mRNA_E_fasciculatus_S2_contig9018.17114.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9018.17114.1
Unique NamemRNA_E_fasciculatus_S2_contig9018.17114.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9018.17114.1 vs.
Match: Putative (respiratory burst oxidase homolog protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C9_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 1.300e-17
Identity = 41/53 (77.36%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:   88 QNFRKKQQTKSRLDNDQRICKLDLMEADLSVVDNNLRKGSSTPETRNPTGIYL 246
            ++F    +T+SRLDNDQRICK+DLMEADLSVVD+NLRKGSSTPET NPT IYL
Sbjct:  112 EDFLDYSKTESRLDNDQRICKMDLMEADLSVVDSNLRKGSSTPETHNPTDIYL 164
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BLAST of mRNA_E_fasciculatus_S2_contig9018.17114.1 vs.
Match: Putative (respiratory burst oxidase protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C8_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 3.270e-9
Identity = 39/91 (42.86%), Postives = 54/91 (59.34%), Query Frame = 1 
Query:    1 DIEGYISRTIQGTAVVAEWAPPLVS--PRPPQNFRKKQQTK-------SRLDNDQRICKLDLMEADLSVVDNNLRKGSSTPETRNPTGIYL 246
            DI  +I+ T++GTAVVA+WAPP+ S  P P  +  ++Q T        +RL+  QRI K DLMEADL+VVD++L K          TG  +
Sbjct:  779 DIAAFITGTVRGTAVVAQWAPPVDSRPPAPSSSSPRQQPTAGGLRQMLTRLNTGQRISKRDLMEADLTVVDSSLAKSKKPSSVSGVTGFDM 869
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BLAST of mRNA_E_fasciculatus_S2_contig9018.17114.1 vs.
Match: FAD-binding (FR-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI2_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 1.690e-6
Identity = 37/92 (40.22%), Postives = 51/92 (55.43%), Query Frame = 1 
Query:    1 DIEGYISRTIQGTAVVAEWAPPLVSPRPPQNFRKK----------QQTKSRLDNDQRICKLDLMEADLSVVDNNLRKGSSTPETRNPTGIYL 246
            DI  +I+ T++GTAVVA+WAPP+ S RP                 +Q  +RL+  QRI K DLMEADL+VV+ +L K      T   +G  +
Sbjct:  794 DIAAFITGTVRGTAVVAQWAPPVES-RPXXXXXXXXXXXPTAGGLRQMLTRLNTGQRISKRDLMEADLTVVNCSLAKSKKPSSTSGVSGFDM 884
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9018.17114.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Putative1.300e-1777.36respiratory burst oxidase homolog protein n=1 Tax=... [more]
Putative3.270e-942.86respiratory burst oxidase protein n=1 Tax=Ectocarp... [more]
FAD-binding1.690e-640.22FR-type domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9018contigE_fasciculatus_S2_contig9018:5302..6256 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score65.1
Seed ortholog evalue1.8e-08
Seed eggNOG ortholog2880.D7G8C8
Model size248
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor
EggNOG OGsKOG0039@1,KOG0039@2759
Cds size246
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842556.5006754-CDS-E_fasciculatus_S2_contig9018:5301..53461696842556.5006754-CDS-E_fasciculatus_S2_contig9018:5301..5346Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9018 5302..5346 -
1696842556.512081-CDS-E_fasciculatus_S2_contig9018:5616..57061696842556.512081-CDS-E_fasciculatus_S2_contig9018:5616..5706Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9018 5617..5706 -
1696842556.5229394-CDS-E_fasciculatus_S2_contig9018:6145..62561696842556.5229394-CDS-E_fasciculatus_S2_contig9018:6145..6256Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9018 6146..6256 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9018.17114.1prot_E_fasciculatus_S2_contig9018.17114.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9018 5302..6256 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9018.17114.1

>prot_E_fasciculatus_S2_contig9018.17114.1 ID=prot_E_fasciculatus_S2_contig9018.17114.1|Name=mRNA_E_fasciculatus_S2_contig9018.17114.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=82bp
DIEGYISRTIQGTAVVAEWAPPLVSPRPPQNFRKKQQTKSRLDNDQRICK
LDLMEADLSVVDNNLRKGSSTPETRNPTGIYL
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mRNA from alignment at E_fasciculatus_S2_contig9018:5302..6256-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9018.17114.1 ID=mRNA_E_fasciculatus_S2_contig9018.17114.1|Name=mRNA_E_fasciculatus_S2_contig9018.17114.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=955bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9018:5302..6256- (Ectocarpus fasciculatus EfasUO2)
GACATCGAGGGTTATATTTCGCGCACCATCCAGGGTACGGCGGTGGTAGC
CGAATGGGCACCCCCGCTCGTCTCACCCCGGCCGCCACAAAATTTCAGGA
AGAAGCAGCAGGTACACATGTTTTCTTCGCAACACCCGGAACCCCGATAG
GTGTCCATCGTATGTCCTCGGTGGACCATTCATTGTTGTTTCATTGTCAC
TGGTTCAGTGGAGTTTCTTCAAACTAAATGGACGTTGCCGTCATGTCAAC
ACGCCTGCTATGCCTTCCGTTCAGCTTCGAGGGAGGGAAGCGCAGGTGGA
AATATGTCTCGTGGTCTCTAACTAGCCGCGATGTTTCAACCCAGGACCAC
TACGATTTGATGTTGCGCGATACGACCGCATGTTCTCACTGTCCTGTCGC
AGGAGCGAACTACCAGCGGAACCTCGCAAAAGCGAACTCGAAAACGCAGG
CGAACACCTTGCCCCTCCCCCCGCCTCTATCGTCTAAATCGTAGGAAGAC
CACACCAACTTGAACCTGTGATCGTTCGTGCGTTTTCACGTATGCCGCAG
ACAAAGTCGCGGCTGGATAACGACCAACGCATCTGCAAGTTGGATCTGAT
GGAGGCTGACCTGTCTGTGGTCGATAACAACCTGCGCAAGGTGCATTAAA
ATGGTCTACACACTGCTATAGAAGTTGCCTAGCAACTCAGTGAACGTGTT
TTGTTGCTGCTTTACCGCTCACGGGGCTATGTTCAGCCGTCCACGTGACC
GAGGGCTGCTGCTGGGCAGTCTCCTTGCTCGGCAGGCCCCACCACGCTCG
ATTTTCATGTAGGCGTTGCGTAGGTGTCACCACCCCCCGTCTTCCTTGCC
AGAATTTCACTCGCCCCTCCCCGCGTCGGCTTTCTGTTGGCCCGGGTTGT
GATCCTCTAGGGATCTTCCACGCCCGAGACGCGCAACCCTACTGGCATCT
ACCTG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9018:5302..6256-

>mRNA_E_fasciculatus_S2_contig9018.17114.1 ID=mRNA_E_fasciculatus_S2_contig9018.17114.1|Name=mRNA_E_fasciculatus_S2_contig9018.17114.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=246bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9018:5302..6256- (Ectocarpus fasciculatus EfasUO2)
GACATCGAGGGTTATATTTCGCGCACCATCCAGGGTACGGCGGTGGTAGC
CGAATGGGCACCCCCGCTCGTCTCACCCCGGCCGCCACAAAATTTCAGGA
AGAAGCAGCAGACAAAGTCGCGGCTGGATAACGACCAACGCATCTGCAAG
TTGGATCTGATGGAGGCTGACCTGTCTGTGGTCGATAACAACCTGCGCAA
GGGATCTTCCACGCCCGAGACGCGCAACCCTACTGGCATCTACCTG
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