mRNA_E_fasciculatus_S2_contig910.17179.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig910.17179.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTD9_ECTSI) HSP 1 Score: 239 bits (611), Expect = 1.540e-69 Identity = 156/302 (51.66%), Postives = 183/302 (60.60%), Query Frame = 1
Query: 1 ALSGDLVESLESLDACVDVVQRYPGIIRFRPHLIHCMLAAGHFFNRRDMYDAMRGVYNSVLPMGYSQAPPYEEWRSISQVCGNILCRSMEAQALQPRDEEVPLQSNAAADGLATSGLSSGLMES--SGTDTRNSGCPPA-----------PATATGATAMPSVLPETSHARQRVSQAGVGNDDAAADAAGDMRWQPGLEATAAMLVPESVFPDEASEAGGVGEDWSRPAGPEQHLRSEGGTAAAAAHTHTVEPVEEDVVLWGREMTLTDADLLDAATXXXXXXXXXXATVFARDEGLLGEGL 867
A++GDL ++ ESL ACVDVV RYPG++RFR HLIHCMLAA HFFNRRDMYDAMRGVYNSV PMGY Q PPYEEWR+I QVC ++LCRSMEA+ LQ DE P Q+ A++ TS S G ++S SG D+++SG PPA P TATGATA+ S LP+T H Q GND AA GDM Q GL ATA M +PESV+ + G WSR A +H RS A + E +VV G EM +TDADLLD A FA DEGLL E L
Sbjct: 306 AIAGDLDKAFESLQACVDVVLRYPGLVRFRSHLIHCMLAASHFFNRRDMYDAMRGVYNSVGPMGYPQIPPYEEWRTIRQVCPHVLCRSMEAEILQHLDEG-PGQTTNASEEPVTSEPSPGSIKSFRSGADSQSSGSPPAGLASEEQGSLAPTTATGATAVSSPLPDTPHTLATFVQDVDGNDGAAT---GDMPLQRGLVATA-MPIPESVYSAKGDTGGVRHAGWSRAAATGEHPRSSTAAPAPGSPKIGFEWWGGEVVSGGAEMNMTDADLLDIAA------------AFANDEGLLEEEL 590
BLAST of mRNA_E_fasciculatus_S2_contig910.17179.1 vs.
Match: Zn(2)-C6 (fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTE0_ECTSI) HSP 1 Score: 239 bits (611), Expect = 7.260e-68 Identity = 158/301 (52.49%), Postives = 185/301 (61.46%), Query Frame = 1
Query: 1 ALSGDLVESLESLDACVDVVQRYPGIIRFRPHLIHCMLAAGHFFNRRDMYDAMRGVYNSVLPMGYSQAPPYEEWRSISQVCGNILCRSMEAQALQPRDEEVPLQSNAAADGLATSGLSSGLMES--SGTDTRNSGCPP-----------APATATGATAMPSVLPETSHARQRVSQAGVGNDDAAADAAGDMRWQPGLEATAAMLVPESVFPDEASEAGGVGE-DWSRPAGPEQHLRSEGGTAAAAAHTHTVEPVEEDVVLWGREMTLTDADLLDAATXXXXXXXXXXATVFARDEGLLGE 861
A++GDL +S ESL ACVDVV RYPG++RFR HLIHCMLAA HFFNRRDMYDAMRGVYNSV PMGY Q PPYEEWR+I QVC +++CRSMEA+ LQ R E P+Q+NA ++ TS S G M S SG D+++SG PP AP TATGATA+ S LP+T H Q GND AA GDM Q GL ATA M +PE V+ EAGGV WSR A + +RS A + + +VV G EM +TDADLLD A FA DEGLL E
Sbjct: 523 AIAGDLDKSFESLQACVDVVLRYPGLVRFRSHLIHCMLAASHFFNRRDMYDAMRGVYNSVGPMGYPQIPPYEEWRTIRQVCPHVMCRSMEAERLQ-RYGEGPVQTNAPSEEPVTSEPSPGSMTSPLSGADSQSSGAPPEGLASEEQGSLAPTTATGATAVSSPLPDTPHTSATFVQDVDGNDGAAT---GDMPLQRGLVATA-MPIPELVY-SAKGEAGGVRHAGWSRAAATGEQVRSSTTAPAPGSPKIGFKWWGGEVVSGGAEMNMTDADLLDIAA------------AFANDEGLLEE 805
BLAST of mRNA_E_fasciculatus_S2_contig910.17179.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTD6_ECTSI) HSP 1 Score: 228 bits (580), Expect = 6.340e-66 Identity = 151/311 (48.55%), Postives = 182/311 (58.52%), Query Frame = 1
Query: 4 LSGDLVESLESLDACVDVVQRYPGIIRFRPHLIHCMLAAGHFFNRRDMYDAMRGVYNSVLPMGYSQAPPYEEWRSISQVCGNILCRSMEAQALQPRDEEVPLQSNAAADGLATSGLSSGLMESS--GTDTRNSGCPPAPA--------TATGATAMPSVLPETSHARQRVSQAGVGNDDAAADAAGDMRWQPGLEATAAMLVPESVFPDEASEAGGVGEDWSRPA-GPEQHLRSEG----GTAAAAAHTHTVEPVEE----DVVLWGREMTLTDADLLDAATXXXXXXXXXXATVFARDEGLLGEGL*QNI 879
++GD+ + ++ L A D+V RYPGI+RFRPH IHC LA HF RRDMYDAM GVYNS+ P G +APPYEEWR+I+Q+C N+ CRS EA+ + E +Q+N + + TSG +SG M+S G + +N G PA T T ATA+PS LPE HA +S+ GV N D AD A D R QP E AML+PESVF EA+EAGGV WS A GP Q SEG G AAAAA + E D+ L G EM LTD DLLDAA VFA DEGLL GL I
Sbjct: 200 VNGDVEDLIKCLQASADIVLRYPGIVRFRPHFIHCTLAVSHFSKRRDMYDAMNGVYNSIRPPGCWRAPPYEEWRTITQICDNMFCRSFEAEIHKAHHGEGLMQTNVSDNEDVTSGPASGSMKSPCIGAERQNGGSLPAELCQRLPVSMTPTDATAVPSPLPEPRHAPPSLSEDGVRNGDTGADDARDRRRQPVAET--AMLIPESVFSAEAAEAGGVRAGWSSAAAGPGQQFCSEGNNGAGGAAAAAVARNPKVGPEVWGGDMALGGSEMALTDEDLLDAAA------------VFASDEGLLEMGLYSGI 496
BLAST of mRNA_E_fasciculatus_S2_contig910.17179.1 vs.
Match: Zn(2)-C6 (fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0W7_9PHAE) HSP 1 Score: 228 bits (582), Expect = 1.070e-63 Identity = 155/305 (50.82%), Postives = 184/305 (60.33%), Query Frame = 1
Query: 1 ALSGDLVESLESLDACVDVVQRYPGIIRFRPHLIHCMLAAGHFFNRRDMYDAMRGVYNSVLPMGYSQAPPYEEWRSISQVCGNILCRSMEAQALQPRDEEVPLQSNAAADGLATSGLSSGLMES--SGTDTRNSGCPPA-------------PATATGATAMPSVLPETSHARQRVSQAGVGNDDAAADAAGDMRWQPGLEATAAMLVPESVFPDEASEAGGVGE-DWSRPAGPEQHLRSEGGTAAAAAHTHTVEPVEEDVVLWGREMTLTDADLLDAATXXXXXXXXXXATVFARDEGLLGEGL 867
A++G+LV++ ESL+ACVDVV RYPG++RF+ HLIHCMLAA HFFNRRDMYDAM+ VYNSV PMGY QAPPYEEWR+I QVC +ILCRS+E + Q DE + +Q+NAA TS SGL S SG+D+++SG PPA TATG TA+ S LP H G GND A+A GDM QPGL ATA L+PESV+ EAG V DW A + RS G A + +E DVV EM +TDADLLD A VFA DEGLL E L
Sbjct: 526 AVAGELVKAFESLEACVDVVLRYPGLVRFKSHLIHCMLAASHFFNRRDMYDAMKRVYNSVGPMGYPQAPPYEEWRTIRQVCPHILCRSLEVELHQHLDEGL-VQANAAPKDPETSEPLSGLFNSTLSGSDSQSSGPPPAGLAXXXXXXXXXXXXTATGVTAVSSPLPAPPHTFPTFMPDGGGNDGASA---GDMPLQPGLVATA-TLIPESVY-SAKGEAGDVRHADWLHAAATGERPRSGTGARAPGSPKIGLEWWGGDVVSGEAEMNMTDADLLDIAA------------VFANDEGLLEEEL 812
BLAST of mRNA_E_fasciculatus_S2_contig910.17179.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0K0_9PHAE) HSP 1 Score: 219 bits (558), Expect = 3.490e-60 Identity = 161/334 (48.20%), Postives = 184/334 (55.09%), Query Frame = 1
Query: 1 ALSGDLVESLESLDACVDVVQRYPGIIRFR--PHLIHCMLAAGHFFNRRDMYDAMRGVYNSVLPMGYSQAPPYEEWRSISQVCGNILC-------------------------------RSMEAQALQPRDEEVPLQSNAAADGLATSGLSSGLMES--SGTDTRNSGCPP-----------APATATGATAMPSVLPETSHARQRVSQAGVGNDDAAADAAGDMRWQPGLEATAAMLVPESVFPDEASEAGGVGE-DWSRPAGPEQHLRSEGGTAAAAAHTHTVEPVEEDVVLWGREMTLTDADLLDAATXXXXXXXXXXATVFARDEGLLGE 861
A++G+LV++ ESL+ACVDVV RYPG++RFR HLIHCMLAA HFFNRRDMYDAMRGVYNSV PMGY Q PPYEEWR+I QVC +ILC RSME + LQ R E P+Q+NAA++ L S SG + S SG DT++SG PP AP A G TA+ S LPE SH G NDDAAA DM QPGL ATA M +PE V+ EAGGV DWS A RS G A + E DVV EM +TDADLLD A VFA DEGLL E
Sbjct: 522 AVAGELVKAFESLEACVDVVLRYPGLVRFRRTSHLIHCMLAASHFFNRRDMYDAMRGVYNSVGPMGYPQVPPYEEWRTIRQVCPHILCSFRTDLLPPRCSNVFGVFRRIRPHSFVAPVKRSMEVERLQ-RYGEGPVQTNAASEELVMSEALSGSITSPLSGADTKSSGAPPGGLASEEQGSLAPTRAIGGTAVSSPLPEFSHTLATFVPDGGRNDDAAAR---DMPLQPGLVATA-MPIPEPVY-SAKGEAGGVRRADWSGAAATGGQPRSGTGARAPDSPKIGFEWWGGDVVSGEAEMNMTDADLLDIAA------------VFANDEGLLEE 837 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig910.17179.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig910.17179.1 >prot_E_fasciculatus_S2_contig910.17179.1 ID=prot_E_fasciculatus_S2_contig910.17179.1|Name=mRNA_E_fasciculatus_S2_contig910.17179.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=254bp MLAAGHFFNRRDMYDAMRGVYNSVLPMGYSQAPPYEEWRSISQVCGNILCback to top mRNA from alignment at E_fasciculatus_S2_contig910:3804..7039- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig910.17179.1 ID=mRNA_E_fasciculatus_S2_contig910.17179.1|Name=mRNA_E_fasciculatus_S2_contig910.17179.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3236bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig910:3804..7039- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig910:3804..7039- >mRNA_E_fasciculatus_S2_contig910.17179.1 ID=mRNA_E_fasciculatus_S2_contig910.17179.1|Name=mRNA_E_fasciculatus_S2_contig910.17179.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=762bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig910:3804..7039- (Ectocarpus fasciculatus EfasUO2)back to top |