mRNA_E_fasciculatus_S2_contig891.17011.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig891.17011.1
Unique NamemRNA_E_fasciculatus_S2_contig891.17011.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig891.17011.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig891contigE_fasciculatus_S2_contig891:880..3314 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size2028
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-27_000740.1
Cds size2028
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842545.3740919-CDS-E_fasciculatus_S2_contig891:879..22981696842545.3740919-CDS-E_fasciculatus_S2_contig891:879..2298Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig891 880..2298 +
1696842545.385101-CDS-E_fasciculatus_S2_contig891:2705..33141696842545.385101-CDS-E_fasciculatus_S2_contig891:2705..3314Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig891 2706..3314 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig891.17011.1prot_E_fasciculatus_S2_contig891.17011.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig891 880..3314 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig891.17011.1

>prot_E_fasciculatus_S2_contig891.17011.1 ID=prot_E_fasciculatus_S2_contig891.17011.1|Name=mRNA_E_fasciculatus_S2_contig891.17011.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=676bp
MAGSSGFGDRKPERDVRVTRRCPDAAITNKPHRGSSTTSRESTNKGGSGA
STETLSTRGNRSESDVLGTPLVRENVFLDTGSASLQNESRTAIPSTARSL
SSPPLGGDDWFARPAQGDQEVHSQLEREEDEAVQYNDDDTAADGNSTKTD
GGGTCTEHSSPYSSRAGHDSHGSDLSRSTRGTFDTVSDLSCSGIFPGLSA
VGDQESAQDSSSVSPNLARLAASPGGDGQDSDDIEDSHITHLVQDRRRWQ
LRAFEAEYELASMRSFRAHLDSGGDETRGEGSRPLESTEHQDSCSATTQA
PANSKEQLFSGVPPIEVDHESNGQWLSQTVDQPSSSASSSSTGRRSVEAP
RSVVGVLSAANGTQVLEAGSAQSNHFAANRIGCETTSDSNDLSQHVGSDD
DGGHGKFLGVVDNDDEQENNRTGSHCLLREEITHLKENLRQAELREAAAE
ATITSVTQRARAAEVSREVKEIQQIRNLEIRLARRTNNDNNHQKACVRWR
GRQFSGGSENVDVSTNLDFSRPQHEVFPVNEEEEEHPSSPCDSVKNNHGC
PPSMIPTDAHRRSPISADRTIHGPTGPDLLPAKRESARRAMRIFRQSCVD
IGARATRAGGVVSAAAAAVSETAKDVAHSATAAVGGENILGQHRGERKAA
DRCSGIGTDGGPVEAYWGSDYCTSM*
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mRNA from alignment at E_fasciculatus_S2_contig891:880..3314+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig891.17011.1 ID=mRNA_E_fasciculatus_S2_contig891.17011.1|Name=mRNA_E_fasciculatus_S2_contig891.17011.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2435bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig891:880..3314+ (Ectocarpus fasciculatus EfasUO2)
ATGGCCGGCAGTAGTGGATTCGGTGATAGGAAGCCTGAAAGGGACGTGCG
AGTGACCAGAAGATGCCCCGATGCAGCGATAACGAACAAACCACATCGTG
GCAGCAGCACCACAAGCAGAGAGAGCACCAACAAGGGCGGTAGTGGTGCT
TCGACGGAGACCTTGTCCACCCGTGGCAATCGCTCCGAGAGCGATGTTTT
AGGGACTCCTTTGGTCCGCGAAAACGTCTTCCTTGACACCGGCTCTGCAA
GTCTACAGAATGAGAGTCGCACGGCCATACCAAGCACCGCACGAAGTCTA
TCGTCGCCACCGCTGGGCGGTGACGATTGGTTCGCACGACCCGCCCAAGG
CGACCAAGAAGTGCACTCGCAACTTGAAAGAGAAGAGGACGAAGCCGTCC
AATATAACGATGACGACACCGCCGCCGATGGTAACTCAACGAAAACGGAC
GGGGGCGGAACCTGTACAGAGCACAGTTCTCCCTACAGTTCGAGGGCCGG
CCACGACAGTCATGGCAGCGATTTGTCTCGAAGCACGCGGGGGACCTTTG
ATACGGTTTCTGATCTCTCTTGCTCCGGGATCTTTCCCGGACTTAGCGCT
GTGGGTGACCAAGAGAGCGCCCAGGACTCCTCCAGCGTGTCACCTAACCT
CGCTCGTTTGGCGGCTTCTCCTGGTGGTGATGGTCAGGACAGTGACGACA
TTGAGGATAGCCATATCACTCATCTTGTCCAAGATAGACGTCGGTGGCAG
CTTCGAGCTTTCGAAGCCGAGTACGAGCTAGCCTCGATGCGATCCTTCCG
TGCTCATTTGGATAGCGGCGGCGACGAAACCAGGGGGGAGGGATCGCGAC
CACTAGAATCAACAGAACACCAAGACTCTTGCTCCGCCACCACGCAAGCA
CCTGCAAACTCCAAAGAACAGCTTTTTTCGGGAGTGCCACCGATTGAGGT
CGATCATGAGTCTAATGGCCAATGGCTATCGCAGACAGTGGACCAACCGT
CTTCCTCAGCCTCTTCATCCTCCACAGGCAGGCGAAGCGTGGAAGCACCT
CGGTCGGTGGTGGGCGTCTTGAGTGCCGCCAACGGAACCCAGGTCTTAGA
GGCAGGGTCGGCACAAAGCAACCATTTTGCAGCGAACAGAATCGGGTGCG
AAACAACCAGTGATTCAAACGACTTGTCCCAGCATGTCGGTAGCGATGAT
GATGGGGGCCATGGCAAATTCTTGGGCGTTGTCGATAACGACGATGAACA
AGAAAATAACAGGACGGGTAGTCACTGTCTACTACGGGAGGAAATTACCC
ACTTGAAGGAGAATCTTCGACAAGCGGAACTTCGGGAGGCGGCGGCAGAG
GCTACCATTACGAGTGTCACACAGCGAGCGCGGGCGGCCGAGGTGTCTCG
TGAGGTCAAAGAAATCCAGGTCAGAGACTGTAAGAGGTTCATGTGGGGCT
CGTGGTGATTATGTACTTTTGACGTAAATGTGGGGCAAGCAGGACTGCAA
CACCTTTCCAAAGGCGCCGAAACTGTTTGTGAATACGAGCACTTTCTTTC
CTCCCGTTTGTGAACGTACCTAAAACGTCTGTGTCATATCAAAGCTATTG
GTATGTAAGGGTCCCCATTCCTCTGCTGGTTCGACCACCGGCTAGGTGAG
CGTTGGTCTACGTTTATTGTACATGTGGGATGCAGATCTGGCATATCCAA
CACTCCTTCGTGTATGTAGTCCATTCGCCGATCTATTTTGCATCGAGCGA
GCTATTTTGTGCTCACGTTTTATGTAGTCTCCACAATCGAAACAATGAAC
CCCTTGTTGAACTACATGCTGCCAAGCAGATCCGAAACCTCGAGATCAGG
CTCGCCAGGCGTACGAACAACGACAACAACCACCAAAAGGCATGCGTGCG
CTGGAGGGGGCGACAATTCTCGGGTGGCAGTGAGAACGTGGATGTTAGCA
CGAACCTCGATTTCTCCCGGCCACAGCACGAGGTATTTCCAGTGAACGAA
GAGGAGGAGGAACACCCATCGTCGCCGTGTGACTCTGTAAAAAACAACCA
CGGGTGCCCCCCTTCTATGATACCGACTGATGCGCATCGTCGCAGCCCCA
TCTCGGCCGACCGTACCATTCATGGACCTACTGGACCCGACCTGCTGCCC
GCCAAAAGGGAAAGTGCTCGGCGGGCAATGCGAATTTTCCGCCAGAGCTG
TGTTGATATCGGGGCACGAGCAACGAGGGCAGGTGGTGTGGTATCGGCAG
CAGCGGCAGCTGTAAGCGAGACCGCCAAGGACGTCGCGCACTCCGCTACG
GCGGCAGTAGGAGGAGAAAACATTCTGGGACAGCACAGGGGGGAACGCAA
GGCAGCGGATCGATGCTCTGGGATCGGAACCGACGGGGGTCCTGTCGAGG
CGTACTGGGGTAGTGACTATTGCACATCGATGTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig891:880..3314+

>mRNA_E_fasciculatus_S2_contig891.17011.1 ID=mRNA_E_fasciculatus_S2_contig891.17011.1|Name=mRNA_E_fasciculatus_S2_contig891.17011.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=2028bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig891:880..3314+ (Ectocarpus fasciculatus EfasUO2)
ATGGCCGGCAGTAGTGGATTCGGTGATAGGAAGCCTGAAAGGGACGTGCG
AGTGACCAGAAGATGCCCCGATGCAGCGATAACGAACAAACCACATCGTG
GCAGCAGCACCACAAGCAGAGAGAGCACCAACAAGGGCGGTAGTGGTGCT
TCGACGGAGACCTTGTCCACCCGTGGCAATCGCTCCGAGAGCGATGTTTT
AGGGACTCCTTTGGTCCGCGAAAACGTCTTCCTTGACACCGGCTCTGCAA
GTCTACAGAATGAGAGTCGCACGGCCATACCAAGCACCGCACGAAGTCTA
TCGTCGCCACCGCTGGGCGGTGACGATTGGTTCGCACGACCCGCCCAAGG
CGACCAAGAAGTGCACTCGCAACTTGAAAGAGAAGAGGACGAAGCCGTCC
AATATAACGATGACGACACCGCCGCCGATGGTAACTCAACGAAAACGGAC
GGGGGCGGAACCTGTACAGAGCACAGTTCTCCCTACAGTTCGAGGGCCGG
CCACGACAGTCATGGCAGCGATTTGTCTCGAAGCACGCGGGGGACCTTTG
ATACGGTTTCTGATCTCTCTTGCTCCGGGATCTTTCCCGGACTTAGCGCT
GTGGGTGACCAAGAGAGCGCCCAGGACTCCTCCAGCGTGTCACCTAACCT
CGCTCGTTTGGCGGCTTCTCCTGGTGGTGATGGTCAGGACAGTGACGACA
TTGAGGATAGCCATATCACTCATCTTGTCCAAGATAGACGTCGGTGGCAG
CTTCGAGCTTTCGAAGCCGAGTACGAGCTAGCCTCGATGCGATCCTTCCG
TGCTCATTTGGATAGCGGCGGCGACGAAACCAGGGGGGAGGGATCGCGAC
CACTAGAATCAACAGAACACCAAGACTCTTGCTCCGCCACCACGCAAGCA
CCTGCAAACTCCAAAGAACAGCTTTTTTCGGGAGTGCCACCGATTGAGGT
CGATCATGAGTCTAATGGCCAATGGCTATCGCAGACAGTGGACCAACCGT
CTTCCTCAGCCTCTTCATCCTCCACAGGCAGGCGAAGCGTGGAAGCACCT
CGGTCGGTGGTGGGCGTCTTGAGTGCCGCCAACGGAACCCAGGTCTTAGA
GGCAGGGTCGGCACAAAGCAACCATTTTGCAGCGAACAGAATCGGGTGCG
AAACAACCAGTGATTCAAACGACTTGTCCCAGCATGTCGGTAGCGATGAT
GATGGGGGCCATGGCAAATTCTTGGGCGTTGTCGATAACGACGATGAACA
AGAAAATAACAGGACGGGTAGTCACTGTCTACTACGGGAGGAAATTACCC
ACTTGAAGGAGAATCTTCGACAAGCGGAACTTCGGGAGGCGGCGGCAGAG
GCTACCATTACGAGTGTCACACAGCGAGCGCGGGCGGCCGAGGTGTCTCG
TGAGGTCAAAGAAATCCAGCAGATCCGAAACCTCGAGATCAGGCTCGCCA
GGCGTACGAACAACGACAACAACCACCAAAAGGCATGCGTGCGCTGGAGG
GGGCGACAATTCTCGGGTGGCAGTGAGAACGTGGATGTTAGCACGAACCT
CGATTTCTCCCGGCCACAGCACGAGGTATTTCCAGTGAACGAAGAGGAGG
AGGAACACCCATCGTCGCCGTGTGACTCTGTAAAAAACAACCACGGGTGC
CCCCCTTCTATGATACCGACTGATGCGCATCGTCGCAGCCCCATCTCGGC
CGACCGTACCATTCATGGACCTACTGGACCCGACCTGCTGCCCGCCAAAA
GGGAAAGTGCTCGGCGGGCAATGCGAATTTTCCGCCAGAGCTGTGTTGAT
ATCGGGGCACGAGCAACGAGGGCAGGTGGTGTGGTATCGGCAGCAGCGGC
AGCTGTAAGCGAGACCGCCAAGGACGTCGCGCACTCCGCTACGGCGGCAG
TAGGAGGAGAAAACATTCTGGGACAGCACAGGGGGGAACGCAAGGCAGCG
GATCGATGCTCTGGGATCGGAACCGACGGGGGTCCTGTCGAGGCGTACTG
GGGTAGTGACTATTGCACATCGATGTGA
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