mRNA_E_fasciculatus_S2_contig900.17100.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig900.17100.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRQ9_9PHAE) HSP 1 Score: 928 bits (2398), Expect = 0.000e+0 Identity = 628/866 (72.52%), Postives = 667/866 (77.02%), Query Frame = 1
Query: 1 MGAVDEDESVSSDLMGSIEEVEEENSHSDYSLEFDDDYDGSGHPRGDERHQPGGEKEKEGEGSNGQQNPPSAVLSATGVGSEMQGGHQXXXXXXXXXXXXXXXXXTTRSRVLVDDATTVIADRNNSRGLQVPPKR*SAGHQAHDNETHQQDHMDTTPTKIGPYRSTAAELGAVETKEL-RQERGDREPSLPVQVLTLKDRLDGLLRVGRDGVDSGHHSEHGTFTEALTSVTREHAALRECLGDVERELLTARRKVEQDATSRLQTAQQKRARAEGRRARHFEQLGEARRAAAVAKAEAEAVRARLADGATELRQTRDMLETARSAASAAQDRADXXXXXXXXXXXXXXXXXXXXXXXXXXXXEERRRATVAVRDAAENIELCERKRELEVEAANRAAEARXXXXXXXLKRLPEHQQQLLQAEKDRVVRWEERLTAEAASLQRREEAHKIDMEACRAQARRMEAETRARVEEDASRGRSSLTSARSAFERERGELLQRVAAAESAGQAAIAEA----------ASXXXXXXXXXXXXXXXXXXXXXXXXXXAPQLAALEEKRATLEGFQREAXXXXXXXXXXXXXXXXXXXXXXXXXXAVEVKWKEITTARRAFKQMEKGVVDEAEGLAEQRKALALARVRLHEHQMEMVLQMSEIRKALEVMKRVDSIEDAPARRLALELGTLACDRGQNTARRAESSRDFLANDGGDVRTLVRRECAAYGGNDGRGAEIAAASCEGRTSLGVEVRDR-HQVFLAPCQGTGKLSAQIQITAAAAATTAGCQRRGATDVKRTGAGAYADEAGAREALDKVRSVIASGGKAWGVASGSGSGXXXADEGGGSWEGLSIHGWARRLQAAAIATGAYPLHS 2562
MGA DEDESV SDL SIEE+EEENSHSDYSLEFDDDYDGSGHPRG ++Q GGE EGEGS+GQQN PSAV SATGVGSE QGGHQ TTRS VLVDD +IADRNNS GLQ PPKR S G QA NETHQQD M+T + PY STAAELG +ETKEL +ERGDREPSLPVQVLTLK RLDGLL G DGVDSGH T TEALTSV REHAALRECLGD+ERELLTARRKVEQDA SRLQ AQQKRARAE RR RHFEQLGEARRAAAVAKAEAEA+RARLADGATEL+ RDMLETARSAASAAQDRAD R ++A R + +LCERKRELEV+AA R AEAR +KRLPEHQQQLLQAE+DRVVRWEERL AEAASLQRREEAHKIDMEACRAQ RRMEAETRARVEEDASR RS+LT+A+SAFERERGELL+RVAAAESAGQAAIAE XXXXXXXXXXXXXXXXX P+ A + +R + R XXXXXXXXXXXXXXXXXXXXXXXXX EVKWKEITTARRA KQME+GVV+EAEGLAEQRKALALARVRLHEHQMEMVLQMSEIRKALEVMKRVDSIEDAPARRLALELGTLACDRGQ+ ARRAE+SRDFLA DG DV TL RRE A +GG+DGRG +I AA CEGR LGVEVRDR HQV LAPC+ T + AAA A+TA CQ RGATDV R GAGAYADEAGAREALDKVRSVIASGGK W VASGSGSG GSWEGL +HGWARRLQAAAIATGAY LH+
Sbjct: 1 MGADDEDESVLSDLRESIEEIEEENSHSDYSLEFDDDYDGSGHPRGAGQYQRGGE---EGEGSHGQQNSPSAVWSATGVGSEKQGGHQHQQRQRLQEGRDQER--TTRSHVLVDDTANIIADRNNSGGLQFPPKR-STGRQADGNETHQQDCMETVQARNEPYSSTAAELGTMETKELPSEERGDREPSLPVQVLTLKARLDGLLLGGHDGVDSGHQK---TVTEALTSVKREHAALRECLGDIERELLTARRKVEQDAASRLQAAQQKRARAEARRVRHFEQLGEARRAAAVAKAEAEALRARLADGATELQHMRDMLETARSAASAAQDRADQCQKEAAVAEAGFCSKLSRTHDSRLCKSALLR--SLAFRLPLDGAKLCERKRELEVDAATRVAEARERAAEEQMKRLPEHQQQLLQAERDRVVRWEERLAAEAASLQRREEAHKIDMEACRAQIRRMEAETRARVEEDASRERSTLTNAKSAFERERGELLRRVAAAESAGQAAIAEGFEFRRGVADGRGERXXXXXXXXXXXXXXXXXDARAAACCPRRRASDARRVST----RRPRXXXXXXXXXXXXXXXXXXXXXXXXXXXEVKWKEITTARRAIKQMERGVVNEAEGLAEQRKALALARVRLHEHQMEMVLQMSEIRKALEVMKRVDSIEDAPARRLALELGTLACDRGQSAARRAENSRDFLAADGDDVGTLARREWAVHGGSDGRGFQITAAPCEGRGGLGVEVRDRSHQVLLAPCEET---AGTTTAAAAATASTATCQGRGATDVMRMGAGAYADEAGAREALDKVRSVIASGGKEWEVASGSGSG--------GSWEGLPVHGWARRLQAAAIATGAYRLHN 840
BLAST of mRNA_E_fasciculatus_S2_contig900.17100.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEG2_ECTSI) HSP 1 Score: 734 bits (1895), Expect = 9.130e-257 Identity = 470/704 (66.76%), Postives = 492/704 (69.89%), Query Frame = 1
Query: 457 MDTTPTKIGPYRSTAAELGAVETKEL-RQERGDREPSLPVQVLTLKDRLDGLLRVGRDGVDSGHHSEHGTFTEALTSVTREHAALRECLGDVERELLTARRKVEQDATSRLQTAQQKRARAEGRRARHFEQLGEARRAAAVAKAEAEAVRARLADGATELRQTRDMLETARSAASAAQDRADXXXXXXXXXXXXXXXXXXXXXXXXXXXXEERRRATVAVRDAAENIELCERKRELEVEAANRAAEARXXXXXXXLKRLPEHQQQLLQAEKDRVVRWEERLTAEAASLQRREEAHKIDMEACRAQARRMEAETRARVEEDASRGRSSLTSARSAFERERGELLQRVAAAESAGQAAIAEAASXXXXXXXXXXXXXXXXXXXXXXXXXXAPQLAALEEKRATLEGFQREAXXXXXXXXXXXXXXXXXXXXXXXXXXAVEVKWKEITTARRAFKQMEKGVVDEAEGLAEQRKALALARVRLHEHQMEMVLQMSEIRKALEVMKRVDSIEDAPARRLALELGTLACDRGQNTARRAESSRDFLANDGGDVRTLVRRECAAYGGNDGRGAEIAAASCEGRTSLGVEVRDR-HQVFLAPCQGTGKLSAQIQITAAAAATTAGCQRRGATDVKRTGAGAYADEAGAREALDKVRSVIASGGKAWGVASGSGSGXXXADEGGGSWEGLSIHGWARRLQAAAIATGAYPLHS 2562
M TT T+ PY STAAELG +ETKEL R+ERGDR PSLPVQVLTLK RLDGLLR G DGVDSGHH T TEALTSVTREHAALRECLGDVERELLTARRKVEQDA SRLQ AQQKRARAE RR RHFEQLGEAR+ A VAK EAEA+RAR+ADGATELR RDMLETARSAASAAQDRAD ++ ATVA ELCERKRELEV+AA RAAEAR LKRLPEHQQQLLQAEKDRVVRWEERL AEAASLQRREEAHKIDMEACRAQ RRMEAETRARVEEDASR RS+LT+ARSAFERERGELL+RVAAAESAGQAAIAE MEKGVVDEAEGLAEQRKAL LARVRLHEHQMEMVLQMSEIRKALEVMKRVDSIEDAPARRLALELGTLACDRGQ+ ARRAE+S DFLA DGGDV TL RRE A YG +DGRG +I AASCEGR GVEVRDR HQ+FL PC+ TG RGATDV R GAGAYADEAGAREALDKVRS+IASGGK W VASGSGSGXXXADEGGGSWEGLS+HGWA+RLQAAAIATGAY LH+
Sbjct: 1 MITTQTRNEPYSSTAAELGTMETKELLREERGDRGPSLPVQVLTLKARLDGLLRAGHDGVDSGHHL---TVTEALTSVTREHAALRECLGDVERELLTARRKVEQDAASRLQAAQQKRARAEARRVRHFEQLGEARKTAVVAKTEAEALRARVADGATELRHARDMLETARSAASAAQDRADQC----------------------------QKEATVA--------ELCERKRELEVDAATRAAEARERAAEEQLKRLPEHQQQLLQAEKDRVVRWEERLAAEAASLQRREEAHKIDMEACRAQVRRMEAETRARVEEDASRERSTLTNARSAFERERGELLRRVAAAESAGQAAIAE----------------------------------------------------------------------------------------------MEKGVVDEAEGLAEQRKALVLARVRLHEHQMEMVLQMSEIRKALEVMKRVDSIEDAPARRLALELGTLACDRGQSAARRAENSGDFLAADGGDVGTLARRERAVYGSSDGRGIQITAASCEGRGGQGVEVRDRSHQLFLTPCEETG---------------------RGATDVMRMGAGAYADEAGAREALDKVRSMIASGGKGWEVASGSGSGXXXADEGGGSWEGLSVHGWAQRLQAAAIATGAYRLHN 550 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig900.17100.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig900.17100.1 >prot_E_fasciculatus_S2_contig900.17100.1 ID=prot_E_fasciculatus_S2_contig900.17100.1|Name=mRNA_E_fasciculatus_S2_contig900.17100.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=703bp MDTTPTKIGPYRSTAAELGAVETKELRQERGDREPSLPVQVLTLKDRLDGback to top mRNA from alignment at E_fasciculatus_S2_contig900:8936..18260- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig900.17100.1 ID=mRNA_E_fasciculatus_S2_contig900.17100.1|Name=mRNA_E_fasciculatus_S2_contig900.17100.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=9325bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig900:8936..18260- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig900:8936..18260- >mRNA_E_fasciculatus_S2_contig900.17100.1 ID=mRNA_E_fasciculatus_S2_contig900.17100.1|Name=mRNA_E_fasciculatus_S2_contig900.17100.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=2109bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig900:8936..18260- (Ectocarpus fasciculatus EfasUO2)back to top |