mRNA_E_fasciculatus_S2_contig9072.17157.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9072.17157.1 vs.
Match: Myb-like (DNA-binding domain containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIR6_ECTSI) HSP 1 Score: 265 bits (676), Expect = 1.930e-73 Identity = 126/145 (86.90%), Postives = 139/145 (95.86%), Query Frame = 2
Query: 1088 NTNMLEFFKGVNWPEVARLMSNGRSDKQCRLKWFEAIDPSVNRQRGWEAEEEARLRKAVEARGVGEWRAVEMDMANWAQKRGMLRRTDHACRRRYISLEPEKHEKHIRYVKDRREVEPRLNAPSFAAHGFGKTEVTLEDFDLVHD 1522
NTNML+ F+GVNW EVARLMSNGRSDKQCRLKWFEAIDPSVNRQR W+AEE+ARLRKAVEARG+GEWRAVEMDMA+WAQKRG+LRRTDH+CRRRYI++EPEKHEKH+RYV+DRREVEPRLNAP AAHGFGKTEVTL+DFDLV D
Sbjct: 605 NTNMLDCFEGVNWQEVARLMSNGRSDKQCRLKWFEAIDPSVNRQREWDAEEDARLRKAVEARGMGEWRAVEMDMASWAQKRGVLRRTDHSCRRRYIAIEPEKHEKHLRYVQDRREVEPRLNAPCLAAHGFGKTEVTLKDFDLVDD 749
BLAST of mRNA_E_fasciculatus_S2_contig9072.17157.1 vs.
Match: Uncharacterized (protein n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WN07_CAPO3) HSP 1 Score: 81.6 bits (200), Expect = 4.520e-12 Identity = 45/119 (37.82%), Postives = 73/119 (61.34%), Query Frame = 1
Query: 1 LRWTYVDMPGATIDPTWSKEEDLAIMVQADERGAREWVKIAEEVRKVNGGLRRRSAIDCLRRYQGTLNTKLVTWNKWSLEEDEMLHDAIKRHGSKAWLSVARDVPGRSTLQCHNRFLKS 357
++W D P P W+KEED+A++ QA+ R R+W IA V R+ LRR+Q +LN+ L+ +KW++EED+ML +AI+ +G + W ++A +PGR+ QC +R+ K+
Sbjct: 554 IQWVNNDHPRINKGP-WTKEEDIALLKQANLRKKRDWEAIAHAVNT------NRTPGQYLRRFQRSLNS-LMLHSKWTVEEDDMLREAIRLYGERNWQAIAARLPGRTGQQCLHRWHKT 664
BLAST of mRNA_E_fasciculatus_S2_contig9072.17157.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H8G2_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 8.220e-12 Identity = 33/65 (50.77%), Postives = 46/65 (70.77%), Query Frame = 1
Query: 169 IDCLRRYQGTLNTKLVTWNKWSLEEDEMLHDAIKRHGSKAWLSVARDVPGRSTLQCHNRFLKSGL 363
+ CL+RYQ TLNTKL+ ++WS EED +L A++ G WL V+ +PGRS++QC NR+ KS L
Sbjct: 1 MSCLKRYQRTLNTKLLNNDEWSSEEDLLLKAAVESCGKGKWLEVSLQIPGRSSVQCMNRWAKSPL 65
BLAST of mRNA_E_fasciculatus_S2_contig9072.17157.1 vs.
Match: Myb (transcription factor n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2UXS3_NAEGR) HSP 1 Score: 76.3 bits (186), Expect = 1.930e-10 Identity = 40/103 (38.83%), Postives = 64/103 (62.14%), Query Frame = 1
Query: 49 WSKEEDLAIMVQADERGAREWVKIAEEVRKVNGGLRRRSAIDCLRRYQGTLNTKLVTWNKWSLEEDEMLHDAIKRHGSKAWLSVARDVPGRSTLQCHNRFLKS 357
WSKEED+ ++ AD+ +W KI+ ++ + L+RR I C RRYQ +LNT ++ +KW+ EED L +A+K G K W +A + R+ QC +R++K+
Sbjct: 364 WSKEEDINLLYVADDSKGHDWSKISNKLYETQP-LKRRP-IHCFRRYQRSLNTNMMR-SKWTEEEDRKLMEAVKSFGEKNWQQIANQLEERTGQQCLHRWMKT 463
BLAST of mRNA_E_fasciculatus_S2_contig9072.17157.1 vs.
Match: Hypothetical (protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HSF7_9EUKA) HSP 1 Score: 73.6 bits (179), Expect = 9.860e-10 Identity = 44/123 (35.77%), Postives = 67/123 (54.47%), Query Frame = 1
Query: 1 LRWTYVDMP----GATIDPTWSKEEDLAIMVQADERGAREWVKIAEEVRKVNGGLRRRSAIDCLRRYQGTLNTKLVTWNKWSLEEDEMLHDAIKRHGSKAWLSVARDVPGRSTLQCHNRFLKS 357
L+W D+P G + W+K ED ++ A + EW +IA+ + R+A C RYQ +LNT +V KW+ +EDE L DAI+++G K W VA + GR+ QC +R+ K+
Sbjct: 254 LQWLNNDLPSFISGQPANRGWTKAEDKRLLDLAKQYKNHEWEQIAKALGT------NRTAFQCFSRYQRSLNTAIVK-GKWTPQEDERLKDAIQQYGDKNWQQVAHYLNGRTGQQCLHRWQKT 369
BLAST of mRNA_E_fasciculatus_S2_contig9072.17157.1 vs.
Match: snRNAa-activating (protein complex subunit 4 n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI000711C795) HSP 1 Score: 72.0 bits (175), Expect = 1.960e-9 Identity = 41/103 (39.81%), Postives = 63/103 (61.17%), Query Frame = 1
Query: 49 WSKEEDLAIMVQADERGAREWVKIAEEVRKVNGGLRRRSAIDCLRRYQGTLNTKLVTWNKWSLEEDEMLHDAIKRHGSKAWLSVARDVPGRSTLQCHNRFLKS 357
W+ EED +++ A+ R R WVKIA +V NG R I C +RY L + ++ KW+ EED +L D +++ G+KAW VA+ +PGRS QC +R+ ++
Sbjct: 258 WTLEEDKKLVLAAERRKKRCWVKIASDVG--NG----RVPIQCFQRYIRELEMQ-GSYKKWTDEEDGILLDTVQKTGTKAWKVVAKKLPGRSWDQCRSRYYQA 353
BLAST of mRNA_E_fasciculatus_S2_contig9072.17157.1 vs.
Match: Myb (transcription factor (Fragment) n=2 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6MSM8_9EUKA) HSP 1 Score: 72.8 bits (177), Expect = 2.120e-9 Identity = 41/117 (35.04%), Postives = 61/117 (52.14%), Query Frame = 1
Query: 4 RWTYVDMPGATIDPTWSKEEDLAIMVQADERGAREWVKIAEEVRKVNGGLRRRSAIDCLRRYQGTLNTKLVTWNKWSLEEDEMLHDAIKRHGSKAWLSVARDVPGRSTLQCHNRFLK 354
RW VD P W+KEED+ ++ E G W +A + + G R+R+ C RYQ +LN + + W EDE+L A++ HG K W +VA + GR+ QC +R+ K
Sbjct: 362 RWMNVDSPYIN-RAAWTKEEDVQLLSLVSEYGGYHWQAVANNISE--GKERKRTPAACFIRYQRSLNKNTLR-SDWDSAEDEILRAAVEEHGDKNWCTVAEALEGRNGQQCLHRWQK 474
BLAST of mRNA_E_fasciculatus_S2_contig9072.17157.1 vs.
Match: Uncharacterized (protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KDX6_CHABU) HSP 1 Score: 71.6 bits (174), Expect = 6.230e-9 Identity = 42/118 (35.59%), Postives = 67/118 (56.78%), Query Frame = 1
Query: 1 LRWTYVDMPGATIDPTWSKEEDLAIMVQADERGAREWVKIAEEVRKVNGGLRRRSAIDCLRRYQGTLNTKLVTWNKWSLEEDEMLHDAIKRHGSKAWLSVARDVPGRSTLQCHNRFLK 354
++W D P P WSK ED ++ A E W +IAE ++ G R+A CL R+Q +LN +++ +KW +EDE+L A++++G W +A+ VPGR+ QC +R+ K
Sbjct: 549 IQWLNQDDPKIKQGP-WSKVEDKRLLSIAREEKYVNWSRIAE---RLGSG---RTAGQCLTRFQRSLNAQILN-SKWIPQEDELLRKAVRKYGEHRWQDIAQCVPGRTGHQCLHRWTK 658
BLAST of mRNA_E_fasciculatus_S2_contig9072.17157.1 vs.
Match: Uncharacterized (protein n=3 Tax=Lactuca TaxID=4235 RepID=A0A2J6LXG4_LACSA) HSP 1 Score: 68.9 bits (167), Expect = 3.290e-8 Identity = 39/118 (33.05%), Postives = 59/118 (50.00%), Query Frame = 1
Query: 4 RWTYVDMPGATIDPTWSKEEDLAIMVQADERGAREWVKIAEEVRKVNGGLRRRSAIDCLRRYQGTLNTKLVTWNKWSLEEDEMLHDAIKRHGSKAWLSVARDVPGRSTLQCHNRFLKS 357
RW + P +P WS ED ++ RG W+ IA+ + R+ CL R+Q +LN ++ N+W+ EDE L +A+ +G W VA + GR+ QC NR+ KS
Sbjct: 410 RWMNSEDPLINREP-WSLTEDKKLLYTVQNRGLSNWIDIADALGT------NRTPFQCLSRFQRSLNASIIK-NEWTPPEDEELRNAVAEYGETNWQLVASTLEGRTGTQCSNRWKKS 519
BLAST of mRNA_E_fasciculatus_S2_contig9072.17157.1 vs.
Match: uncharacterized (protein LOC110422670 isoform X3 n=3 Tax=Herrania umbratica TaxID=108875 RepID=A0A6J1AYV8_9ROSI) HSP 1 Score: 68.9 bits (167), Expect = 3.300e-8 Identity = 41/118 (34.75%), Postives = 61/118 (51.69%), Query Frame = 1
Query: 4 RWTYVDMPGATIDPTWSKEEDLAIMVQADERGAREWVKIAEEVRKVNGGLRRRSAIDCLRRYQGTLNTKLVTWNKWSLEEDEMLHDAIKRHGSKAWLSVARDVPGRSTLQCHNRFLKS 357
RW + P +P W+ EED ++ E+G W IA +R R+ CL RYQ +LN ++ + W+ EED+ L A++ G W SVA + GR+ QC NR++KS
Sbjct: 205 RWLNHEDPLINCNP-WTAEEDKNLLFIVQEKGISNWFDIAVSLRS------NRTPFQCLARYQRSLNACILKGD-WTEEEDDQLRIAVEVFGECDWQSVASTLKGRTGTQCSNRWIKS 314 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9072.17157.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9072.17157.1 >prot_E_fasciculatus_S2_contig9072.17157.1 ID=prot_E_fasciculatus_S2_contig9072.17157.1|Name=mRNA_E_fasciculatus_S2_contig9072.17157.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=337bp MTMTTKIMYRRAAAAAAAVAAAAAAEAACEGTTLTPPRPPGTGTTTTTGPback to top mRNA from alignment at E_fasciculatus_S2_contig9072:679..6150+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig9072.17157.1 ID=mRNA_E_fasciculatus_S2_contig9072.17157.1|Name=mRNA_E_fasciculatus_S2_contig9072.17157.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5472bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9072:679..6150+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9072:679..6150+ >mRNA_E_fasciculatus_S2_contig9072.17157.1 ID=mRNA_E_fasciculatus_S2_contig9072.17157.1|Name=mRNA_E_fasciculatus_S2_contig9072.17157.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1011bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9072:679..6150+ (Ectocarpus fasciculatus EfasUO2)back to top |