mRNA_E_fasciculatus_S2_contig9080.17161.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9080.17161.1
Unique NamemRNA_E_fasciculatus_S2_contig9080.17161.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9080.17161.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7E7_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 1.200e-30
Identity = 58/63 (92.06%), Postives = 62/63 (98.41%), Query Frame = 1 
Query:  109 KVLVRLRHVYGHDAELYDEFSRELLSPLLRLVPSALSSLDAVRLSSRVLVSLRENCVACLVRK 297
            +VLVRLRHVY HDAELY+EFSRELLSP+LRLVPSALSSLDAVRLSSRV+VSLRENCVACLVRK
Sbjct:   34 EVLVRLRHVYDHDAELYEEFSRELLSPVLRLVPSALSSLDAVRLSSRVVVSLRENCVACLVRK 96
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9080.17161.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.200e-3092.06protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9080contigE_fasciculatus_S2_contig9080:37..1668 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size300
Hectar predicted targeting categoryother localisation
Exons2
Cds size300
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842561.1108563-CDS-E_fasciculatus_S2_contig9080:36..1471696842561.1108563-CDS-E_fasciculatus_S2_contig9080:36..147Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9080 37..147 +
1696842561.1224887-CDS-E_fasciculatus_S2_contig9080:1479..16681696842561.1224887-CDS-E_fasciculatus_S2_contig9080:1479..1668Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9080 1480..1668 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9080.17161.1prot_E_fasciculatus_S2_contig9080.17161.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9080 37..1668 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9080.17161.1

>prot_E_fasciculatus_S2_contig9080.17161.1 ID=prot_E_fasciculatus_S2_contig9080.17161.1|Name=mRNA_E_fasciculatus_S2_contig9080.17161.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=100bp
ANGEEGEGQQEEEEEEEEEEEEEEEEEEADKFPPDGKVLVRLRHVYGHDA
ELYDEFSRELLSPLLRLVPSALSSLDAVRLSSRVLVSLRENCVACLVRKV
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mRNA from alignment at E_fasciculatus_S2_contig9080:37..1668+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9080.17161.1 ID=mRNA_E_fasciculatus_S2_contig9080.17161.1|Name=mRNA_E_fasciculatus_S2_contig9080.17161.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1632bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9080:37..1668+ (Ectocarpus fasciculatus EfasUO2)
GCGAACGGCGAAGAAGGCGAAGGCCAGCAGGAGGAGGAAGAGGAGGAGGA
GGAGGAGGAGGAAGAAGAGGAGGAGGAGGAGGAAGCCGACAAGTTTCCAC
CCGACGGCAAGGTGGGCATGCCTTGACATGAAACGGAGACATGGGAGAGG
AGAGGGACGAGCAGATGTTCAGAACGGCGCTTGAGTGCGAAGCCGGCATG
AGGCTGGAGGCTAGATAGCGGAGCCACAAACCGCAAGCAAGCGCGGCACC
CAATGCAGCAAAACGTTGGGAACATGGGGAGAGACGAGCAGATGTAATAA
CAGCCGCGCTCTGTGTGAAGTCAGTGCGACAACCCCGGTACCAAATAGTA
GCAACGACAGCAACGAGACGACAGTACTCCCGTAGGTGGTATGACACGAG
ATACCATACCCCCTGGACCCATATTCAAAGCTACATGTACTCGATTGCTC
CACGACGAAGAGGATGTCAAAATTAAATTATACGTTTTCGGAAAGCTCTC
TCTCTCGACGAGACGGCGGTTCTAATGCCTTCATTTACGGCACCGTCACT
CTTTTTCCTGCAAATTACCTTTGGAAAATCGGTCCAGGCCAGGGGGTGTG
ATGTCTAACGTCATGCAACCTTACGTCCACACACCACACACGGTTATTTC
ACTGTCACCAACAGTAAGCTGACTACCAAACCGACAACCCATAAAACGCA
CACACACGCACACACACGGGTATTGATTCGGTATCTGTCTTGAATCCGGA
GAGTAGCATGGACCCCCCTCTATAATGATGTTCCCTCAGGGGGTCCCGGA
TCGTGCCTCTAGCTAGAAGAATTTTCTGTATTCAACCGCACTGAGACTTA
CGTCTTGTCATGGTCAGCCGGTTGGCGCAGTCGATGATAATAAAAAAAAA
CAAGCACAATCACACCCTTTTTATCCCTCTACAAGACTGGCGTATTTCCT
TTGGTTCGCCGATGAGCACGGTCGACGCTAACTCAACAAAACACACACAC
ACACACTAAAGGGCTGGCGTCTTTTCATTGGTTAGCCGGTTAGTTATTGC
GGTTGATGCCAGTTAAGAAAACACACACACGCGCTAATACAACACACACG
CACAGCGTTCTGTGTTTTCAACCGCACAGTAAGACTGACGTCTTTTCATT
GGCCAGCCGATTACAGTAGCGCGGTCGATGCTAATTCAACAAGCCCCACA
CGAAACAACCCCTCCCCCGCACACACGTTTTTACAACCGCACCTAAGATT
GACGTCTTTTCATTGGCCAGCCGATTACACTCGCGCGGTCAATGCTAAAG
GTATAGACATACAGGCAACCTTCCTCTGATGCTATGGATTCATTGCTAAT
CTATCTTAAAGACTCTTTTCTTAGATAGAGATGGATTCGTTGTGTCATAT
TAAGAAAATAATAAAAAAAAAACACCCACCCACAAACGTGCAGGTGCTTG
TGCGGCTACGCCACGTGTACGGCCACGACGCCGAGCTGTACGACGAGTTC
TCCCGCGAGCTGCTGTCGCCGCTGCTCCGCCTCGTGCCGTCGGCGCTGTC
CTCCCTCGACGCCGTGCGGCTCTCGTCGAGGGTGCTGGTGTCTCTTCGGG
AGAACTGCGTCGCCTGCCTCGTCCGAAAGGTA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9080:37..1668+

>mRNA_E_fasciculatus_S2_contig9080.17161.1 ID=mRNA_E_fasciculatus_S2_contig9080.17161.1|Name=mRNA_E_fasciculatus_S2_contig9080.17161.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=300bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9080:37..1668+ (Ectocarpus fasciculatus EfasUO2)
GCGAACGGCGAAGAAGGCGAAGGCCAGCAGGAGGAGGAAGAGGAGGAGGA
GGAGGAGGAGGAAGAAGAGGAGGAGGAGGAGGAAGCCGACAAGTTTCCAC
CCGACGGCAAGGTGCTTGTGCGGCTACGCCACGTGTACGGCCACGACGCC
GAGCTGTACGACGAGTTCTCCCGCGAGCTGCTGTCGCCGCTGCTCCGCCT
CGTGCCGTCGGCGCTGTCCTCCCTCGACGCCGTGCGGCTCTCGTCGAGGG
TGCTGGTGTCTCTTCGGGAGAACTGCGTCGCCTGCCTCGTCCGAAAGGTA
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