mRNA_E_fasciculatus_S2_contig890.17007.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig890.17007.1
Unique NamemRNA_E_fasciculatus_S2_contig890.17007.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig890.17007.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS00_ECTSI)

HSP 1 Score: 328 bits (840), Expect = 8.400e-110
Identity = 155/163 (95.09%), Postives = 158/163 (96.93%), Query Frame = 1
Query:    1 ILWASNRLYAHAVAGEMNRATWVFGCIGLCLMSEKEVVEFIFNTCKVTEGGELEVGELDRLAKSLHLSNDAFWPAFSQQLEDINKSHQNGDLIMTLGFFQDMHHKYPMILYPALRVQELVQRRTLGLRAWGRINNRLDNYLVRQKRKANAKPCCLWVLFGLKR 489
            +LWASNRLYAHAVAGEMNRATWVFGCIGLCLMSE+EVV+FIFNTCKVTE GELEVGELDRLAKSLHLSNDAFWPAFSQQLEDINKSHQNGDLIMTL FFQDMHHKYPMILYPALRVQELVQRRTLGLRAWGRINNRLDNYLVRQKR AN KPCCLWVL GLKR
Sbjct:  263 VLWASNRLYAHAVAGEMNRATWVFGCIGLCLMSEREVVDFIFNTCKVTEAGELEVGELDRLAKSLHLSNDAFWPAFSQQLEDINKSHQNGDLIMTLDFFQDMHHKYPMILYPALRVQELVQRRTLGLRAWGRINNRLDNYLVRQKRNANRKPCCLWVLLGLKR 425          
BLAST of mRNA_E_fasciculatus_S2_contig890.17007.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDV3_9PHAE)

HSP 1 Score: 239 bits (610), Expect = 1.080e-76
Identity = 113/117 (96.58%), Postives = 114/117 (97.44%), Query Frame = 1
Query:    1 ILWASNRLYAHAVAGEMNRATWVFGCIGLCLMSEKEVVEFIFNTCKVTEGGELEVGELDRLAKSLHLSNDAFWPAFSQQLEDINKSHQNGDLIMTLGFFQDMHHKYPMILYPALRVQ 351
            +LWASNRLYAHAVAGEMNRATWVFGCIGLCLMSEKEVVEFIFNTCKVTE GELEVGELDRLAK LHLSNDAFWPAFSQQLEDINKSHQNGDLIMTL FFQDMHHKYPMILYPALRVQ
Sbjct:  168 VLWASNRLYAHAVAGEMNRATWVFGCIGLCLMSEKEVVEFIFNTCKVTEAGELEVGELDRLAKGLHLSNDAFWPAFSQQLEDINKSHQNGDLIMTLDFFQDMHHKYPMILYPALRVQ 284          
BLAST of mRNA_E_fasciculatus_S2_contig890.17007.1 vs.
Match: Uncharacterized (protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QZZ7_SAPDV)

HSP 1 Score: 73.6 bits (179), Expect = 5.870e-13
Identity = 39/130 (30.00%), Postives = 70/130 (53.85%), Query Frame = 1
Query:   88 CLMSEKEVVEFIFNTCKVTEGGELEVGELDRLAKSLHLSNDAFWPAFSQQLEDINKSHQNGDLIMTLGFFQDMHHKYPMILYPALRVQELVQRRTLGLRAWGRINNRLDNYLVRQKRKANAKPCCLWVLF 477
            C+ S +E+++F F+T      G L+  E   LAK +H     F   F++ L + +    +GD  +T   FQ +  +YPM+L+PA R+Q+ +QR +LGL  W +I+ R  + +  +  +   +P C +  +
Sbjct:   91 CMRSREEILQFAFDTFDDDASGSLDELEFTELAKMMHDGKPVFASNFNKALAEFDT---HGDGTITFAAFQQISKRYPMVLFPAFRLQDQMQRMSLGLNHWHKIHMRYFDVISMEVYRVR-RPLCRYAAY 216          
BLAST of mRNA_E_fasciculatus_S2_contig890.17007.1 vs.
Match: Uncharacterized (protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CTA2_SAPPC)

HSP 1 Score: 73.2 bits (178), Expect = 2.540e-12
Identity = 42/127 (33.07%), Postives = 69/127 (54.33%), Query Frame = 1
Query:   88 CLMSEKEVVEFIFNTCKVTEGGELEVGELDRLAKSLHLSNDAFWPAFSQQLEDINKSHQNGDLIMTLGFFQDMHHKYPMILYPALRVQELVQRRTLGLRAWGRINNRLDNYL----VRQKRKANAKP 456
            C+ S +E+++F F+T      G L+  E   LAK +H     F   F++ L + +    +GD I+T   FQ +  +YPM+L+PA R+Q+ +QR +LGL  W +I+ R  + +     R+K    A P
Sbjct:  170 CMRSREEILQFAFDTFDDDASGSLDELEFMELAKMMHDGKPVFASNFNKALAEFDT---HGDGIITFAAFQQISKRYPMLLFPAFRLQDQMQRMSLGLNHWHKIHVRYFDVVSMEAYRKKHNGAAPP 293          
BLAST of mRNA_E_fasciculatus_S2_contig890.17007.1 vs.
Match: Uncharacterized (protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YT49_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 9.760e-9
Identity = 42/128 (32.81%), Postives = 65/128 (50.78%), Query Frame = 1
Query:  124 FNTCKVTEGGELEVGELDRLAKSLHLSNDAFWPAFSQQLEDINKSHQNGDLIMTLGFFQDMHHKYPMILYPALRVQELVQRRTLGLRAWGRINNRLDNYL----VRQKRKANAKPCC----LWVLFGL 483
            F+T      G L+      LA ++H     F   F + L++ + +   GD ++T   FQ +  +YPMIL+P  R+Q+ +QR +LG+  W RI+NR   YL     R+K    A P      L +LFG+
Sbjct:  182 FDTFDDDCSGTLDENTFIELANTMHEGKPIFSGNFKKALKEYDTA---GDGLVTFAAFQQISKRYPMILFPCFRLQDQMQRMSLGIPHWLRIHNRYFEYLSMEVYRKKHNGAAPPIPTIKKLKLLFGM 306          
BLAST of mRNA_E_fasciculatus_S2_contig890.17007.1 vs.
Match: Aste57867_11925 (protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KUA1_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.100e-8
Identity = 37/141 (26.24%), Postives = 69/141 (48.94%), Query Frame = 1
Query:   43 GEMNRATWVFGCIGLCLMSEKEVVEFIFNTCKVTEGGELEVGELDRLAKSLHLSNDAFWPAFSQQLEDINKSHQNGDLIMTLGFFQDMHHKYPMILYPALRVQELVQRRTLGLRAWGRINNRLDNYLVR---QKRKANAKP 456
            G ++   +V      C+ +  E+++F F      E G ++  E   +A  ++  +  F   + + + D +K   N D ++    FQ ++ +YPM+ +P  R+QE +Q+ TLG+  W R++ R    L     +KR A A P
Sbjct:  188 GVIDFEEFVHALTTYCMYTRDEILKFAFECFDTDESGSIDEMEFKIMAGMINDGSPLFRINYEKAMHDFDK---NNDGVLDFDEFQLLNKRYPMLFFPCFRMQEAMQKATLGVAHWLRLHERYFEVLKEDAYRKRHAGAAP 325          
BLAST of mRNA_E_fasciculatus_S2_contig890.17007.1 vs.
Match: Uncharacterized (protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YRU7_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.560e-8
Identity = 36/115 (31.30%), Postives = 59/115 (51.30%), Query Frame = 1
Query:  124 FNTCKVTEGGELEVGELDRLAKSLHLSNDAFWPAFSQQLEDINKSHQNGDLIMTLGFFQDMHHKYPMILYPALRVQELVQRRTLGLRAWGRINNR----LDNYLVRQKRKANAKP 456
            F+T      G L+  E   LA  +H     F   F + L + +    +GD I+T   FQ ++ +YPM+L+P  R+Q+ +QR +LG+  W +I+NR    L   + R++    A P
Sbjct:  231 FDTFDDDASGSLDEVEFTELANMMHEGRPVFAMNFKKALTEFDT---HGDGIITFAAFQQINKRYPMVLFPCFRLQDQMQRMSLGINHWLKIHNRYFELLSTEVYRRRHNGAAPP 342          
BLAST of mRNA_E_fasciculatus_S2_contig890.17007.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BP87_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.570e-8
Identity = 39/122 (31.97%), Postives = 61/122 (50.00%), Query Frame = 1
Query:   43 GEMNRATWVFGCIGLCLMSEKEVVEFIFNTCKVTEGGELEVGELDRLAKSLHLSNDAFWPAFSQQLEDINKSHQNGDLIMTLGFFQDMHHKYPMILYPALRVQELVQRRTLGLRAWGRINNR 408
            G+++   ++     +C  S+ E++ FIF T      G + V EL  L  ++     A +P  S  +  +N    N D  +  G F  M  KYP+I +PA+R+Q+  QR+TLG   W RI  R
Sbjct:   67 GQLDFNEFLLASALVCSFSKDELLGFIFETFDEDNSGIISVDELKNLVDAILTMGSALFP--SDFMSVMNSFDANNDGGIDYGEFLTMSKKYPVIFFPAMRMQDTFQRKTLG-DTWIRIEER 185          
BLAST of mRNA_E_fasciculatus_S2_contig890.17007.1 vs.
Match: Calcium-dependent (protein kinase 22 n=8 Tax=Phytophthora TaxID=4783 RepID=A0A0W8CCK3_PHYNI)

HSP 1 Score: 61.6 bits (148), Expect = 3.000e-8
Identity = 34/132 (25.76%), Postives = 67/132 (50.76%), Query Frame = 1
Query:   88 CLMSEKEVVEFIFNTCKVTEGGELEVGELDRLAKSLHLSNDAFWPAFSQQLEDINKSHQNGDLIMTLGFFQDMHHKYPMILYPALRVQELVQRRTLGLRAWGRINNRLDNYLVRQKRKANAKPCCLWVLFGL 483
            C+ +  E++ F F+T      G +   EL RL   ++     F    +  L + ++   N D ++    F+ ++ ++PM+L+P  R+Q+ +Q+ TLG   W +++ RL   L  +  +  A P  ++ LFG+
Sbjct:  152 CMYTRDEILRFAFDTFDPAASGSIGDKELRRLVSIVNDGQSRFSGNINNALTEFDR---NKDGVIDFEEFKSLNKRFPMLLFPCFRLQDRMQKATLGDSHWLQLHKRLYERLKTENYQVWAHPIGIYPLFGI 280          
BLAST of mRNA_E_fasciculatus_S2_contig890.17007.1 vs.
Match: Hypothetical (protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZNR4_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 3.980e-8
Identity = 36/145 (24.83%), Postives = 73/145 (50.34%), Query Frame = 1
Query:   64 WVFGCIGLCLMSEKEVVEFIFNTCKVTEGGELEVGELDRLAKSLHLSNDAFWPAFSQQLEDINKSHQNGDLIMTLGFFQDMHHKYPMILYPALRVQELVQRRTLGLRAWGRINNRLDNYLVRQK----RKANAKPCCLWVLFGLK 486
            +V   +  C+ ++ ++++F F+   +  GG ++  E   +  ++   +  F   F   LE+ +    N D ++    F++++ +YPMIL+PA R+Q+ +Q+ TLG   W ++   + NY  + K    ++  A P   W  F  K
Sbjct:  189 YVAVALSYCMYTKDDILKFCFDLFDLDSGGTIDEKEFTEMCVAVSAGDPLFSGNFRMALENFDT---NDDGLIDFDEFRNLNDRYPMILHPAFRMQDKLQKYTLGEEEWVKVMENI-NYWQKIKEYTDKEGEAPPSSRWERFREK 329          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig890.17007.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized8.400e-11095.09protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.080e-7696.58protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized5.870e-1330.00protein n=1 Tax=Saprolegnia diclina (strain VS20) ... [more]
Uncharacterized2.540e-1233.07protein n=1 Tax=Saprolegnia parasitica (strain CBS... [more]
Uncharacterized9.760e-932.81protein n=1 Tax=Thraustotheca clavata TaxID=74557 ... [more]
Aste57867_119251.100e-826.24protein n=1 Tax=Aphanomyces stellatus TaxID=120398... [more]
Uncharacterized1.560e-831.30protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepI... [more]
Hypothetical1.570e-831.97protein n=1 Tax=Dictyocha speculum TaxID=35687 Rep... [more]
Calcium-dependent3.000e-825.76protein kinase 22 n=8 Tax=Phytophthora TaxID=4783 ... [more]
Hypothetical3.980e-824.83protein n=1 Tax=Pelagomonas calceolata TaxID=35677... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig890contigE_fasciculatus_S2_contig890:15052..16958 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score74.7
Seed ortholog evalue4.5e-11
Seed eggNOG ortholog112098.XP_008606902.1
Model size492
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG0032@1,KOG0032@2759
Cds size492
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842544.9607792-CDS-E_fasciculatus_S2_contig890:15051..151921696842544.9607792-CDS-E_fasciculatus_S2_contig890:15051..15192Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig890 15052..15192 -
1696842544.9728742-CDS-E_fasciculatus_S2_contig890:16096..163451696842544.9728742-CDS-E_fasciculatus_S2_contig890:16096..16345Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig890 16097..16345 -
1696842544.983053-CDS-E_fasciculatus_S2_contig890:16856..169581696842544.983053-CDS-E_fasciculatus_S2_contig890:16856..16958Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig890 16857..16958 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig890.17007.1prot_E_fasciculatus_S2_contig890.17007.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig890 15052..16958 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig890.17007.1

>prot_E_fasciculatus_S2_contig890.17007.1 ID=prot_E_fasciculatus_S2_contig890.17007.1|Name=mRNA_E_fasciculatus_S2_contig890.17007.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=164bp
ILWASNRLYAHAVAGEMNRATWVFGCIGLCLMSEKEVVEFIFNTCKVTEG
GELEVGELDRLAKSLHLSNDAFWPAFSQQLEDINKSHQNGDLIMTLGFFQ
DMHHKYPMILYPALRVQELVQRRTLGLRAWGRINNRLDNYLVRQKRKANA
KPCCLWVLFGLKR*
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mRNA from alignment at E_fasciculatus_S2_contig890:15052..16958-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig890.17007.1 ID=mRNA_E_fasciculatus_S2_contig890.17007.1|Name=mRNA_E_fasciculatus_S2_contig890.17007.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1907bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig890:15052..16958- (Ectocarpus fasciculatus EfasUO2)
ATTCTTTGGGCGAGCAACCGATTGTACGCCCACGCTGTCGCCGGTGAGAT GAACCGCGCCACGTGGGTGTTTGGGTGTATTGGCCTCTGTCTCATGTCGG AGGTGAGAACAGGGTCGACGAGAAATCTGCTTACAATACAAACGCTGTCC GGCCATGGAAAACCACGCGTATTTTCTGGTCCAGCTCACCCACCTCGAGC TCTGGCACAATATTGCCCCACTACGAAAATACCACTCGCCTACTCTAGGA CAAAATGTATGTATTTTTGGTCAGCTACGATAAGACCCCCGCCTGCGGAC AAAGAAGCACACACCTCACCCCATGGGCGGTCAGCCTCGTCCCCCCCCCC CCCCCCCACCCACCCCAAACAACCAAAACACCCCAACAAACCACAAACCA ACCACCACCCCCCAAAACAAACCCACNNNNNNNNNNAAAAAAATATATTT TTTTTTGTTCACCAAAAAAAAACCCCCCCCCGGCGAAAAAAAAACCCCCC CCCCCCCCCCCTGGGGGGCCCCCCCCCCCCCCCCCCCCCCCCCCACTCGT TCTGAGCAACAAATCTCCCCCCCAAAAACCTGCATGACCCCTCTCCCCGC CTCTCAACGACAGAAAGAAGTGGTGGAGTTCATCTTCAACACCTGCAAGG TGACGGAAGGCGGAGAGCTCGAGGTGGGTGAGCTGGACCGGCTCGCGAAG AGCCTCCACCTCTCGAACGACGCCTTTTGGCCGGCGTTCTCCCAGCAGCT GGAAGACATCAACAAGTCTCACCAGAACGGGGACCTCATCATGACCCTTG GCTTCTTCCAAGACATGCACCACAAGTACCCCATGATCCTTTACCCGGCG TTGCGCGTTCAGGTGAGCAGTTTATTTCCAGAAGGGCTGTTTCGTAGACG ACTTTCAAGCGCCATTCGGCCAACCACCGGACATACACCAGGAATACTGC ACGTGTGGTGGAGGTCAGCGAGGGCGTACGAAACCAAAGGCGATAGTGCT CGTTTATTGTTGGCCTAATAATCGTGTTCAATGAACAGGCGTATGGATTA AGAATGGGCCACCGATCTTCTTTTTGTACCAAGGAAGCAGTTCCAACGCT GATCGTCGCGGACCGAGCGCCGTCGGCGGGAGGGGGGCCGTCCCTTCGCT TTCGGGACAGACTTTCCCTGAAACACACACTAAACCGAGTTGAGGTAGCT CAAGAGCCCTTTTGTTTGGTTTTATTAGAGGGTGGGCGAGGGTCGCCGGG TGAAAAAATGCGCGCCCTACGGTAGCCTGCATGGCATCCCCAACCATCAA TAATTTGGATAGGCATGCGTGTCGTCAGCACAAGCAAATGTCAGGGTTTC AAAAGCCACCCACGCTTCAAGACGTTCTTTTGGGCGGGTTTGGCGTCGAC TACGAGATTGCTGGTGCCCACGTTCTTGGTGCCATCAGAGCGAACTACGC TCGTACAGACGCCATTTTCTACGTCCGTTTTGTACCCAACCATTCAATTC GTTTCGTTGTCGGCGAAGCGAAGCGAAAGCCTCCCGTATTCATTTATTCG CGGGTGGGTGTGATACAGTGCTTCCGACGGTCGATGGCGTTCGACCACGT CCAGAAATGCGGCGGAATGTGGATGCACATCCGGGAGTACGTGGGGGGGG CGGTGTGACCTGCTAGGCCAGCCTGGACTAATTTGTTTGCGCCTCACTAC TGCCCTTCTTCCTGCCGTCTCGCCATTTTTTTCCCACACCGAAAATCCCC CTCGTTGATGCTGCAGGAGCTGGTTCAGCGGAGAACGCTCGGACTGCGTG CTTGGGGGCGGATAAACAATAGATTAGACAACTACCTTGTAAGACAGAAG CGCAAAGCCAACGCAAAACCATGCTGTCTGTGGGTTCTCTTTGGCTTGAA AAGATAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig890:15052..16958-

>mRNA_E_fasciculatus_S2_contig890.17007.1 ID=mRNA_E_fasciculatus_S2_contig890.17007.1|Name=mRNA_E_fasciculatus_S2_contig890.17007.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=492bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig890:15052..16958- (Ectocarpus fasciculatus EfasUO2)
ATTCTTTGGGCGAGCAACCGATTGTACGCCCACGCTGTCGCCGGTGAGAT
GAACCGCGCCACGTGGGTGTTTGGGTGTATTGGCCTCTGTCTCATGTCGG
AGAAAGAAGTGGTGGAGTTCATCTTCAACACCTGCAAGGTGACGGAAGGC
GGAGAGCTCGAGGTGGGTGAGCTGGACCGGCTCGCGAAGAGCCTCCACCT
CTCGAACGACGCCTTTTGGCCGGCGTTCTCCCAGCAGCTGGAAGACATCA
ACAAGTCTCACCAGAACGGGGACCTCATCATGACCCTTGGCTTCTTCCAA
GACATGCACCACAAGTACCCCATGATCCTTTACCCGGCGTTGCGCGTTCA
GGAGCTGGTTCAGCGGAGAACGCTCGGACTGCGTGCTTGGGGGCGGATAA
ACAATAGATTAGACAACTACCTTGTAAGACAGAAGCGCAAAGCCAACGCA
AAACCATGCTGTCTGTGGGTTCTCTTTGGCTTGAAAAGATAA
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