQSLKGRLVLSGGASVAGAALGAMISKSTIQRTPVMSLVGLLVGLVLSVARGAFGDLFRALGL 255
            D+V  Y+QS KG+ +++ G+ + GA +G  IS+ST+ +TP M+L GL +GL+LS+ARGAFGDL RALGL
Sbjct:  136 DMVVVYSQSAKGKAIVTVGSGLVGAVIGVAISESTVHKTPSMALAGLFLGLMLSIARGAFGDLLRALGL 204
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BLAST of mRNA_E_fasciculatus_S2_contig9134.17207.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMQ8_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 2.150e-14
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 1 
Query:  136 MISKSTIQRTPVMSLVGLLVGLVLSVARGAFGDLFRALGLA 258
            MISKSTIQRTPVMSLVGLLVGLVLSVARGAFGDLFRALGLA
Sbjct:    1 MISKSTIQRTPVMSLVGLLVGLVLSVARGAFGDLFRALGLA 41
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9134.17207.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized9.520e-3893.02protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.450e-1455.07protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Uncharacterized2.150e-14100.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9134contigE_fasciculatus_S2_contig9134:2699..3955 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score75.5
Seed ortholog evalue1.4e-11
Seed eggNOG ortholog2880.D8LMQ8
Model size260
Hectar predicted targeting categoryother localisation
Exons3
EggNOG OGs2E303@1,2SA5N@2759
Cds size258
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842565.3894942-CDS-E_fasciculatus_S2_contig9134:2698..28091696842565.3894942-CDS-E_fasciculatus_S2_contig9134:2698..2809Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9134 2699..2809 -
1696842565.399758-CDS-E_fasciculatus_S2_contig9134:3192..33121696842565.399758-CDS-E_fasciculatus_S2_contig9134:3192..3312Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9134 3193..3312 -
1696842565.4083266-CDS-E_fasciculatus_S2_contig9134:3928..39551696842565.4083266-CDS-E_fasciculatus_S2_contig9134:3928..3955Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9134 3929..3955 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9134.17207.1prot_E_fasciculatus_S2_contig9134.17207.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9134 2699..3955 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9134.17207.1

>prot_E_fasciculatus_S2_contig9134.17207.1 ID=prot_E_fasciculatus_S2_contig9134.17207.1|Name=mRNA_E_fasciculatus_S2_contig9134.17207.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=86bp
GDEDDGFDEEDGVDRGDLVQEYTQSLKGRLVLSGGASVAGAALGAMISKS
TIQRTPVMSLVGLLVGLVLSVARGAFGDLFRALGLA
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mRNA from alignment at E_fasciculatus_S2_contig9134:2699..3955-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9134.17207.1 ID=mRNA_E_fasciculatus_S2_contig9134.17207.1|Name=mRNA_E_fasciculatus_S2_contig9134.17207.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1257bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9134:2699..3955- (Ectocarpus fasciculatus EfasUO2)
GGGGACGAGGACGATGGGTTTGATGAGGTGCGGAGAGAGGGGGGGGCGGG
TAGGCGTAGGTGGATGTGTGTACTTCGAATTCACAGCAGTAGCCAGCTGT
GTTGGTGGAAATATGGGTGTGTGTCTGGCTCGTTGTGTACACGCATGCTG
CCTGAAATGTGTGGTTTTTAGCTGGCACCCTGGGAGGGGGCGATTTTCGA
GAAGAGGGCTTTACTTTGGAAATTAACCGTTTTTATGTTTGTTTGTCGTT
ACCTCTCAACTTTCTGTTAATCTAGTCCTTCAGCCTCACGATGAAGTTGC
GCTTAAAAAGAGAGGCACACGTCATACTATCGAGACGTCTCAAGCGACTC
TATTGCCGGTCCAGCAGTATGTACGCATACGCAATATTCGGTACGCTAGA
GGTCATTCTGTCTCTCAGCGCGCGTCTTTTTTCCGTCGGGTTTTGCCGCA
CGCACATGCACCTACCGATCTTCGACGGTCTCCCCGCCCCTCCCCCCCGC
CAAGAAAGCGAGCAACCCCCCGCCGCGTCTTGAAAAGACCAACCGCACGA
TTGTTTTCCCCATTCCCTTTGGTGACATCGCCTTCTTCTTTCTCGTGTCC
CTCTTCCTTCCTTGCTTCCTTGCTTGTTTGCTGTGCACAGCAGGAGGATG
GGGTTGATAGGGGTGACCTCGTGCAGGAGTACACGCAGTCCCTCAAGGGA
AGGCTCGTGCTGTCCGGGGGAGCTTCCGTCGCCGGCGCAGCGCTCGGAGC
TATGATCAGCAAGGTGGGAGGGGGGGGGGGTACTCATAGTCGTGGTTGCC
GTAGTCGTTTTCGACCATTGACTTCGCATCCCTTCAAAGCCGGGACGGGG
CACGTCGGGTTCTCAACGGGGCTTTCATTGTTGTGAGCACGAGCCTCGCC
CTCCCATGCACGCACACTGTACTTGTACCTTCCGCTGATGTTGAACGGTG
CATGTACTTGTACTCAGGAGTAGCCTTTCCTTTCTTGGTAACCTCACTCC
ACTATACTGCTGCTGCTAAATGCAGCTGATTTCGGCACCGGGTATTGATG
GCATGATGGAGAGCACGTCGCCTTGCAGTGCTGCGACTTTAACGAACAAC
TTCTTCTTTTATACGGTTTCTCGACCCCCCCCCCCCCCGAAAACAGTCGA
CGATTCAGCGTACCCCCGTGATGTCCCTGGTGGGCCTCCTCGTGGGCCTC
GTTCTCAGCGTGGCCAGGGGGGCCTTCGGCGACCTCTTCCGCGCCCTGGG
CCTCGCC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9134:2699..3955-

>mRNA_E_fasciculatus_S2_contig9134.17207.1 ID=mRNA_E_fasciculatus_S2_contig9134.17207.1|Name=mRNA_E_fasciculatus_S2_contig9134.17207.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=258bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9134:2699..3955- (Ectocarpus fasciculatus EfasUO2)
GGGGACGAGGACGATGGGTTTGATGAGGAGGATGGGGTTGATAGGGGTGA
CCTCGTGCAGGAGTACACGCAGTCCCTCAAGGGAAGGCTCGTGCTGTCCG
GGGGAGCTTCCGTCGCCGGCGCAGCGCTCGGAGCTATGATCAGCAAGTCG
ACGATTCAGCGTACCCCCGTGATGTCCCTGGTGGGCCTCCTCGTGGGCCT
CGTTCTCAGCGTGGCCAGGGGGGCCTTCGGCGACCTCTTCCGCGCCCTGG
GCCTCGCC
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