mRNA_E_fasciculatus_S2_contig8997.17083.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8997.17083.1
Unique NamemRNA_E_fasciculatus_S2_contig8997.17083.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8997.17083.1 vs.
Match: Cyclic (nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5H5_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 6.220e-17
Identity = 71/102 (69.61%), Postives = 73/102 (71.57%), Query Frame = 1 
Query:    1 SGAWDEALKDAAADAAXXXXXXXXXXXXXXXXXSTAKEADRTGLLGTTSVVLPGNVDVHGDDDLVTLATPPADDDCDSSDDERRGSLERGAVQTSDWVGEED 306
            SGAWD ALKD      XXXXXXXXXXXXXXXXX TA E DR    GTTSV LPGN DVHGDDDL T ATP  D+D  SSD ERRG  ERG VQT D  GEE+
Sbjct:  325 SGAWDAALKDXXXXXXXXXXXXXXXXXXXXXXXXTAIETDR----GTTSVALPGNADVHGDDDLGTPATPLVDEDWGSSDAERRGGSERGTVQTLDQSGEEE 422
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8997.17083.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Cyclic6.220e-1769.61nucleotide-binding domain-containing protein n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8997contigE_fasciculatus_S2_contig8997:629..938 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size310
Hectar predicted targeting categoryother localisation
Exons1
Cds size309
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842551.8968983-CDS-E_fasciculatus_S2_contig8997:628..9371696842551.8968983-CDS-E_fasciculatus_S2_contig8997:628..937Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8997 629..937 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8997.17083.1prot_E_fasciculatus_S2_contig8997.17083.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8997 629..937 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8997.17083.1

>prot_E_fasciculatus_S2_contig8997.17083.1 ID=prot_E_fasciculatus_S2_contig8997.17083.1|Name=mRNA_E_fasciculatus_S2_contig8997.17083.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=103bp
SGAWDEALKDAAADAAAEGTGAAAATAAAVGAASTAKEADRTGLLGTTSV
VLPGNVDVHGDDDLVTLATPPADDDCDSSDDERRGSLERGAVQTSDWVGE
EDE
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mRNA from alignment at E_fasciculatus_S2_contig8997:629..938+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8997.17083.1 ID=mRNA_E_fasciculatus_S2_contig8997.17083.1|Name=mRNA_E_fasciculatus_S2_contig8997.17083.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=310bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8997:629..938+ (Ectocarpus fasciculatus EfasUO2)
AGCGGTGCTTGGGACGAGGCACTGAAGGATGCGGCGGCAGACGCGGCGGC
GGAAGGGACTGGCGCGGCAGCAGCAACAGCAGCAGCAGTAGGTGCGGCAT
CAACAGCGAAAGAGGCAGACAGAACAGGCCTCCTTGGCACCACGTCTGTC
GTCCTGCCCGGAAACGTAGACGTACACGGCGATGACGACCTCGTAACGCT
AGCCACGCCGCCAGCAGACGACGACTGCGACTCATCGGATGATGAGAGGA
GAGGGAGCTTGGAGCGGGGTGCGGTGCAGACGTCAGACTGGGTAGGAGAA
GAGGACGAGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8997:629..938+

>mRNA_E_fasciculatus_S2_contig8997.17083.1 ID=mRNA_E_fasciculatus_S2_contig8997.17083.1|Name=mRNA_E_fasciculatus_S2_contig8997.17083.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=309bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8997:629..938+ (Ectocarpus fasciculatus EfasUO2)
AGCGGTGCTTGGGACGAGGCACTGAAGGATGCGGCGGCAGACGCGGCGGC
GGAAGGGACTGGCGCGGCAGCAGCAACAGCAGCAGCAGTAGGTGCGGCAT
CAACAGCGAAAGAGGCAGACAGAACAGGCCTCCTTGGCACCACGTCTGTC
GTCCTGCCCGGAAACGTAGACGTACACGGCGATGACGACCTCGTAACGCT
AGCCACGCCGCCAGCAGACGACGACTGCGACTCATCGGATGATGAGAGGA
GAGGGAGCTTGGAGCGGGGTGCGGTGCAGACGTCAGACTGGGTAGGAGAA
GAGGACGAG
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