mRNA_E_fasciculatus_S2_contig8982.17074.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8982.17074.1
Unique NamemRNA_E_fasciculatus_S2_contig8982.17074.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8982.17074.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLA3_ECTSI)

HSP 1 Score: 362 bits (928), Expect = 1.360e-122
Identity = 183/188 (97.34%), Postives = 187/188 (99.47%), Query Frame = 1 
Query:    1 MVLWVPVFVAAAVSVCVGVLFPRAPTWQIVEMKYRGLSVNIASIGVDMKIDMGLEVFNPNYVPATLKGIVMTMFHEDLGGEEAPFGVVTFAGENAARLPARGSAVVQAQMEVVSLPTSMAMGIAKDVADGGVIVSRASAIMDVKVMGGDILIEADCVQHMQADVFPIKINEVDCKYYYKNVRVPVLPP 564
            MVLWVPVFVAAAVSVCVGV+FPRAPTWQIV+MKYRGLS+NIASIGVDMKIDMGLEVFNPNYVPATLKGIVMTMFHEDLGGEEAPFGVVTFAGENAARLPARGSAVVQAQMEVVSLPTSMAMGIAKDVADGGVIVSRASA MDVKVMGGDILIEADCVQHMQADVFPIKINE+DCKYYYKNVRVPVLPP
Sbjct:    1 MVLWVPVFVAAAVSVCVGVMFPRAPTWQIVDMKYRGLSMNIASIGVDMKIDMGLEVFNPNYVPATLKGIVMTMFHEDLGGEEAPFGVVTFAGENAARLPARGSAVVQAQMEVVSLPTSMAMGIAKDVADGGVIVSRASAFMDVKVMGGDILIEADCVQHMQADVFPIKINEIDCKYYYKNVRVPVLPP 188
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BLAST of mRNA_E_fasciculatus_S2_contig8982.17074.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLA5_9STRA)

HSP 1 Score: 127 bits (318), Expect = 4.100e-31
Identity = 73/178 (41.01%), Postives = 109/178 (61.24%), Query Frame = 1 
Query:   37 VSVCVGVLFPRAPTWQIVEMKYRGLSVNIASIGVDMKIDMGLEVFNPNYVPATLKGIVMTMFHEDLGGEEAPFGVVTFAGENAARLPARGSAVVQAQMEVVSLPTSMAMGIAKDVA-DGGVIVSRASAIMDVKVMGGDIL--IEADCVQHMQADVFPIKINEVDCKYYYKNVRVPVLP 561
            V+V +   FPRAPTWQI   KY  +S N     +  ++++ LE++N N + A +  I + + H D  G E PF  +  AG+ A  LPARGS      M + +L  +MA  +A+D A +GG +V+RA + MDV V+GG     +EA+CVQH++AD FP+++  +DC+YY    RVP+LP
Sbjct:   12 VAVLIANFFPRAPTWQIRGQKYTSVSFNY-DFTMAAEMELELELYNDNLLSAHVNAIELEVLHRDAWGVERPFARIHVAGDFA--LPARGSVRRAGTMVMDALAPAMAGALARDAAANGGTLVTRAHSTMDVSVLGGAARARLEAECVQHLRADAFPMEVTYIDCRYYMGRHRVPMLP 186
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8982.17074.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.360e-12297.34protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLA3... [more]
Uncharacterized4.100e-3141.01protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8982contigE_fasciculatus_S2_contig8982:415..6122 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1230
Hectar predicted targeting categorysignal peptide
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-15_004890.1
Cds size567
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8982.17074.1prot_E_fasciculatus_S2_contig8982.17074.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8982 1078..6122 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842551.0921648-UTR-E_fasciculatus_S2_contig8982:414..10771696842551.0921648-UTR-E_fasciculatus_S2_contig8982:414..1077Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8982 415..1077 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842551.1049843-CDS-E_fasciculatus_S2_contig8982:1077..12011696842551.1049843-CDS-E_fasciculatus_S2_contig8982:1077..1201Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8982 1078..1201 -
1696842551.1166637-CDS-E_fasciculatus_S2_contig8982:1816..19321696842551.1166637-CDS-E_fasciculatus_S2_contig8982:1816..1932Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8982 1817..1932 -
1696842551.127732-CDS-E_fasciculatus_S2_contig8982:2723..28791696842551.127732-CDS-E_fasciculatus_S2_contig8982:2723..2879Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8982 2724..2879 -
1696842551.1383948-CDS-E_fasciculatus_S2_contig8982:3239..33261696842551.1383948-CDS-E_fasciculatus_S2_contig8982:3239..3326Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8982 3240..3326 -
1696842551.1481745-CDS-E_fasciculatus_S2_contig8982:6038..61221696842551.1481745-CDS-E_fasciculatus_S2_contig8982:6038..6122Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8982 6039..6122 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8982.17074.1

>prot_E_fasciculatus_S2_contig8982.17074.1 ID=prot_E_fasciculatus_S2_contig8982.17074.1|Name=mRNA_E_fasciculatus_S2_contig8982.17074.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=189bp
MVLWVPVFVAAAVSVCVGVLFPRAPTWQIVEMKYRGLSVNIASIGVDMKI
DMGLEVFNPNYVPATLKGIVMTMFHEDLGGEEAPFGVVTFAGENAARLPA
RGSAVVQAQMEVVSLPTSMAMGIAKDVADGGVIVSRASAIMDVKVMGGDI
LIEADCVQHMQADVFPIKINEVDCKYYYKNVRVPVLPP*
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mRNA from alignment at E_fasciculatus_S2_contig8982:415..6122-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8982.17074.1 ID=mRNA_E_fasciculatus_S2_contig8982.17074.1|Name=mRNA_E_fasciculatus_S2_contig8982.17074.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5708bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8982:415..6122- (Ectocarpus fasciculatus EfasUO2)
ATGGTGCTCTGGGTGCCGGTTTTCGTGGCGGCGGCAGTGTCTGTGTGTGT
CGGCGTCCTGTTCCCTCGAGCACCAACATGGCAGGTATGCTAATTGCATC
ACACACAGCAGGGGGAGGACAGCGACAACAGCAGAGTAGACTGCAGGTGC
TGTGCACCCTTTTTTTGTAGTGTACACGTGTACACTGCTGCCACTATCTA
CACACCTATGCATTGGACCCGGACAGGCAATGGGCCTTTATAGGAGGGAG
TTCGAAATATGTTACAACAGCAGTCGATCATACCAGTGTACGGTGCGGTC
ATCGACTACGTACATGTACCACATAGTCTACATACATTGTAGCAGTGGGG
TCTTGACGCTTCCCGCATTGCCACGCGGGCATTGACTATTCTTATGCAGC
TGTTCTTATGTACTTAAAAATAACATGCGGTCCAGTTGGAGCATCTACAG
CCCACCCTGACTTTCGAACCAGCTCGTGGGTGACAAACTTGCCACCCTGT
ACAATACAATACCAGCATCCAGGATCCACAACTCTTGTGTAATCGGCAAT
CGGTCCAGTGTCCTGTGCATACCTTACAATTGTAGGTGACGTGACGTAAA
ATACCCCACCCCCTACTGCTGTAGTACCTAGTTGTACCTCCTGCTGTAGT
ACCTAGTACAGTAGTATATACCGCTTTTCATAGCTCGAGCAACAGCACTC
GAAAGCAGCAGCAGCAGTGTCGGGGGCGATACTGTACTGATATTCACTGC
TGTAGTCTAGTCATACTGTACCGATGGAACCGTGCCGTTGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGTTTGATTGTGGCATCCTCTTCGGCATGGAGTC
CTCGAGCTCTATGCTTTATGAAAATCGGTGCGACCTACTGCTGCTGTGGG
ACAATTATTCAATCGGGTGCAAGCTCTCGGCAGCCGTTACTACATGATGC
ATTGCCTGCCGAGAAGCAACCATCTTCCCTCGCATGTTGATGGTTTCTTT
CTGGGTGAAGACAATACTAATACTGTTGTAGCAGCGCCGGAAGTTGTCAG
TGCACTCCACTCACTCTTTGGTTGCTCTTGCAATAGCAGCAGGAGGAAGC
ATCAGCAGAGCGAAGGGGCCTAGTCACTGCTGCTCTACTTTGTACACACT
GGCCCACAATACGTTGATTCGTGCAACAGTTGCACCCAATACAGATAGCA
CTCTCACTTAAGTAAGGCCTGGCAGCTGCAGTACAGTAAGAACTGAACGC
TAAGCATTTTTCGAAACAAACAACTTGGGCATCATTGTATCATTGCATAA
TTGCATCGTTGCCGAGTGTGAGCCCGGTCAAGGATTATACTAGACACTAC
ACTAATGTAATAGAATGAATGTAATGTATACTACACCCTTTCTTGCGATC
GACCAATTGCAGCCCACGAGGGAAAACCTTTCTTGCGATCGACCAATTGC
AGCCCACGAGGGAAAACCTTTCTTGCGATCGACCAATTGCAGCCCACGAG
GGAAAGAGGGAAAACGAGAACCCCAGCCTCGGCCACTACTAGCAATAGAG
GCTACAAGTAGAGGTTCTCAACTGCGGGCGCTGTCTGCACAAGCTACGTG
TAGGATTCAACGACACCATCCACGTCCGAGAACGGCAGTACAGTGTTGTT
TTGTATTGTATTGTATGGTATGGTGACAACGATTGCACGTAGTACTGCTG
CATCGTATTGTCATTTCGCTTCGCGTACCCGGGCACGCTTACATAACGTG
TCCAGGGTCTATTAGAGGCGGCCTTGAACCACTTATGAGTGCCACCAGGC
ACACATACCATCTACTGCGTGTGGCGTAGCTTCTACTAGTAGTCTACCCG
CACAACGAGAGCCACGGGCAGGTTCCAGCCACATGTGGCACCCTCGCCGC
TTGTGCACCACCCCCATACCTGGAGACAGCACGCACGTGCTGTGCTGGAC
GAGGTCTACTTGCTGTTGAAGTGGTGGAATCAGCAAGGGTAGCCTGTCAT
ATCGAATCCCCGACGCACATGCCTGCATGTTGGCTTGTTGGCTTGCCGAG
TCGACCTATGACACCTGGGTACTTCTCGACATCCGTAACATGTTCCTAGC
ACAATCCCTCAAGATTTGATTTGAGGAAGAGCTCAACACAACCGCGAATG
CCTTTTGTTTGGAACCCCCCCCTTTTATAGCGTATTTGTACATGTAGCGT
ATATGGCTCTCTCGGCGTCGTGATGTGTGTCCAGAGCCGCTATTTTAAAG
CTGCTGTATACCCGGGTGTAGGACCGTGCTTATGATGTGCAGAAATGGAC
ATGAAAGGGCGGCATTTCTTCGCAGTTGTGTACCCTTTTTTTTTTTTTCT
TTACTTGTGACAAGGCCAGCCGATCACATTCGACAGCTCCGGTCTATCTC
GCGGTGTTCGTGCGCACTGCTGTACATGAAAAATCGCCTGTGGTTAGGTT
GTAGAGACCCTCAACTGAATCTATTGTACTGCTGTAGCGGCATTTCCTCA
ACTCCCGCTTGCCTACTTCGATGCAAGCCAACATTCCTTTCTTTGAGCTG
CTCGTTTTCCGCATATTCTTCTGCCTAGTTGTGGCCTGAGGAACAGCGAA
AAGGAACACGATGTATGTGTAGTCTCTCAACGACAGCCCACTCCTCATCA
GCTCATCAGGCTGGGTCCCTATCCGCATCGTGTTCCTTCGACCTGTCAAG
GCCACCTTCTTCGAGCACAGCCATACCGGTTCCTCCTATACGCGTCAACA
TCGACTGCTTCGTTTCTTGTGCGCAATTGCCGTGTGTCCTGCGCAGATCG
TGGAGATGAAGTATCGAGGCCTTTCCGTGAATATTGCGAGCATTGGGGTG
GACATGAAGATCGACATGGGCCTAGAAGTGTTTGTGAGTCACTCACACTC
ACCCTGTTGTCGCAGCAGTCCAAGGAGCGAGAAACATGTTCTGTTGAGAG
TCATTCTACATGGTCGCTTTCAAGCTTGCATGTTTGCCTCGCAGAAAAAT
CAAGTATTCCGCCGGCGTATGACGAGACCTTGGTATGACATTGCACACAG
CAGCTAATATCCGATACAGGCCGTCTGTTCTGGTGTGTCGATTTATTCCA
TAGCGCCACGAAGAAGGCGTTCTATTAATAGATGCATACGCATGCCTAAA
AATAGCAAACCACGACTGGCATCAGAGAACCGTGAACGTGATATGTACAC
AACACTCCAACACTCCCTTGCCACCCTCCCGTGTTGGTGGCAGAACCCGA
ACTACGTACCTGCCACGCTGAAAGGCATCGTCATGACCATGTTCCACGAA
GACCTCGGGGGGGAGGAGGCGCCGTTCGGGGTGGTAACCTTCGCCGGCGA
AAATGCGGCGAGACTACCTGCCCGGGGCTCCGCGGTAGTGCAGGCACAGG
TACTACTACTACTGAATATGCACCGCGGCTGTGACCCCACTGCTCTTTAT
ACGGTACTCCCATCAACGCGGTTTTGGACTTTTTTTTTTTTTCAAGCACG
AACCCCAGCCCGAGCCTTGGTCGCTACGATCATCGATTGCCTCCCCCTGT
TTGGTTCGCGCGGTGATCTGTGTCTACTTGTCTGCTTTTGTATATCTTAA
CTGCATGCGGGAGGGAAGCAGAGGGGCTACTGAACAATACGAAAATGAGG
ATGTTGTCAATGCGCACTGTTATGTGGCGCCACCCAACACCCCGCACTAT
CAAGCGTGCGCATGCGGAAGCTTATGTCGACCCCCTTTGTAGCCCCTGTC
TCTCCACTCGCCCAGCTGCTGGTGTTGTTGAGGTTGGTCTATTTCGGTAC
TGTCGAAGAGCACGGTTTTGTTGGTTGGAGACGACGGACTGCTCCACCAC
ATAGCAAACCTAGAGTGCACAAATCCAGGATGAAAAATATAGAAACTTGG
CTACAAGAACAGGGGCACAGCTTACTATCCTACACCACCGTAGTGCAGTA
TAGGTATAGACTATTTGTAGGTATTGGGTTACTCGGCCGAGAAAATACGA
AGCAAGCCTTTCGCAAAAGGAGATGTTCTTGAATGGTGGCACGTACTGCA
TGACGATTCACGTACCAGCAGGCACAATCGGTAGAGTAGTCCTTCTCGAT
CCCCCCCCTCGCCCTCCTCTTACGATCAAACCTGGTCCCCGTCTTGTATT
TTTTTGTTGTTGTCTGAATTGTACTTCTATTGTATTCTAGATGGAAGTGG
TGTCCCTACCGACGAGCATGGCGATGGGCATCGCGAAGGATGTAGCTGAC
GGAGGCGTCATTGTCAGCCGGGCATCGGCCATCATGGACGTGAAGGTCAT
GGGAGGGTGAGAGAAAACGACCGAGGTTCAATTAAGTAGCAATTCGCACC
TCTAGGGATTTGGGAGGTGTGATGCATGGTTGTTGGGTTGTTGGCGACGC
CACACATTGTTCGTGTCGTGTCGTGTCGGGCACGAACCGAAGAAGTCAGT
CTCCGTGTCCATTTTTTGTTTCGGAACTTGAGCTTCTTTCTTCCTCCTTC
CTTCTGGTGTTCATTTTCCGAAGATGAGAAGCAGATGATCTCTTCCCACT
TCTGCTTTCCTTGGACTAGCACCCATCAGGGTTATTATGGTAGATCGTTT
TTTCATGTGTTCTTTTGAAAAGTATTGTTTCAGAAAATAGACGTACAATC
TAATTTATCGCAGTCGGCGGGGATGTGGTGAATCTTTGCAGTTGACCTAT
TTTTTTGTCATTTGTGAAGGGCTTTGAGGTTGGCGGTGGAAACGCTCTCA
ACTTGGCTGCCGCCTTTTCAGCAACCGAGTTCCGAGAACAACATGAGGAT
AGTGGGACTGTTCTACATAGCACGTCTTTGAACGTGCGACAGCAAGTTGT
GACCTTCGTCGTTCGCCGTTGTTCCGCTTCTGCGAACAATCGATACAATC
GATACCACTCTGCCGTGGCAGGGATATCTTGATCGAGGCGGACTGCGTGC
AGCACATGCAAGCAGACGTGTTTCCCATCAAGATCAACGAGGTCGACTGC
AAGTACTACTACAAGAACGTTAGGGTGCCGGTGCTGCCTCCATAGCGGGG
TATCGCTTCGTCGCCACGCCAGGGAGAGAGCAACGAGAGTGCTGGCAGTG
CTGGCAAGGTCCTCAATTTCTGACAAGGAGATGCGGGTCGATGTCAAGGG
TGTGCCTCAGCTCGGCTCCAGGCAGTTGTATCCCATCCCATCCCATCCCA
TGCAAGGTTCGGAAAACTCTCCTGGGGGTCTTTCCAGAACTTTTCTTACA
ACATTCGCAGCCCACGGGTGGTTGAAAGGTCATGCGCGGGAGGGATGTCC
AAGTTGAGCAAGCCGGAGGGTAAGTTTGTTTTGCCATTGCAGTGAGTGTA
CAGAACAGCAGTTGGCGATAATATACGATTTTTCGATGTGGTGTAAGGAG
TGTAAGGAGTTTGTTGACGCTGACGTTTCTTTTTGGTTCTCACGTCTACA
GGGCGTGCATTCGAAGGGTGGTCATTGCCATGATGCGGTGCCATGGGCCC
TTGTACCATCCTGCTGAGCCAGGTGGGTCACCTCTTGGTCGACCTTGTGC
AGGAAAACAGGTATCGCAACAATGTAGTACATGTAGTAGCGTGAGCTGTT
GTGTCCGTGGAGTTGCGTATAGGTGGTCTGCTGACTTGCGAGAACCGTTT
TGTGGGGAAGGGAAAGACGTTATATGTGGCACACTGCCGTTTGGTTCTTG
GTATGGTG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8982:415..6122-

>mRNA_E_fasciculatus_S2_contig8982.17074.1 ID=mRNA_E_fasciculatus_S2_contig8982.17074.1|Name=mRNA_E_fasciculatus_S2_contig8982.17074.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=567bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8982:415..6122- (Ectocarpus fasciculatus EfasUO2)
ATGGTGCTCTGGGTGCCGGTTTTCGTGGCGGCGGCAGTGTCTGTGTGTGT
CGGCGTCCTGTTCCCTCGAGCACCAACATGGCAGATCGTGGAGATGAAGT
ATCGAGGCCTTTCCGTGAATATTGCGAGCATTGGGGTGGACATGAAGATC
GACATGGGCCTAGAAGTGTTTAACCCGAACTACGTACCTGCCACGCTGAA
AGGCATCGTCATGACCATGTTCCACGAAGACCTCGGGGGGGAGGAGGCGC
CGTTCGGGGTGGTAACCTTCGCCGGCGAAAATGCGGCGAGACTACCTGCC
CGGGGCTCCGCGGTAGTGCAGGCACAGATGGAAGTGGTGTCCCTACCGAC
GAGCATGGCGATGGGCATCGCGAAGGATGTAGCTGACGGAGGCGTCATTG
TCAGCCGGGCATCGGCCATCATGGACGTGAAGGTCATGGGAGGGGATATC
TTGATCGAGGCGGACTGCGTGCAGCACATGCAAGCAGACGTGTTTCCCAT
CAAGATCAACGAGGTCGACTGCAAGTACTACTACAAGAACGTTAGGGTGC
CGGTGCTGCCTCCATAG
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