mRNA_E_fasciculatus_S2_contig903.17123.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig903.17123.1
Unique NamemRNA_E_fasciculatus_S2_contig903.17123.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig903.17123.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig903contigE_fasciculatus_S2_contig903:3376..4076 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size240
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-16_001750.1
Cds size240
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842557.2833838-CDS-E_fasciculatus_S2_contig903:3375..34301696842557.2833838-CDS-E_fasciculatus_S2_contig903:3375..3430Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig903 3376..3430 +
1696842557.294172-CDS-E_fasciculatus_S2_contig903:3891..40761696842557.294172-CDS-E_fasciculatus_S2_contig903:3891..4076Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig903 3892..4076 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig903.17123.1prot_E_fasciculatus_S2_contig903.17123.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig903 3376..4076 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig903.17123.1

>prot_E_fasciculatus_S2_contig903.17123.1 ID=prot_E_fasciculatus_S2_contig903.17123.1|Name=mRNA_E_fasciculatus_S2_contig903.17123.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=80bp
MSRRGHSQPHLPATYREPARNSSVLPMRRRSTRYSRPSSSPPPISNEIPQ
RELLAVVVKLSVFPETPPSSLYVVITSTV*
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mRNA from alignment at E_fasciculatus_S2_contig903:3376..4076+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig903.17123.1 ID=mRNA_E_fasciculatus_S2_contig903.17123.1|Name=mRNA_E_fasciculatus_S2_contig903.17123.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=701bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig903:3376..4076+ (Ectocarpus fasciculatus EfasUO2)
ATGAGTCGTCGGGGTCACTCTCAGCCACACTTGCCTGCGACGTACAGGGA
ACCAGGTGAGAGCGATGAGGGACCGGGTGTAACAAGCAAGGATTGGTGGG
GGGAATTCAAGCGCGGTGCGGAGCAAGCGAGGCGCAACAGCATCCCATGG
GAACACCTTGCGTGATCCATTCTGGGCGTTTCGAAAAACATATGTTTCTC
TGCCGTCACCAATGCTACGATGTCGAACACAAGCGACAAAATACGACCAC
TACGAGTCATGAACGCCAAAGTAGTATTCTGCAAACATCTGTGAAAGGGA
GGAAAACGCTCACTGGTCGGTCTACGTATGCTCTACGTGTGCTCTCTGTC
TTGCGTCGCGCTGATTCATCTTGTGGGTAACTCTGCTTTCTTCGGAAGGC
CTAGTTCCTCACCTGAACGGAAGTTTCCACTGGGACAAGTGTCGAAGCGC
ACCCGCCTTCGAGAATTGCCGCATCATCATCACTCCATTCCTTGAACGCG
CCGCAAAGCCCCACAGCTCGCAACTCGTCGGTGCTCCCGATGCGACGGAG
GTCGACGAGATACTCCAGGCCTTCTTCGTCTCCTCCGCCGATCTCCAACG
AGATTCCGCAGAGAGAGCTGCTGGCTGTCGTAGTGAAACTGAGCGTGTTT
CCGGAGACTCCGCCATCGTCTTTGTACGTTGTGATCACCTCCACAGTGTA
G
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig903:3376..4076+

>mRNA_E_fasciculatus_S2_contig903.17123.1 ID=mRNA_E_fasciculatus_S2_contig903.17123.1|Name=mRNA_E_fasciculatus_S2_contig903.17123.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=240bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig903:3376..4076+ (Ectocarpus fasciculatus EfasUO2)
ATGAGTCGTCGGGGTCACTCTCAGCCACACTTGCCTGCGACGTACAGGGA
ACCAGCTCGCAACTCGTCGGTGCTCCCGATGCGACGGAGGTCGACGAGAT
ACTCCAGGCCTTCTTCGTCTCCTCCGCCGATCTCCAACGAGATTCCGCAG
AGAGAGCTGCTGGCTGTCGTAGTGAAACTGAGCGTGTTTCCGGAGACTCC
GCCATCGTCTTTGTACGTTGTGATCACCTCCACAGTGTAG
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