mRNA_E_fasciculatus_S2_contig896.17050.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig896.17050.1
Unique NamemRNA_E_fasciculatus_S2_contig896.17050.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig896.17050.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K763_9PHAE)

HSP 1 Score: 315 bits (806), Expect = 6.140e-104
Identity = 210/322 (65.22%), Postives = 227/322 (70.50%), Query Frame = 1 
Query:    1 MSSRRETGG--GGRQLAAALLASVVLNACFDVAAGFSSGIPCPADLFSCLGNDECSSCLDALQESDLAVLDGDFELCGDLYADVCTTAQAVDCNTDNEELVEFLTCVADDSYGCGDFTTCADFLPAEEXXXXXXXXXXXPSPLVANAKTASPGTXXXXXXXXXXXXXXXXXXPAALVPTPXXXFXXXXXXXXXXXXXXXX-APSPGSRGGL-FSPTAAPTGGGNQQGLGTAFPTSASVFEGFMDTLAPSAAPTGPDGG-LRGGVAFSDSPTAAPTIGFEDALDGASAGSALAVASPVAVVAVAVVFFAATALV-DFSPYHLA 948
            MSSR+ TGG  GGRQLA ALLA VVLNACFD+  GFSSGIPCP DLFSCLG+DECSSCLDALQE+DL ++ GDFELC DLYA VC  A+A+ CNTDNEELVEFLTCVADDS+GCGDFTTCADF PAE            P P V  +  A+                      AA VP P   F  X     XXXXXXXX APS GSRGGL FSPTAAPTGGGN +G  TA PT AS FEGFMDTLAPSA         LRGG  FSD+PTA PT+GFED LDG SAGSALAVA+PV VVA AVVFFAATAL+ DFS Y+LA
Sbjct:    1 MSSRQGTGGTGGGRQLATALLALVVLNACFDLGTGFSSGIPCPVDLFSCLGDDECSSCLDALQENDLPLIGGDFELCDDLYASVCAAAEAIGCNTDNEELVEFLTCVADDSFGCGDFTTCADF-PAE---------VETPPPTVPPSXXAT--------------------TTAAAVPXPAPSFPFXATAAPXXXXXXXXSAPSSGSRGGLPFSPTAAPTGGGNAKGRDTASPTPASSFEGFMDTLAPSAXXXXXXXXXLRGGDVFSDTPTAVPTVGFEDELDGVSAGSALAVATPV-VVAAAVVFFAATALLADFSQYNLA 291
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BLAST of mRNA_E_fasciculatus_S2_contig896.17050.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCK8_ECTSI)

HSP 1 Score: 300 bits (769), Expect = 5.870e-98
Identity = 218/324 (67.28%), Postives = 230/324 (70.99%), Query Frame = 1 
Query:    1 MSSRRETGGG----GRQLAAALLASVVLNACFDVAAGFSSGIPCPADLFSCLGNDECSSCLDALQESDLAVLDGDFELCGDLYADVCTTAQAVDCNTDNEELVEFLTCVADDSYGCGDFTTCADFLPAEEXXXXXXXXXXXPSPLVANAKTASPGTXXXXXXXXXXXXXXXXXXPAALVPTPXXXFXXXXXXXXXXXXXXXXAPSPGSRGG-LFSPTAAPTGGGNQQGLGTAFPTSASVFEGFMDTLAPSAAPTGPDGGLRGGVAFSDSPTAAPTIGFEDALDGASAGSALAVASPVAVVAVAVVFF-AATALV-DFSPYHLAA 951
            MSSR+ETG       RQLA ALLA V LNACFDV AGFSSGIPCP DLFSCLG+DECSSCLDALQE+DL +L GDFELCGDLYA VC  A+AV CNTDNE+LVEFLTCVADDSYGCGDFTTCADF PAEEXXXXXXXXXXX               XXXXXXX            A   PTP            XXXXXXXX      RGG LFSP       GN +GL TA+PTSASVFEGFMDTLAPSAAPTGPDGGL GG  FS +PTAAPT+GFEDALDG SAGSALAVA+PV V         AATAL+ DFSPY LAA
Sbjct:    1 MSSRQETGXXXXXXSRQLATALLALVALNACFDVGAGFSSGIPCPVDLFSCLGDDECSSCLDALQENDLPILGGDFELCGDLYAGVCAAAEAVGCNTDNEDLVEFLTCVADDSYGCGDFTTCADF-PAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAPTAV-----AVPTPTPSSFPFPETAAPTXXXXXXXXXXXXXXRGGQLFSPXXXXXXXGNGKGLDTAYPTSASVFEGFMDTLAPSAAPTGPDGGLWGGAVFSGTPTAAPTVGFEDALDGVSAGSALAVATPVIVXXXXXXXXXAATALLADFSPYTLAA 318
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig896.17050.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMI0_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 1.910e-10
Identity = 36/86 (41.86%), Postives = 51/86 (59.30%), Query Frame = 1 
Query:  103 SSGIPCPADLFSCLGNDECSSCLDALQESDLAVLDGDFELCGDLYADVCTTAQAVDCNTDNEELVEFLTCVADDSYGCGDFTTCAD 360
            +S + CP++  SCL +D+CSSCL AL E+    ++  F  C  L+A VCT A    C+  N  L +F  CVAD+ + C  F +CAD
Sbjct:   32 NSAVSCPSETLSCLADDDCSSCLTALDETS-DTINPVFADCNVLFASVCTFAANNGCDLTNPLLEDFAACVADEEFSCPGFVSCAD 116
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig896.17050.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized6.140e-10465.22protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized5.870e-9867.28protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.910e-1041.86protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig896contigE_fasciculatus_S2_contig896:4853..5806 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size954
Hectar predicted targeting categorysignal peptide
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-03_002510.1
Cds size954
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842548.923331-CDS-E_fasciculatus_S2_contig896:4852..58061696842548.923331-CDS-E_fasciculatus_S2_contig896:4852..5806Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig896 4853..5806 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig896.17050.1prot_E_fasciculatus_S2_contig896.17050.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig896 4853..5806 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig896.17050.1

>prot_E_fasciculatus_S2_contig896.17050.1 ID=prot_E_fasciculatus_S2_contig896.17050.1|Name=mRNA_E_fasciculatus_S2_contig896.17050.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=318bp
MSSRRETGGGGRQLAAALLASVVLNACFDVAAGFSSGIPCPADLFSCLGN
DECSSCLDALQESDLAVLDGDFELCGDLYADVCTTAQAVDCNTDNEELVE
FLTCVADDSYGCGDFTTCADFLPAEEEEEETPPPTATPSPLVANAKTASP
GTAAPSGGGGGGDDDATTTAPAALVPTPTPSFPLPETTAPTAVATATSAP
SPGSRGGLFSPTAAPTGGGNQQGLGTAFPTSASVFEGFMDTLAPSAAPTG
PDGGLRGGVAFSDSPTAAPTIGFEDALDGASAGSALAVASPVAVVAVAVV
FFAATALVDFSPYHLAA*
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mRNA from alignment at E_fasciculatus_S2_contig896:4853..5806-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig896.17050.1 ID=mRNA_E_fasciculatus_S2_contig896.17050.1|Name=mRNA_E_fasciculatus_S2_contig896.17050.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=954bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig896:4853..5806- (Ectocarpus fasciculatus EfasUO2)
ATGAGCTCTAGGCGGGAGACCGGCGGCGGCGGCAGGCAGCTCGCGGCGGC
GCTGCTGGCCTCGGTGGTCCTGAACGCCTGCTTCGACGTCGCCGCCGGCT
TCTCCAGCGGCATCCCGTGCCCCGCCGACCTCTTCTCCTGCCTGGGCAAC
GACGAGTGCAGCTCCTGCCTGGACGCCCTCCAGGAGAGCGACCTCGCGGT
CCTCGACGGCGACTTCGAGCTTTGCGGCGACCTGTACGCGGACGTGTGCA
CCACCGCCCAGGCGGTCGACTGCAACACCGACAACGAGGAACTGGTCGAG
TTCCTGACCTGCGTGGCCGACGACTCGTACGGGTGCGGGGATTTCACTAC
CTGCGCGGACTTCCTTCCCGCGGAGGAGGAGGAGGAGGAGACGCCGCCGC
CCACCGCCACCCCGTCCCCGCTCGTCGCCAACGCCAAGACGGCCTCGCCT
GGGACGGCCGCGCCCAGCGGCGGCGGCGGCGGCGGTGACGACGACGCGAC
GACCACCGCCCCCGCGGCCCTCGTTCCTACACCCACACCCTCTTTCCCCC
TGCCCGAAACCACCGCGCCTACCGCGGTGGCCACTGCTACAAGCGCTCCG
TCTCCTGGCTCCCGCGGCGGCCTGTTTTCTCCCACCGCCGCGCCCACCGG
CGGTGGCAACCAGCAGGGCCTCGGCACCGCCTTCCCGACCTCAGCCTCGG
TGTTCGAGGGCTTCATGGACACGCTGGCTCCGTCCGCCGCGCCGACCGGG
CCCGACGGCGGTCTCCGTGGGGGAGTCGCGTTCTCGGACTCGCCCACCGC
GGCTCCGACGATCGGGTTTGAGGACGCGCTGGACGGCGCTAGCGCGGGCA
GCGCCTTGGCTGTGGCTAGCCCCGTCGCCGTCGTCGCTGTCGCCGTGGTC
TTCTTCGCGGCGACTGCCCTCGTCGATTTCTCGCCGTATCATCTGGCCGC
TTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig896:4853..5806-

>mRNA_E_fasciculatus_S2_contig896.17050.1 ID=mRNA_E_fasciculatus_S2_contig896.17050.1|Name=mRNA_E_fasciculatus_S2_contig896.17050.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=954bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig896:4853..5806- (Ectocarpus fasciculatus EfasUO2)
ATGAGCTCTAGGCGGGAGACCGGCGGCGGCGGCAGGCAGCTCGCGGCGGC
GCTGCTGGCCTCGGTGGTCCTGAACGCCTGCTTCGACGTCGCCGCCGGCT
TCTCCAGCGGCATCCCGTGCCCCGCCGACCTCTTCTCCTGCCTGGGCAAC
GACGAGTGCAGCTCCTGCCTGGACGCCCTCCAGGAGAGCGACCTCGCGGT
CCTCGACGGCGACTTCGAGCTTTGCGGCGACCTGTACGCGGACGTGTGCA
CCACCGCCCAGGCGGTCGACTGCAACACCGACAACGAGGAACTGGTCGAG
TTCCTGACCTGCGTGGCCGACGACTCGTACGGGTGCGGGGATTTCACTAC
CTGCGCGGACTTCCTTCCCGCGGAGGAGGAGGAGGAGGAGACGCCGCCGC
CCACCGCCACCCCGTCCCCGCTCGTCGCCAACGCCAAGACGGCCTCGCCT
GGGACGGCCGCGCCCAGCGGCGGCGGCGGCGGCGGTGACGACGACGCGAC
GACCACCGCCCCCGCGGCCCTCGTTCCTACACCCACACCCTCTTTCCCCC
TGCCCGAAACCACCGCGCCTACCGCGGTGGCCACTGCTACAAGCGCTCCG
TCTCCTGGCTCCCGCGGCGGCCTGTTTTCTCCCACCGCCGCGCCCACCGG
CGGTGGCAACCAGCAGGGCCTCGGCACCGCCTTCCCGACCTCAGCCTCGG
TGTTCGAGGGCTTCATGGACACGCTGGCTCCGTCCGCCGCGCCGACCGGG
CCCGACGGCGGTCTCCGTGGGGGAGTCGCGTTCTCGGACTCGCCCACCGC
GGCTCCGACGATCGGGTTTGAGGACGCGCTGGACGGCGCTAGCGCGGGCA
GCGCCTTGGCTGTGGCTAGCCCCGTCGCCGTCGTCGCTGTCGCCGTGGTC
TTCTTCGCGGCGACTGCCCTCGTCGATTTCTCGCCGTATCATCTGGCCGC
TTGA
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