mRNA_E_fasciculatus_S2_contig8936.17034.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8936.17034.1
Unique NamemRNA_E_fasciculatus_S2_contig8936.17034.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8936.17034.1 vs.
Match: PHD-type (domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN05_ECTSI)

HSP 1 Score: 290 bits (743), Expect = 4.890e-90
Identity = 187/213 (87.79%), Postives = 190/213 (89.20%), Query Frame = 1 
Query:    1 EGKLLACREEGCGRRFHMGCLKPPLSRTPKEGDWSCPICRKRKAHAEREAKAQAKRDQKKRELAAKLAKSPVKTIKLEATDGPRNIIGIILPERSVESVCDALRGYEAELEKQREAGERREXXXXXXXXXXXXXXXXAKRAQQAMKLQERNKQKXXXXXXXXXXXXXXXXSGDVK--EEAVEAEEDGGAAPVLSSLDGGRGSFNGDLVQLLQG 633
            EGKLLACREEGCGRRFHMGCLKPPLSRTPKEG+WSCPICRKRKAHAEREAKAQAKRDQKKRELAAKLAKSPVKTIKLEATDGPRNIIGIILPERSVESVCDALRGYEAELEKQREAGERRE XXXXXXXXXXXXXXX    QQAMKL+ERNKQK       XXXX     SGDVK  EEA E E+DGGA PVLSSLDG RGSFNGDLVQLLQG
Sbjct:  559 EGKLLACREEGCGRRFHMGCLKPPLSRTPKEGEWSCPICRKRKAHAEREAKAQAKRDQKKRELAAKLAKSPVKTIKLEATDGPRNIIGIILPERSVESVCDALRGYEAELEKQREAGERRERXXXXXXXXXXXXXXXXXXXQQAMKLEERNKQKGKAHGGGXXXXA----SGDVKREEEAGEEEQDGGA-PVLSSLDG-RGSFNGDLVQLLQG 765
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BLAST of mRNA_E_fasciculatus_S2_contig8936.17034.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWU5_9PHAE)

HSP 1 Score: 279 bits (713), Expect = 7.070e-83
Identity = 179/213 (84.04%), Postives = 181/213 (84.98%), Query Frame = 1 
Query:    1 EGKLLACREEGCGRRFHMGCLKPPLSRTPKEGDWSCPICRKRKAHAEREAKAQAKRDQKKRELAAKLAKSPVKTIKLEATDGPRNIIGIILPERSVESVCDALRGYEAELEKQREAGERREXXXXXXXXXXXXXXXXAKRAQQAMKLQERNKQKXXXXXXXXXXXXXXXXSGDVK--EEAVEAEEDGGAAPVLSSLDGGRGSFNGDLVQLLQG 633
            EGKLLACREEGCGRRFHMGCLKPPLSRTPKEG WSCPICRKR AH EREAKAQAKRDQKKRELAAKLAKSPVKTIKLEATDGPRNIIGIILPERSVESVCDALRGYEAELEKQREAGERREXXXXXXXXXXXXXXXX      AMKL+ERNKQK                 GDVK  EEA E E+DGGA PVLSSLDG RGSFNGDLVQLLQG
Sbjct:  851 EGKLLACREEGCGRRFHMGCLKPPLSRTPKEGKWSCPICRKRTAHLEREAKAQAKRDQKKRELAAKLAKSPVKTIKLEATDGPRNIIGIILPERSVESVCDALRGYEAELEKQREAGERREXXXXXXXXXXXXXXXXXXXXXXAMKLEERNKQKGKVGGGGAGAR------GDVKREEEAKEEEQDGGA-PVLSSLDG-RGSFNGDLVQLLQG 1055
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8936.17034.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
PHD-type4.890e-9087.79domain-containing protein (Fragment) n=1 Tax=Ectoc... [more]
Uncharacterized7.070e-8384.04protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8936contigE_fasciculatus_S2_contig8936:2949..5361 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score294.7
Seed ortholog evalue3.8e-77
Seed eggNOG ortholog2880.D8LN05
Model size689
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.cellular response to interleukin-11
EggNOG OGsKOG1513@1,KOG1513@2759
Cds size687
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842547.5446432-CDS-E_fasciculatus_S2_contig8936:2950..33161696842547.5446432-CDS-E_fasciculatus_S2_contig8936:2950..3316Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8936 2951..3316 -
1696842547.5579267-CDS-E_fasciculatus_S2_contig8936:3760..38591696842547.5579267-CDS-E_fasciculatus_S2_contig8936:3760..3859Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8936 3761..3859 -
1696842547.5687082-CDS-E_fasciculatus_S2_contig8936:4710..48511696842547.5687082-CDS-E_fasciculatus_S2_contig8936:4710..4851Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8936 4711..4851 -
1696842547.5789332-CDS-E_fasciculatus_S2_contig8936:5280..53611696842547.5789332-CDS-E_fasciculatus_S2_contig8936:5280..5361Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8936 5281..5361 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8936.17034.1prot_E_fasciculatus_S2_contig8936.17034.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8936 2951..5361 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8936.17034.1

>prot_E_fasciculatus_S2_contig8936.17034.1 ID=prot_E_fasciculatus_S2_contig8936.17034.1|Name=mRNA_E_fasciculatus_S2_contig8936.17034.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=229bp
EGKLLACREEGCGRRFHMGCLKPPLSRTPKEGDWSCPICRKRKAHAEREA
KAQAKRDQKKRELAAKLAKSPVKTIKLEATDGPRNIIGIILPERSVESVC
DALRGYEAELEKQREAGERREREEKEARETVERDRQEAKRAQQAMKLQER
NKQKGKARGGGAGAGAGAGASGDVKEEAVEAEEDGGAAPVLSSLDGGRGS
FNGDLVQLLQGGGGARAAKRTAMQQMKRD
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mRNA from alignment at E_fasciculatus_S2_contig8936:2949..5361-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8936.17034.1 ID=mRNA_E_fasciculatus_S2_contig8936.17034.1|Name=mRNA_E_fasciculatus_S2_contig8936.17034.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2413bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8936:2949..5361- (Ectocarpus fasciculatus EfasUO2)
GAGGGGAAGCTGCTTGCCTGCAGGGAGGAGGGCTGCGGGAGACGGTTCCA
CATGGGGTGCCTCAAGCCTCCCCTGTCGAGGGTGAGCCGTGGTTGTCGAT
GGTTGGGGCTCGTGTAGTTGAAGTGTTGGTGTTGGGTGTTGCCTTACAAG
GGATTGTGCCAGGTATGTAGCCATCGCCGTGGCCTACTACAGCAAGCAGT
TCGTGCTCGAAAACGTTCTCTCGAAAAGAGCAAAAGGAACGGCGATGACA
GTATATCTCCAAGCAAAACGTGCTATACGCCCCTCCCGACTCTATCGAGC
AGTTGTCTCGCATGTCTTGACCCTGTTTTTGCAAATTCGACGGATTTCGA
CTTCCCCCCCCCCCCCGCTCGGCGGCAGCTTTGCCGCTTACGGATGTTGC
TCCTAAGAAAGGACGCTCAGGTAGATCTCGTGTTCCTTGTACCGCAAGTC
CCCTGCCCAACCCGAATCTCGACTGGACTGCTTGCTTGTTCATCACACTA
AAACGAACAGACTCCGAAGGAGGGGGACTGGTCGTGTCCCATTTGCCGCA
AGAGGAAAGCACACGCGGAGCGAGAGGCCAAGGCCCAGGCCAAGCGAGAC
CAGAAGAAGCGAGAGCTGGCGGCTAAGTTGGCCAAGTCACCCGTCAAGAC
GGTGCGTGTTTTGTTTTTTTTACCTGTTGCGCATCAATTTCATCTATTAC
ACAGATACAAGTCTGGGATAGACTAGCGATGAATTCGTGGCTTTCGCGGA
GGCGCTGTTGTCTACGATTCACCGAGCAGCATACGGTAGTTGATACCTTC
CCTGTGGGCAACAGGTGAATTTTGTGTGTTTCTGTTTCTTCTTGGGGATG
GTTTGAGTGCCAGACGAGTGCATGCGCGCCACCCCTCCTCGTTGTTGTGT
GTGTTACAGTAGGTCCATGTCTCGTCTCGTCTCGTCTCGTGCTGTCTCGT
CTCGTCTCGTCTCGTGCTGTCTCGTCTCGTCTCGTCTCGTGCTGTCTCGT
CTCGTCTCGTCTCGTCTCGTCTCGTCTCGTCTCGTCTCGTCTCGTCTCGT
CTCGTCTCGTCTCGTGCTGGGGATGGTATCGCCTCGGACATGACAACTAT
TTACTGTCTGCGTAGGGTGCCGCCTCGTGGACGGTACTGCTGTCTGTGGT
AGTGTTGTGTCGAGCAATCTTTGCTCCCTCCGTAGTCGTTTCGTTCCGTC
AATTGGTCTGTCTCTAGTCTCTAGTCTCTACATGGCCGTCTACTGGTGGC
GTGTGAGTGGTCTCCATGCACGCCGTTGTCAGTCGCGCAGGCGGAATTGT
TTTTTTTTAACGTGGGGGGAGGAGGGGGCAGCAGCTATGACTTCGACAAC
AGCGACGGAAAAGACGGCGAGTGGCAAATAACGGCGAAGCCCGCAACGAC
GTGGGAGGCTACAACTAACCTGCCAGGGCCCTAGTATCAAAACAAAACAC
CACTCCCCCCGAAACCGCTCCCTCTCTCCCGACGCATAATCTCCTTCGGC
AGATCAAGCTGGAAGCGACGGACGGGCCTCGGAACATCATCGGCATCATC
CTCCCGGAGCGGTCGGTGGAGAGCGTGTGCGACGCCCTTCGCGGATACGA
GGTTGGTCGGGTCGGGTCGCGGTTTCGTTTATTGTGTGTCCCGGTCCGGG
CCCGGAGGCAGGAGAGTTGTACCGGTTTTGACGGGTCTCCGAAGCTCGCG
AACGTTTGTCGATGTAGTCGCGACTTGGTTGTTGGGCCGAGAATATGTGT
TGAGCGAAAAGGTGTCTGCTAGGGTGTTGCATGCGTGGCTGTGTGGCGGT
AGGAAGAGGTATATATCTATCTCTCGGCGCTGTTGTTGTGCGAGGGTGTG
GTGTTTGGAGTTCGTTCGTGCCCACTAAAGTCGGCACCTTGCTGCCGCCT
CGTTCTCGCCTACTTGGCCACCTCAAAACCGTCATGTTGTATCTCTCGCC
AGTTCGTCACCTCGAAAACCTTAACCCTCATGCTGTATCTCGCCTTCTCA
TCACCTCGAAACCCTACTGCTGTATCTGTATCTCCTTACGAACAGGCCGA
GCTTGAGAAGCAGCGCGAGGCCGGGGAAAGAAGGGAGAGGGAGGAGAAGG
AGGCCCGGGAGACCGTGGAGAGGGATCGCCAGGAGGCCAAGCGCGCGCAG
CAGGCCATGAAGCTCCAAGAGCGCAACAAGCAGAAGGGCAAGGCTCGAGG
GGGCGGAGCCGGAGCTGGAGCCGGAGCCGGAGCCAGCGGAGACGTGAAGG
AGGAGGCGGTGGAAGCGGAGGAAGACGGAGGTGCGGCGCCTGTGCTGTCT
TCGCTGGACGGCGGGCGTGGCTCGTTTAACGGGGACCTGGTGCAGCTGCT
GCAGGGCGGAGGAGGAGCGCGGGCGGCCAAGAGGACGGCAATGCAGCAGA
TGAAGAGGGACGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8936:2949..5361-

>mRNA_E_fasciculatus_S2_contig8936.17034.1 ID=mRNA_E_fasciculatus_S2_contig8936.17034.1|Name=mRNA_E_fasciculatus_S2_contig8936.17034.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=687bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8936:2949..5361- (Ectocarpus fasciculatus EfasUO2)
GAGGGGAAGCTGCTTGCCTGCAGGGAGGAGGGCTGCGGGAGACGGTTCCA
CATGGGGTGCCTCAAGCCTCCCCTGTCGAGGACTCCGAAGGAGGGGGACT
GGTCGTGTCCCATTTGCCGCAAGAGGAAAGCACACGCGGAGCGAGAGGCC
AAGGCCCAGGCCAAGCGAGACCAGAAGAAGCGAGAGCTGGCGGCTAAGTT
GGCCAAGTCACCCGTCAAGACGATCAAGCTGGAAGCGACGGACGGGCCTC
GGAACATCATCGGCATCATCCTCCCGGAGCGGTCGGTGGAGAGCGTGTGC
GACGCCCTTCGCGGATACGAGGCCGAGCTTGAGAAGCAGCGCGAGGCCGG
GGAAAGAAGGGAGAGGGAGGAGAAGGAGGCCCGGGAGACCGTGGAGAGGG
ATCGCCAGGAGGCCAAGCGCGCGCAGCAGGCCATGAAGCTCCAAGAGCGC
AACAAGCAGAAGGGCAAGGCTCGAGGGGGCGGAGCCGGAGCTGGAGCCGG
AGCCGGAGCCAGCGGAGACGTGAAGGAGGAGGCGGTGGAAGCGGAGGAAG
ACGGAGGTGCGGCGCCTGTGCTGTCTTCGCTGGACGGCGGGCGTGGCTCG
TTTAACGGGGACCTGGTGCAGCTGCTGCAGGGCGGAGGAGGAGCGCGGGC
GGCCAAGAGGACGGCAATGCAGCAGATGAAGAGGGAC
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