mRNA_E_fasciculatus_S2_contig8926.17026.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E_fasciculatus_S2_contig8926.17026.1
Unique Name	mRNA_E_fasciculatus_S2_contig8926.17026.1
Type	mRNA
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig8926.17026.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1D3_9PHAE)

HSP 1 Score: 223 bits (567), Expect = 2.030e-70
Identity = 115/129 (89.15%), Postives = 122/129 (94.57%), Query Frame = 1

Query:   58 VAVVTAKVALNATTGLNVDISDFLKDVKDGLVEELVDRTLDEEALLGAVSGDGDIGADLQRDTRASYEALKRFMDKEQIDRVKNARDGDGYIDFRDEMKRVADGRGGMVWVRNENVQKWLDSRSTAAPS 444
            VAVVTAKVALNATTGL+VDIS+FLKDVKDGLV ELVDRTLD EALL AVSGD DIGA+LQRDTRASYEALK+FMDKEQ+DRVKNARDGDGYIDFRDEMKRV DGRGGMVWVRN+NVQKWLDS S AAP+
Sbjct:  168 VAVVTAKVALNATTGLDVDISNFLKDVKDGLVNELVDRTLD-EALLRAVSGDDDIGAELQRDTRASYEALKKFMDKEQVDRVKNARDGDGYIDFRDEMKRVTDGRGGMVWVRNDNVQKWLDSHSIAAPT 295

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BLAST of mRNA_E_fasciculatus_S2_contig8926.17026.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1K4_9PHAE)

HSP 1 Score: 228 bits (581), Expect = 5.540e-67
Identity = 115/129 (89.15%), Postives = 123/129 (95.35%), Query Frame = 1

Query:   58 VAVVTAKVALNATTGLNVDISDFLKDVKDGLVEELVDRTLDEEALLGAVSGDGDIGADLQRDTRASYEALKRFMDKEQIDRVKNARDGDGYIDFRDEMKRVADGRGGMVWVRNENVQKWLDSRSTAAPS 444
            VAVVTAKVALNATTGL+VDIS+FLKDVKDGLV ELVDRT+DEEALL AVSGD DIGA+LQRDTRASYEALK+FMDKEQ+DRVKNARDGDGYIDFRDEMKRV DGRGGMVWVRN+NVQKWLDS S AAP+
Sbjct:  836 VAVVTAKVALNATTGLDVDISNFLKDVKDGLVNELVDRTIDEEALLRAVSGDDDIGAELQRDTRASYEALKKFMDKEQVDRVKNARDGDGYIDFRDEMKRVTDGRGGMVWVRNDNVQKWLDSHSIAAPT 964

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BLAST of mRNA_E_fasciculatus_S2_contig8926.17026.1 vs.
Match: LRR-GTPase (of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJS7_ECTSI)

HSP 1 Score: 229 bits (583), Expect = 1.010e-66
Identity = 117/129 (90.70%), Postives = 123/129 (95.35%), Query Frame = 1

Query:   58 VAVVTAKVALNATTGLNVDISDFLKDVKDGLVEELVDRTLDEEALLGAVSGDGDIGADLQRDTRASYEALKRFMDKEQIDRVKNARDGDGYIDFRDEMKRVADGRGGMVWVRNENVQKWLDSRSTAAPS 444
            VAVVTAKVALNATTGL+VDISDFLKDVKDGLVEELVDRTLD+EALL AV GD +IGADLQRDTRASYEALK+FMDKEQI+RVKN RDGDGYIDFRDEMKRV DGRGGMVWVRNENVQKWLDSRS AAP+
Sbjct: 1183 VAVVTAKVALNATTGLHVDISDFLKDVKDGLVEELVDRTLDDEALLRAVLGDDNIGADLQRDTRASYEALKKFMDKEQIERVKNTRDGDGYIDFRDEMKRVPDGRGGMVWVRNENVQKWLDSRSIAAPT 1311

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BLAST of mRNA_E_fasciculatus_S2_contig8926.17026.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K516_9PHAE)

HSP 1 Score: 224 bits (571), Expect = 2.670e-66
Identity = 113/129 (87.60%), Postives = 123/129 (95.35%), Query Frame = 1

Query:   58 VAVVTAKVALNATTGLNVDISDFLKDVKDGLVEELVDRTLDEEALLGAVSGDGDIGADLQRDTRASYEALKRFMDKEQIDRVKNARDGDGYIDFRDEMKRVADGRGGMVWVRNENVQKWLDSRSTAAPS 444
            VAVVTA+VALNATTGL+V+IS+FL+DVKDGLV ELVDRTLDEEALL AVSGD DIGA+LQRDTRASYEALK+FMDKEQ+DRVKNARDGDGYIDFRDEMKRV DGRGGMVWVRN+NVQKWLDS S AAP+
Sbjct:  668 VAVVTARVALNATTGLDVNISNFLQDVKDGLVNELVDRTLDEEALLRAVSGDDDIGAELQRDTRASYEALKKFMDKEQVDRVKNARDGDGYIDFRDEMKRVTDGRGGMVWVRNDNVQKWLDSHSIAAPT 796

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BLAST of mRNA_E_fasciculatus_S2_contig8926.17026.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY4_9PHAE)

HSP 1 Score: 213 bits (541), Expect = 5.860e-64
Identity = 109/129 (84.50%), Postives = 119/129 (92.25%), Query Frame = 1

Query:   58 VAVVTAKVALNATTGLNVDISDFLKDVKDGLVEELVDRTLDEEALLGAVSGDGDIGADLQRDTRASYEALKRFMDKEQIDRVKNARDGDGYIDFRDEMKRVADGRGGMVWVRNENVQKWLDSRSTAAPS 444
            VAVVTAKVALNATTGLNVDISDFLKDVKDGLVEELVDRTLDE+ALL AV G+  IGAD+QRDTRASYEALK FM+ E+  R KNARDGDGYIDFR+EMKRV +GRGGMVWVRN+NVQKWL+SRSTAAP+
Sbjct:  392 VAVVTAKVALNATTGLNVDISDFLKDVKDGLVEELVDRTLDEDALLRAVLGEDSIGADMQRDTRASYEALKVFMENEERRRRKNARDGDGYIDFREEMKRVTNGRGGMVWVRNDNVQKWLESRSTAAPT 520

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BLAST of mRNA_E_fasciculatus_S2_contig8926.17026.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD1_9PHAE)

HSP 1 Score: 216 bits (551), Expect = 9.610e-64
Identity = 112/129 (86.82%), Postives = 120/129 (93.02%), Query Frame = 1

Query:   58 VAVVTAKVALNATTGLNVDISDFLKDVKDGLVEELVDRTLDEEALLGAVSGDGDIGADLQRDTRASYEALKRFMDKEQIDRVKNARDGDGYIDFRDEMKRVADGRGGMVWVRNENVQKWLDSRSTAAPS 444
            VAVVTAKVALNATTGL+VDIS+FLKDVKDGLV ELVDRTLD EALL AVSGD DIGA+LQ DTRASYEALK+FMD+EQ+DRVKNARDGDGYID RDEMKRV DGRGGMVWVRN+NVQKWLDS S AAP+
Sbjct:  612 VAVVTAKVALNATTGLDVDISNFLKDVKDGLVNELVDRTLD-EALLRAVSGDDDIGAELQTDTRASYEALKKFMDQEQVDRVKNARDGDGYIDLRDEMKRVTDGRGGMVWVRNDNVQKWLDSHSIAAPT 739

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BLAST of mRNA_E_fasciculatus_S2_contig8926.17026.1 vs.
Match: LRR-GTPase (of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS7_ECTSI)

HSP 1 Score: 209 bits (532), Expect = 7.840e-60
Identity = 103/130 (79.23%), Postives = 121/130 (93.08%), Query Frame = 1

Query:   58 VAVVTAKVALNATTGLNVDISDFLKDVKDGLVEELVDRTLDEEALLGAVSGDGDIGADLQRDTRASYEALKRFMDKEQIDRVKNARDGDGYIDFRDEMKRVADGRGGMVWVRNENVQKWLDSRSTAAPST 447
            VA+VTAKVAL AT+GL+VD+SDFLKDVKDGLV ELVD TLDE+ALL  VSG+ D+GAD+++DTRASYEALK+FMDKEQ+DR+KNARDGDGY+DFRD+MKRVADGRGGMVW+RNENVQ+W DSRS AA S+
Sbjct: 1398 VALVTAKVALKATSGLDVDLSDFLKDVKDGLVGELVDPTLDEDALLRIVSGEEDVGADMRKDTRASYEALKKFMDKEQMDRLKNARDGDGYVDFRDKMKRVADGRGGMVWIRNENVQQWTDSRSNAALSS 1527

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig8926.17026.1 vs.
Match: LRR-GTPase (of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC3_ECTSI)

HSP 1 Score: 208 bits (529), Expect = 1.910e-59
Identity = 103/129 (79.84%), Postives = 116/129 (89.92%), Query Frame = 1

Query:   58 VAVVTAKVALNATTGLNVDISDFLKDVKDGLVEELVDRTLDEEALLGAVSGDGDIGADLQRDTRASYEALKRFMDKEQIDRVKNARDGDGYIDFRDEMKRVADGRGGMVWVRNENVQKWLDSRSTAAPS 444
            VAVVTAKVALNAT GLNV+IS+FLKDVKDGL +ELVDR+LDE+ALL  VSG+ D+ AD+Q DTRASYEALK+ MDKEQ+ R+KNARDGDGYIDFRD+MKRV DGRGGMVWVRNENVQ+WLDS S  APS
Sbjct: 1116 VAVVTAKVALNATAGLNVNISEFLKDVKDGLADELVDRSLDEDALLRVVSGEEDVDADMQNDTRASYEALKKLMDKEQVGRLKNARDGDGYIDFRDKMKRVPDGRGGMVWVRNENVQRWLDSHSNTAPS 1244

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig8926.17026.1 vs.
Match: LRR-GTPase (of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA1_ECTSI)

HSP 1 Score: 203 bits (516), Expect = 8.240e-58
Identity = 105/129 (81.40%), Postives = 114/129 (88.37%), Query Frame = 1

Query:   58 VAVVTAKVALNATTGLNVDISDFLKDVKDGLVEELVDRTLDEEALLGAVSGDGDIGADLQRDTRASYEALKRFMDKEQIDRVKNARDGDGYIDFRDEMKRVADGRGGMVWVRNENVQKWLDSRSTAAPS 444
            V VVTAKVALNA TGLNVDISDFLKDVKDGLVEELVDRTLDE+ALL AVSGD  +GADLQRDTRASYEALK FM+ E+  R KNARDGDGYI+FR+EMKR+ DGRGG VWVRNENV+KWL S S+ APS
Sbjct:  903 VTVVTAKVALNAVTGLNVDISDFLKDVKDGLVEELVDRTLDEDALLRAVSGDDTVGADLQRDTRASYEALKVFMENEERRRRKNARDGDGYIEFREEMKRLPDGRGGEVWVRNENVRKWLASNSSPAPS 1031

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig8926.17026.1 vs.
Match: LRR-GTPase (of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G431_ECTSI)

HSP 1 Score: 197 bits (500), Expect = 1.410e-55
Identity = 102/129 (79.07%), Postives = 115/129 (89.15%), Query Frame = 1

Query:   58 VAVVTAKVALNATTGLNVDISDFLKDVKDGLVEELVDRTLDEEALLGAVSGDGDIGADLQRDTRASYEALKRFMDKEQIDRVKNARDGDGYIDFRDEMKRVADGRGGMVWVRNENVQKWLDSRSTAAPS 444
            VAVVTAKVALNATTGLNVD SDFLKDV+DGLV ELVDRTLDE AL   V+G+  IGAD+QR TRASYEALK+FMDKE+I R K+A+DGDGY+ FRDEMKRVADG+GGMVWVRN+NVQKWL+SR  AAP+
Sbjct:  964 VAVVTAKVALNATTGLNVDPSDFLKDVRDGLVGELVDRTLDEHALRRVVTGEEAIGADMQRGTRASYEALKKFMDKEEIKRCKDAKDGDGYVHFRDEMKRVADGKGGMVWVRNKNVQKWLESR--AAPT 1090

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig8926.17026.1 vs.

BLAST of mRNA_E_fasciculatus_S2_contig8926.17026.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 21


Match Name	E-value	Identity	Description
Uncharacterized	2.030e-70	89.15	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	5.540e-67	89.15	protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
LRR-GTPase	1.010e-66	90.70	of the ROCO family n=1 Tax=Ectocarpus siliculosus ...	[more]
Uncharacterized	2.670e-66	87.60	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	5.860e-64	84.50	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	9.610e-64	86.82	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
LRR-GTPase	7.840e-60	79.23	of the ROCO family n=1 Tax=Ectocarpus siliculosus ...	[more]
LRR-GTPase	1.910e-59	79.84	of the ROCO family n=1 Tax=Ectocarpus siliculosus ...	[more]
LRR-GTPase	8.240e-58	81.40	of the ROCO family, incomplete sequence n=1 Tax=Ec...	[more]
LRR-GTPase	1.410e-55	79.07	of the ROCO family, incomplete sequence n=1 Tax=Ec...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig8926	contig	E_fasciculatus_S2_contig8926:3945..4685 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	1
Start	0
Seed ortholog score	231.9
Seed ortholog evalue	2e-58
Seed eggNOG ortholog	2880.D8LJS7
Model size	450
KEGG rclass	RC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248
KEGG ko	ko:K01188
KEGG Reaction	R00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040
KEGG Pathway	ko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110
Hectar predicted targeting category	other localisation
GOs	GO:0000003,GO:0003002,GO:0003006,GO:0003674,GO:0004857,GO:0007275,GO:0007389,GO:0008150,GO:0009791,GO:0009908,GO:0022414,GO:0030234,GO:0032501,GO:0032502,GO:0043086,GO:0044092,GO:0048367,GO:0048608,GO:0048731,GO:0048832,GO:0048833,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0061458,GO:0065007,GO:0065009,GO:0090567,GO:0098772
Exons	2
EggNOG OGs	2CYK8@1,2S4YE@2759
EC	3.2.1.21
Cds size	450
CAZy	GH1
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko01000

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842546.7718468-CDS-E_fasciculatus_S2_contig8926:3944..4001	1696842546.7718468-CDS-E_fasciculatus_S2_contig8926:3944..4001	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig8926 3945..4001 +
1696842546.7866688-CDS-E_fasciculatus_S2_contig8926:4292..4685	1696842546.7866688-CDS-E_fasciculatus_S2_contig8926:4292..4685	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig8926 4293..4685 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig8926.17026.1	prot_E_fasciculatus_S2_contig8926.17026.1	Ectocarpus fasciculatus EfasUO2	polypeptide	E_fasciculatus_S2_contig8926 3945..4685 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E_fasciculatus_S2_contig8926:3945..4685+
coding sequence from alignment at E_fasciculatus_S2_contig8926:3945..4685+

protein sequence of mRNA_E_fasciculatus_S2_contig8926.17026.1

>prot_E_fasciculatus_S2_contig8926.17026.1 ID=prot_E_fasciculatus_S2_contig8926.17026.1|Name=mRNA_E_fasciculatus_S2_contig8926.17026.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=150bp
LGEENIACASGKTRICKKPVAVVTAKVALNATTGLNVDISDFLKDVKDGL
VEELVDRTLDEEALLGAVSGDGDIGADLQRDTRASYEALKRFMDKEQIDR
VKNARDGDGYIDFRDEMKRVADGRGGMVWVRNENVQKWLDSRSTAAPST*

mRNA from alignment at E_fasciculatus_S2_contig8926:3945..4685+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E_fasciculatus_S2_contig8926.17026.1 ID=mRNA_E_fasciculatus_S2_contig8926.17026.1|Name=mRNA_E_fasciculatus_S2_contig8926.17026.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=741bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8926:3945..4685+ (Ectocarpus fasciculatus EfasUO2)
CTGGGTGAAGAAAATATCGCCTGTGCTTCAGGTAAGACAAGAATTTGTAA
GAAGCCGGTCGGAGTCGGTGACACTATTTTAGGTGGGGTTGTGAGGTTAT
ACGCTTCCTGATACCCTCCTATTTGCGAGGATTGTCGCCTTCCGAACGAG
CACCTCTCCCCATGCAACACGGGTTTACATTTCCAAGGCGTGAAGTATTG
GGCTAGGTTGCTTGGGTGATGCCTTGGCACGACAGGTCAGTATTCCCATG
GGGAACTGCTAGTAACCCTGACCCCCGGACCAAGAAAGTGATTATGAGCT
GTGGTGGATCCTTTCTTGTCCTCTTGGTGGTGCCCTCTCTTCCTTTAGGT
GGCCGTGGTGACCGCGAAGGTGGCGCTGAACGCAACGACAGGGTTGAACG
TGGACATCTCGGATTTCCTGAAGGACGTGAAAGATGGGTTGGTCGAGGAG
CTAGTCGACCGCACTCTCGACGAGGAGGCGCTACTTGGTGCTGTTTCGGG
TGACGGCGACATCGGCGCAGACTTGCAAAGGGATACGCGGGCCTCGTATG
AAGCGCTGAAGAGGTTCATGGACAAGGAGCAAATCGACAGGGTCAAGAAC
GCCCGGGATGGTGATGGCTACATAGACTTCAGGGACGAGATGAAGCGTGT
CGCCGACGGGAGGGGCGGGATGGTGTGGGTTCGGAACGAAAACGTTCAAA
AGTGGTTGGACTCGCGTTCGACTGCCGCTCCATCTACGTAG

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8926:3945..4685+

>mRNA_E_fasciculatus_S2_contig8926.17026.1 ID=mRNA_E_fasciculatus_S2_contig8926.17026.1|Name=mRNA_E_fasciculatus_S2_contig8926.17026.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=450bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8926:3945..4685+ (Ectocarpus fasciculatus EfasUO2)
CTGGGTGAAGAAAATATCGCCTGTGCTTCAGGTAAGACAAGAATTTGTAA
GAAGCCGGTGGCCGTGGTGACCGCGAAGGTGGCGCTGAACGCAACGACAG
GGTTGAACGTGGACATCTCGGATTTCCTGAAGGACGTGAAAGATGGGTTG
GTCGAGGAGCTAGTCGACCGCACTCTCGACGAGGAGGCGCTACTTGGTGC
TGTTTCGGGTGACGGCGACATCGGCGCAGACTTGCAAAGGGATACGCGGG
CCTCGTATGAAGCGCTGAAGAGGTTCATGGACAAGGAGCAAATCGACAGG
GTCAAGAACGCCCGGGATGGTGATGGCTACATAGACTTCAGGGACGAGAT
GAAGCGTGTCGCCGACGGGAGGGGCGGGATGGTGTGGGTTCGGAACGAAA
ACGTTCAAAAGTGGTTGGACTCGCGTTCGACTGCCGCTCCATCTACGTAG