mRNA_E_fasciculatus_S2_contig9096.17173.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9096.17173.1
Unique NamemRNA_E_fasciculatus_S2_contig9096.17173.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9096.17173.1 vs.
Match: DUF4395 (domain-containing protein n=1 Tax=Corynebacterium terpenotabidum Y-11 TaxID=1200352 RepID=S4XC43_9CORY)

HSP 1 Score: 52.8 bits (125), Expect = 2.200e-6
Identity = 27/58 (46.55%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:   76 TPGAPKRFAQLIGLLFAAVSMVLAFLEQYVAMGVIGACLFGASFLQGFGNFCIACRVF 249
            T GAPKRFAQ IG++F+  ++VL  +   VA  V+   L  A+ L+GF  FC+ CR+F
Sbjct:  112 TAGAPKRFAQGIGVVFSGAALVLRLVGWPVAADVVLLALVVAASLEGFAGFCLGCRIF 169
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9096.17173.1 vs.
Match: DUF4395 (family protein n=6 Tax=root TaxID=1 RepID=A0A6I3B9H6_9ACTN)

HSP 1 Score: 49.3 bits (116), Expect = 3.160e-5
Identity = 26/70 (37.14%), Postives = 39/70 (55.71%), Query Frame = 1 
Query:   40 LVEHTVQLRSRFTPGAPKRFAQLIGLLFAAVSMVLAFLEQYVAMGVIGACLFGASFLQGFGNFCIACRVF 249
            +V   +    +F PG PKRFAQ IGL FAA +++L  L+   A  ++ A L  A+ L+     C+ C +F
Sbjct:   66 VVTPKLNFNHKFVPGPPKRFAQTIGLTFAATALILTLLDYSYAANLVIAALVIAATLESVFAICLGCIMF 135
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9096.17173.1 vs.
Match: DUF4395 (domain-containing protein n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A4V0WXK8_9ACTN)

HSP 1 Score: 49.3 bits (116), Expect = 3.280e-5
Identity = 25/70 (35.71%), Postives = 40/70 (57.14%), Query Frame = 1 
Query:   40 LVEHTVQLRSRFTPGAPKRFAQLIGLLFAAVSMVLAFLEQYVAMGVIGACLFGASFLQGFGNFCIACRVF 249
            ++   +    +F PG PKRFAQ IGL FAA ++ L+ L+  +A  ++ A L  A+ L+     C+ C +F
Sbjct:   66 IITPKLNFNHKFVPGPPKRFAQTIGLTFAATALTLSLLDYSLAAKLVIAALIFAATLESVFAICLGCIMF 135
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9096.17173.1 vs.
Match: PF14340 (domain protein n=3 Tax=Leptospira wolffii TaxID=409998 RepID=S3V3S2_9LEPT)

HSP 1 Score: 48.1 bits (113), Expect = 8.630e-5
Identity = 35/89 (39.33%), Postives = 47/89 (52.81%), Query Frame = 1 
Query:    1 RSLLGPNRRAPNPLVEHTV----QLRSRFTPGAPKRFAQLIGLLFAAVSMVLAFLEQ-YVAMGVIGACLFGASFLQGFGNFCIACRVFG 252
            R L GP       L  H +    +L SR  PG PKRFAQL+GL+F++ ++VL    Q +    V+G  +F A+     G FC  C VFG
Sbjct:   49 RVLYGPKFSLFARLAIHVIVPGLKLGSRTVPGPPKRFAQLVGLVFSSSALVLLLFGQIFYFQIVLGVLVFFATLESALG-FCAGCFVFG 136
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9096.17173.1 vs.
Match: DUF4395 (domain-containing protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A2E6Z0J8_9CHLR)

HSP 1 Score: 48.1 bits (113), Expect = 9.960e-5
Identity = 22/70 (31.43%), Postives = 40/70 (57.14%), Query Frame = 1 
Query:   40 LVEHTVQLRSRFTPGAPKRFAQLIGLLFAAVSMVLAFLEQYVAMGVIGACLFGASFLQGFGNFCIACRVF 249
            ++   + ++ +   G PKRFAQLIGL+F+ ++++L          ++ + L   +FL+ F  FC  C+VF
Sbjct:   78 IIVPNINIKEKLVAGPPKRFAQLIGLIFSGLALILFIFSLKEVSMILISILIIFTFLESFLGFCAGCKVF 147
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9096.17173.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
DUF43952.200e-646.55domain-containing protein n=1 Tax=Corynebacterium ... [more]
DUF43953.160e-537.14family protein n=6 Tax=root TaxID=1 RepID=A0A6I3B9... [more]
DUF43953.280e-535.71domain-containing protein n=2 Tax=Actinobacteria T... [more]
PF143408.630e-539.33domain protein n=3 Tax=Leptospira wolffii TaxID=40... [more]
DUF43959.960e-531.43domain-containing protein n=1 Tax=Chloroflexi bact... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9096contigE_fasciculatus_S2_contig9096:5581..5835 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size255
Hectar predicted targeting categorysignal anchor
Exons1
Cds size255
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842562.026141-CDS-E_fasciculatus_S2_contig9096:5580..58351696842562.026141-CDS-E_fasciculatus_S2_contig9096:5580..5835Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9096 5581..5835 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9096.17173.1prot_E_fasciculatus_S2_contig9096.17173.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9096 5581..5835 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9096.17173.1

>prot_E_fasciculatus_S2_contig9096.17173.1 ID=prot_E_fasciculatus_S2_contig9096.17173.1|Name=mRNA_E_fasciculatus_S2_contig9096.17173.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=85bp
RSLLGPNRRAPNPLVEHTVQLRSRFTPGAPKRFAQLIGLLFAAVSMVLAF
LEQYVAMGVIGACLFGASFLQGFGNFCIACRVFG*
back to top

mRNA from alignment at E_fasciculatus_S2_contig9096:5581..5835+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9096.17173.1 ID=mRNA_E_fasciculatus_S2_contig9096.17173.1|Name=mRNA_E_fasciculatus_S2_contig9096.17173.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=255bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9096:5581..5835+ (Ectocarpus fasciculatus EfasUO2)
AGGTCCCTTCTCGGTCCGAATAGACGAGCACCTAACCCCTTAGTTGAGCA
CACAGTACAACTTCGTTCCAGGTTCACGCCAGGAGCGCCCAAGAGGTTCG
CGCAGTTGATCGGCCTGCTGTTCGCCGCCGTGTCCATGGTGCTGGCCTTT
CTTGAGCAGTACGTGGCAATGGGAGTTATTGGCGCTTGTCTGTTCGGGGC
AAGCTTTTTGCAAGGTTTCGGCAACTTCTGCATCGCCTGCAGGGTCTTTG
GGTGA
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9096:5581..5835+

>mRNA_E_fasciculatus_S2_contig9096.17173.1 ID=mRNA_E_fasciculatus_S2_contig9096.17173.1|Name=mRNA_E_fasciculatus_S2_contig9096.17173.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=255bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9096:5581..5835+ (Ectocarpus fasciculatus EfasUO2)
AGGTCCCTTCTCGGTCCGAATAGACGAGCACCTAACCCCTTAGTTGAGCA
CACAGTACAACTTCGTTCCAGGTTCACGCCAGGAGCGCCCAAGAGGTTCG
CGCAGTTGATCGGCCTGCTGTTCGCCGCCGTGTCCATGGTGCTGGCCTTT
CTTGAGCAGTACGTGGCAATGGGAGTTATTGGCGCTTGTCTGTTCGGGGC
AAGCTTTTTGCAAGGTTTCGGCAACTTCTGCATCGCCTGCAGGGTCTTTG
GGTGA
back to top