mRNA_E_fasciculatus_S2_contig913.17203.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig913.17203.1
Unique NamemRNA_E_fasciculatus_S2_contig913.17203.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig913.17203.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYC0_9PHAE)

HSP 1 Score: 296 bits (759), Expect = 4.340e-94
Identity = 216/271 (79.70%), Postives = 222/271 (81.92%), Query Frame = 3 
Query:  216 MGNTSASQKDSSANAPRAAKDLDDLLPALRERFEELE------------------TEEEERFV----------------LFDDWRYLPGPRGAEVAKRLYGVLDTNGDGRLSFEEFAGAACLLKGSPHQTKLELLFKMYGDASRGGLVGREGLKALILDVIAASPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDFEKELGGILAKMAEVVLTEYDSDNDGLLTEKEWRAYLKQEEDSVIAFLDTLSDSVGNLLLPP 926
            MGNTSASQKDSS NAPRAAKDLDDLLPALRERFE+L                   T   E  V                      YLPGPRGAEVAKRLYGVLD NGDGRLSFEEFA AACLLKGSPHQTKLELLF+MYGDASRGGLVGREGLKALILDVIAASPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDFEKELGGILAKMA+VVLTE+D+DNDGLLTEKEW+AYLKQEEDSVIAFLDTLSDSVGNLLLPP
Sbjct:    1 MGNTSASQKDSSVNAPRAAKDLDDLLPALRERFEDLAGIPASEAPQQPPRGAAVATTASECHVRQXXXXXXXXXXXXXXXXXXXXYLPGPRGAEVAKRLYGVLDANGDGRLSFEEFASAACLLKGSPHQTKLELLFRMYGDASRGGLVGREGLKALILDVIAASPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDFEKELGGILAKMADVVLTEHDADNDGLLTEKEWKAYLKQEEDSVIAFLDTLSDSVGNLLLPP 271
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BLAST of mRNA_E_fasciculatus_S2_contig913.17203.1 vs.
Match: EF-hand (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPE9_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 1.100e-37
Identity = 91/153 (59.48%), Postives = 94/153 (61.44%), Query Frame = 3 
Query:  216 MGNTSASQKDSSANAPRAAKDLDDLLPALRERFEELE------------------TEEEERFV-------------------LFDDWRYLPGPRGAEVAKRLYGVLDTNGDGRLSFEEFAGAACLLKGSPHQTKLELLFKMYGDASRGGLVGR 563
            MGNTSASQKDSSANAPRAAKDLDDLLPALRERFEEL                   T   E  V                       W YLPGPRGAEVAKRLYGVLD NGDGRLSFEEFAGAACLLKGSPHQTKLE   +   +A  G  VG+
Sbjct:    1 MGNTSASQKDSSANAPRAAKDLDDLLPALRERFEELAGLPASEAPLPPPRGAAVATTASEGHVRXXXXXXXXXXXXXXXXXXXXXXWWYLPGPRGAEVAKRLYGVLDANGDGRLSFEEFAGAACLLKGSPHQTKLERCTETLAEA--GSSVGK 151
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig913.17203.1 vs.
Match: EF-hand (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF0_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 3.160e-22
Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 3 
Query:  774 MAEVVLTEYDSDNDGLLTEKEWRAYLKQEEDSVIAFLDTLSDSVGNLLLPP 926
            MA+VVLTEYD+DNDGLLTEKEWRAYLKQEEDSVIAFLDTLSDSVGNLLLPP
Sbjct:    1 MADVVLTEYDADNDGLLTEKEWRAYLKQEEDSVIAFLDTLSDSVGNLLLPP 51
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig913.17203.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized4.340e-9479.70protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
EF-hand1.100e-3759.48domain-containing protein n=1 Tax=Ectocarpus silic... [more]
EF-hand3.160e-2296.08domain-containing protein n=1 Tax=Ectocarpus silic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig913contigE_fasciculatus_S2_contig913:18704..23491 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1601
Hectar predicted targeting categoryother localisation
Exons7
Cds size714
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig913.17203.1prot_E_fasciculatus_S2_contig913.17203.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig913 19797..22819 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842564.9811618-UTR-E_fasciculatus_S2_contig913:18703..188731696842564.9811618-UTR-E_fasciculatus_S2_contig913:18703..18873Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig913 18704..18873 +
1696842564.992608-UTR-E_fasciculatus_S2_contig913:19751..197961696842564.992608-UTR-E_fasciculatus_S2_contig913:19751..19796Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig913 19752..19796 +
1696842565.0827405-UTR-E_fasciculatus_S2_contig913:22819..234911696842565.0827405-UTR-E_fasciculatus_S2_contig913:22819..23491Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig913 22820..23491 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842565.002725-CDS-E_fasciculatus_S2_contig913:19796..199041696842565.002725-CDS-E_fasciculatus_S2_contig913:19796..19904Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig913 19797..19904 +
1696842565.0128355-CDS-E_fasciculatus_S2_contig913:20039..201711696842565.0128355-CDS-E_fasciculatus_S2_contig913:20039..20171Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig913 20040..20171 +
1696842565.028815-CDS-E_fasciculatus_S2_contig913:20863..209211696842565.028815-CDS-E_fasciculatus_S2_contig913:20863..20921Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig913 20864..20921 +
1696842565.0495346-CDS-E_fasciculatus_S2_contig913:21316..216001696842565.0495346-CDS-E_fasciculatus_S2_contig913:21316..21600Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig913 21317..21600 +
1696842565.0598085-CDS-E_fasciculatus_S2_contig913:22393..224501696842565.0598085-CDS-E_fasciculatus_S2_contig913:22393..22450Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig913 22394..22450 +
1696842565.071428-CDS-E_fasciculatus_S2_contig913:22744..228191696842565.071428-CDS-E_fasciculatus_S2_contig913:22744..22819Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig913 22745..22819 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig913.17203.1

>prot_E_fasciculatus_S2_contig913.17203.1 ID=prot_E_fasciculatus_S2_contig913.17203.1|Name=mRNA_E_fasciculatus_S2_contig913.17203.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=238bp
MGNTSASQKDSSANAPRAAKDLDDLLPALRERFEELETEEEERFVLFDDW
RYLPGPRGAEVAKRLYGVLDTNGDGRLSFEEFAGAACLLKGSPHQTKLEL
LFKMYGDASRGGLVGREGLKALILDVIAASPPLLTPPSLAVTGGGGGGGT
SESPRSSSAWALQPHQQQEQQQQPDFEKELGGILAKMAEVVLTEYDSDND
GLLTEKEWRAYLKQEEDSVIAFLDTLSDSVGNLLLPP*
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mRNA from alignment at E_fasciculatus_S2_contig913:18704..23491+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig913.17203.1 ID=mRNA_E_fasciculatus_S2_contig913.17203.1|Name=mRNA_E_fasciculatus_S2_contig913.17203.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4788bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig913:18704..23491+ (Ectocarpus fasciculatus EfasUO2)
CAGCGTTGTGCATTGCCACACCCCAGTCACCATCCCCTGGAAAGAAGATC
CCGACGACTTAACGTGAACCCCGGCTACTCCCCACAGCAACGACAGCGGT
ATTAGCGCAGCCGCAACAGCAGCAGCAAAGTCAATGTGTCACCACACCTC
CTGCTGACAACTTCAACGAGGCGAGCAGAGTGTGTGCCCTGTGCGACATG
AGTTTTGCGAGCGCCAGAGTCACCGAGGTGGCGTGGGTTAGACATGTTGA
CGTCCACACCCTATTTCTACGTACGATCAAGACGATAGATGAAGAAGAAC
AAGAGCTACTGTATTTCATTACTCTATTTCGAACGATCGACACAATAGTA
ATAGTTTCTGCTATCCTGCCGAGGCGTCCGTGGTACGCACCAGTCTGCGG
AGAGAACTTCACTGATCCTTCCGTAAACGGGCTCAAAATGAGCCCAGTAT
CAGCAGGTTTCTTTCCCCGTTCACTGCTGTAAAGACTTCAACACATCCCT
CTGACTGGGGCTTTTGTCTCGAACGGGTCGCAGTCTTCAGCCATGAGTTA
TGTTGTATATACATGCTTAGGTTGATTTAGGTATCAAGTATTGACCACAA
GGGAATCAGGAATGAACGAACAAGGTGAAAAGGATCTGGTTCTTTAAAAT
ATCCTTATATGTAGCAAGTCGTCCGAACACATATCGTCTGCTGTTCCTGT
TTCGATCGGGGAAGATATGCTACACTGTTGTACACGCGAGACGAGGCCCG
TCGATAAATAGTGGTGGAAGTGAAGTCATTACTGTACGGGGTGTCACGTT
TGTTTGTTTTTTTAACTGCGCACAAGATGTGGCGTTCGTTGACGCCCACG
TCGTGCTAGACAGGAAAAAAACACAAATCAAGATCGTTACAAAGTTGAGA
TGGTTGTGCTTTAAAAGGGCGAATGTGCCGTAAGAACGAGAGATGCGGTG
TTGCGCTGGTCCTTGCAAATACTCTCCCCTATGCTGGTGCAGGTCAGGAC
ATAATAAATACATTTTGCGCCATCCGTCGTCTACTACAATCCCTGCAGGG
CAACCACGACGACAAACAGCAGCAGGGCCGTATAAAGGCCCCCATGGGTA
ACACCTCGGCGTCCCAGAAGGACAGCTCTGCTAACGCGCCGCGGGCGGCA
AAAGACCTCGACGACCTACTCCCTGCCTTGCGCGAGAGGTTCGAGGAACT
CGCGGGGCTCCCGGCATCGGAAGCACCACCACGAGGTGCAGCGGTCGCAA
TACCCCCGGAGGGACACGTCCGGCAACAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGACGGAAGAGGA
GGAGCGGTTCGTCTTATTCGACGACTGGCGGTATTTGCCGGGGCCGAGGG
GTGCGGAGGTGGCGAAGAGGCTGTACGGCGTGCTGGACACCAACGGGGAC
GGCAGGTTAAGCTTCGAGGTACTGCTGTGTTGTTGTGCTACTGCCGTCGC
GCCTTGCTGTTGCCGTAGCACTGACTGCATGCGATCGCGGGAAATAGGAA
GGCGGTACATGACACGGAAGGGGTAGCGAGTAGAGAGAGAGAGAGAGAGA
GAGAGAGACAGACAGACAGACGACAGAGACAGAAACAGAGACAGACAGAG
AAAGACGGACCAGAGGCGGAGACAGGCGGCGTGGTACGTTTGGCACGTGC
ATGTCAACCGCGGAAACATCAACGGATGATTCAGGCAGAACGATTGGTAA
GCGTTCGTCGCACGAACGCAAGGTCGCGGTCGGGGTAGAAGAACATGGAT
CAATCACCCTGCCGTGTGAAACAAAGCGATGGATTCGCAGTTCCCACGCC
AGCGGTGAGTGGCAGGAAGCTGAAGAAGCACGTGTTGACAGCGCACACAA
AGAGGTGTAGCCGCATGAGGTATGTAGACCTTGTCTACTTTATGATGGTG
GAGAGATCCCTTGGCATGCGGTGCCCATAGAGAATTGCTTGAAAGACTAG
ACCCCACCGCCCACTGACAGTTAACTCCGCCCCGCCCCTCTCTTCTGGCT
CCCTTCCTGTTTGTATCGCCCGTCTGCGTACCAACGAATTCACCGTGTCC
TGTACCCGCTGTTAACTAACTTGCATGCCGAACTGCTGGTGCTAAACCGC
CCATCCACAGGAGTTCGCCGGTGCAGCATGTCTTCTCAAGGGCTCGCCGC
ACCAGACCAAGCTCGAACGTAAGCTGCTTGAGTGAGGAGGCATGTTCTTG
CTACGGCCACGGGCTGATCTGATTTCACTGCATGCTGTTGTTTTCGTCGA
AGCGGTCGAGTCGATTGGCTGTCTCAGTGTTTAGAGCGAGTCCCTCGCAC
TTAGGAACCAAGGAAGCGCGCGATTTCAGCTTGCGAGGGGTATCTATGGT
CCAAGTTGAGACGAAATGTATGGGCAAGAATCCCCGTGCCACAAAGGGAA
GAATGAGAATGTGCAACCGCTTCGTGTGACGAATCGCAGACCTCGCACCC
CTCTCTCCCGTCCCACCGTTACCTCATCTCGGCGTTATGGTTCTTCCATG
GTTTTTGACGCGACGGGACGCTGACCAAAACGAATCCCGAAAACTGCTGT
GCACCGAAAAAAGTTCTCTTCAAGATGTACGGAGACGCTAGCAGAGGCGG
GCTCGTCGGGAGGGAAGGGCTGAAAGCCCTGATCCTCGATGTGATCGCTG
CGTCTCCGCCGTTACTCACGCCGCCGTCGCTTGCTGTCACCGGTGGCGGC
GGCGGCGGCGGCACCAGCGAGTCGCCGCGTTCGTCGTCTGCTTGGGCTCT
ACAACCGCACCAGCAGCAAGAGCAGCAGCAGCAACCGGACTTCGAGAAGG
AGCTGGGGGGCATCCTGGCCAAGATGGCTGAGGTCGTTCTCACCGAGGTG
ACAAGCACCTTTATCCCACACAGCGACTTTTTTTCCTTCGGTTGGGTCGT
TTGGTTTGTAGACCGGTCTGGTCTGGCGGCCGGGTATCCAGGCCGTTGAT
TGGTCGGGCAATTGGTTTCAGCATTTGGCGGCCTATTGAGGGCCTAAATG
ATGAGGCTGTGGTTGCAGCATCATAGTAGGATCCGTGTGTTCAAGGCAAT
TTGACGTAGCACTCCTTCAAAGCAGCTCAAGGGAGCATGGGTGGAGTGGT
TTGGATTTTCACATGGTTAGCATGATTGGATGGTGAAAAGAAACGTGTTG
AAGTAGAGAAAAAGATATGGGAGGAGAGAAAGAAACGCTACACCTGTCCG
CACTTTGATCATTGGGACGATATGTTTTTTGTTTGGATGCGTCAGAAATT
AGGCATCTTCCTACTATGAGGGGACGCTCATCGACACTGGTGCTACTGTA
TTTGCGGTAGGGAAGCTCACACGTTGACATAAGGCCTTCCCTTGATTAGC
ACGAGGTCTCGAATGACAGAAAGAAATAGTCGGCTTTCTGCCGAATCTTG
ACTACTTTGTGCAAGTTATTGTGACGTCATGCCTTCGAATAGAACCCTAA
GAAATGTTTTCTCGGAGTGGCCTAAGATGCAGCAGCCCGCAGCAGCGGAC
GGGCGGGCGAGTGACACATCTCAACCTCTACCAACTTGGACGTTGCGGAG
CCCCCCCCCCCTAACACCTTCCTCTGACTCTCTCGGCTTGTGTGATGTTG
TATCCTGTGCCCGTGCTGTTTGTGGCTGGGATGTTGGCAGTACGACTCCG
ACAACGACGGCCTGCTGACAGAGAAGGAATGGAGGGCCTACCTCAAGGTG
CGCTTGCTGCTTGCGATTACTTCACCCGAAGTAGTCCGTGGGCTGGGCTT
GGATTACCGGGTAGTAGACGGTTTCGGCGAGATGGGGCGCTGGGCGTTCT
GACATCCATGTAGCTAAATGTCGGCCGTGGGCAAGTTCGAAAGGTGGTCG
GTCATGTGCAAGCTCGAAAGGTGTTGCTCTACATATACATACGACACCAC
AACGCCCTATCCCACGCAATACATGAAACGCCATCACCTACCCCGCCGCC
CTGCGTACGTGTTCGTTTTTCGTTCGCTTGCGCCCCCACAGCAAGAGGAG
GACTCCGTGATCGCTTTCCTCGATACCCTCAGCGATAGCGTCGGGAACTT
GCTCCTGCCACCCTGACGACCCCATCTTGTTCGTGGGGGCAAGTTCTCCT
TGACAGTGCGATAGCTTAGAGAAAGGTGTCGCGTGTAGACAAAAAAGAGG
TGTGCCGTTTCTGTCCGTGGCCGACTGTCTGTGTGGATACAACGTTGCTG
TTGTCTGCACAATAGAATCCCGTCTGGCCTCCGTGCGGTGTGTCCTCTGT
CGCACTGGTCCCACGGGGAAACGTGTTGTGTTGCCATATGCGGAGGATTT
TGAACGATGCGGACGGCACTGACTCGGGATAGACTAGACCGTGTCGGGGC
CGCTTGTTGACTTTCGCTACTGCTGTGATGTGCCAGTTAGTGGTGTCTGT
CATGTCGACCGACCGGGGGAGAGGGCTGGTTTTGCGACAACCTCTCTCTC
TCCAACTTGCCAGAAGTTGATGCAGGCACCCCGAAGTGAGGTCCGACCTA
GAGAGGGTGTTGTTTGTGGTAGACTGCAGGAGTAGACTAGCGCATGGAAT
AGCCAAGCTTCGAGAGATGACAACAAATTCTTGCTAGAAGAGGAAGAGAG
CGTTATCACTTTGGATACGGGCAAGCACTGCTGTATTTAGCAGCACTTCA
AATCTCGGTGCGTACCGACATGGCCTGGCAGGCTCAAGTATGTAGAGGCG
AGGGATGGATCTGCACGAACAAGGCTTTTGGCTTGAGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig913:18704..23491+

>mRNA_E_fasciculatus_S2_contig913.17203.1 ID=mRNA_E_fasciculatus_S2_contig913.17203.1|Name=mRNA_E_fasciculatus_S2_contig913.17203.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=714bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig913:18704..23491+ (Ectocarpus fasciculatus EfasUO2)
ATGGGTAACACCTCGGCGTCCCAGAAGGACAGCTCTGCTAACGCGCCGCG
GGCGGCAAAAGACCTCGACGACCTACTCCCTGCCTTGCGCGAGAGGTTCG
AGGAACTCGAGACGGAAGAGGAGGAGCGGTTCGTCTTATTCGACGACTGG
CGGTATTTGCCGGGGCCGAGGGGTGCGGAGGTGGCGAAGAGGCTGTACGG
CGTGCTGGACACCAACGGGGACGGCAGGTTAAGCTTCGAGGAGTTCGCCG
GTGCAGCATGTCTTCTCAAGGGCTCGCCGCACCAGACCAAGCTCGAACTT
CTCTTCAAGATGTACGGAGACGCTAGCAGAGGCGGGCTCGTCGGGAGGGA
AGGGCTGAAAGCCCTGATCCTCGATGTGATCGCTGCGTCTCCGCCGTTAC
TCACGCCGCCGTCGCTTGCTGTCACCGGTGGCGGCGGCGGCGGCGGCACC
AGCGAGTCGCCGCGTTCGTCGTCTGCTTGGGCTCTACAACCGCACCAGCA
GCAAGAGCAGCAGCAGCAACCGGACTTCGAGAAGGAGCTGGGGGGCATCC
TGGCCAAGATGGCTGAGGTCGTTCTCACCGAGTACGACTCCGACAACGAC
GGCCTGCTGACAGAGAAGGAATGGAGGGCCTACCTCAAGCAAGAGGAGGA
CTCCGTGATCGCTTTCCTCGATACCCTCAGCGATAGCGTCGGGAACTTGC
TCCTGCCACCCTGA
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