mRNA_E_fasciculatus_S2_contig8878.16980.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8878.16980.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJE4_ECTSI) HSP 1 Score: 714 bits (1844), Expect = 2.370e-252 Identity = 337/411 (82.00%), Postives = 363/411 (88.32%), Query Frame = 1
Query: 157 QGQTEPTGFVVIDKSETASAPVTGGRRASASIAVALPEQLALGKGSGGVWNASERGRTASREQQADECPPCETMFGKLNGADQHVELQLRGEPKSGTSFMFEWAVNALMVTCEELRRLYGESTCTVGWRSMFSRRKPKPVTPETALIDMKEVFFVFMPSRLHGRIPPGGPSAAPCPCSTVNKVSIAVSSLFKHDLPVPPNCPWQHVDNITPENKGCTTVNGRRVGNYADTVECLHQHPCRITDDRIQMLILRDPRAVVVSAFFYLKWHPAASKKYRRDESVDSFVLRMLPTMCHFIHLRYLLLHEKLDGRTVEFTYDESLADPFQWHQRWLSSVGLTPPPAVVLKATNTSVRREYGFVGKGVDKHPGGKEVTEKRTWEDEISHEVAEQLDDICREWLPPVLLEKFGIGAPP 1389
+GQT+PTGF D S SAP+ GGRRASASIAV+LPEQL++ KGSGG W++ E G T R+ QADECPPCETMFGKLNGA QHVELQLRGEPKSGTSFMFEWAVNALMVTCEEL RLYGE TCT WR FSRRK KPV+PETAL+DMKEVFFVF P+R HGR GGPSA+PCPCSTV+KVSI VSSLFKHDLPVPP+CPWQHVDN+TPENKGCTTVNGRRVGNY DTVECL QHPCRI DDRIQMLILRDPRAV VS+FF+LK H K+ DESVDSFVLRMLPT+CHFIHLRYL+LHEKL G+TVEFTYDESLADP QWHQRWLSSVGLTPPP VVL+ATNTS+RREYGF GKGVDKHPGGKE TEKRTWEDEISH+VAEQL+ ICREWLPPVLLEKFGIGAPP
Sbjct: 16 RGQTQPTGFAATDNSGATSAPIAGGRRASASIAVSLPEQLSISKGSGGAWSSLETGSTGLRKLQADECPPCETMFGKLNGAQQHVELQLRGEPKSGTSFMFEWAVNALMVTCEELGRLYGEGTCTFRWRGFFSRRKQKPVSPETALVDMKEVFFVFKPNRQHGRSSAGGPSASPCPCSTVDKVSIMVSSLFKHDLPVPPSCPWQHVDNVTPENKGCTTVNGRRVGNYTDTVECLQQHPCRIVDDRIQMLILRDPRAVAVSSFFHLKTHHHPFWKHLTDESVDSFVLRMLPTICHFIHLRYLVLHEKLGGKTVEFTYDESLADPLQWHQRWLSSVGLTPPPGVVLQATNTSLRREYGFAGKGVDKHPGGKEATEKRTWEDEISHDVAEQLEGICREWLPPVLLEKFGIGAPP 426
BLAST of mRNA_E_fasciculatus_S2_contig8878.16980.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPP2_9PHAE) HSP 1 Score: 303 bits (775), Expect = 7.080e-95 Identity = 152/202 (75.25%), Postives = 161/202 (79.70%), Query Frame = 1
Query: 118 MYVPRDLLPASPGQGQTEPTGFVVIDKSETASAPVTGGRRASASIAVALPEQLALGKGSGGVWNASERGRTASREQQADECPPCETMFGKLNGADQHVELQLRG-------EPKSGTSFMFEWAVNALMVTCEELRRLYGESTCTVGWRSMFSRRKPKPVTPETALIDMKEVFFVFMPSRLHGRIPPGGPSAAPCPCSTVNK 702
M+VPRDLLP SPGQGQT+PTGF D S+ APV GGRRASASIAVALPEQLA+GKGSGG W +SE G T R+ Q DECPPCETMFGKLNGA QHVELQLRG EPKSGT FMFEWAVNALMVTCEEL RLYGE TCTV R FSRRKPKPVTPETAL DMKEV FV P+R GR GGPSA+PCPCSTV+K
Sbjct: 1 MHVPRDLLPTSPGQGQTQPTGFAATDSSDATFAPVAGGRRASASIAVALPEQLAIGKGSGGAWISSESGSTGLRKLQGDECPPCETMFGKLNGAQQHVELQLRGASRIQYQEPKSGTGFMFEWAVNALMVTCEELGRLYGEGTCTVRGRRPFSRRKPKPVTPETALDDMKEVIFVINPNRQDGRSSAGGPSASPCPCSTVDK 202
BLAST of mRNA_E_fasciculatus_S2_contig8878.16980.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP89_9PHAE) HSP 1 Score: 281 bits (720), Expect = 2.140e-87 Identity = 132/152 (86.84%), Postives = 140/152 (92.11%), Query Frame = 1
Query: 934 SAFFYLKWHPAASKKYRRDESVDSFVLRMLPTMCHFIHLRYLLLHEKLDGRTVEFTYDESLADPFQWHQRWLSSVGLTPPPAVVLKATNTSVRREYGFVGKGVDKHPGGKEVTEKRTWEDEISHEVAEQLDDICREWLPPVLLEKFGIGAPP 1389
S+FF+LK H KY DESVDSFVLRMLPT+CHFIHLRYL+LHEKL G+TVEFTYDESLADP QWHQRWLSSVGLTPPPAVVL+ATNTS+RREYGFVGKGVDKHPGGKE TEKRTWEDEIS EVAEQL+DICREWLPPVLLEKFGIGAPP
Sbjct: 8 SSFFHLKTHHTPLWKYWHDESVDSFVLRMLPTICHFIHLRYLVLHEKLGGKTVEFTYDESLADPLQWHQRWLSSVGLTPPPAVVLQATNTSLRREYGFVGKGVDKHPGGKEATEKRTWEDEISREVAEQLEDICREWLPPVLLEKFGIGAPP 159
BLAST of mRNA_E_fasciculatus_S2_contig8878.16980.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDV7_9PHAE) HSP 1 Score: 178 bits (451), Expect = 1.160e-47 Identity = 95/242 (39.26%), Postives = 135/242 (55.79%), Query Frame = 1
Query: 694 VNKVSIAVSSLFKHDLPVPPNCPWQHVDNITPENKGCTTVNGRRVGNYADTVECLHQHPCRITDDRIQMLILRDPRAVVVSAFF--------YLKWHPAASKKYRRDESVDSFVLRMLPTMCHFIHLRYLLLHEKLDGRTVEFTYDESLADPFQWHQRWLSSVGLTPPPAVV--LKATNTSVRREYGFVGKGVDKHPGGKEVTEKRTWEDEISHEVAEQLDDICREWLPPVLLEKFGIGAPP 1389
+ +V I++S++ KH LPV +CPW H E GC + +G V AD C+ + PC ITD+R+Q + +RDPRAV VS +F Y K HP S+D VL +LP +CHF LR++L L RT F Y++++ DPF WH RW S GL P + + A N + K ++ HPGG E ++ RTW+DE+S + ++D I R+WLP VLL ++GI PP
Sbjct: 2 LRRVEISISTVDKHRLPVNESCPWSHGSGTVHEGDGCWSFDGHPVETGADLWACMQKTPCEITDNRLQFVPIRDPRAVAVSTYFHRVHKDNNYQKLHP----------SLDQTVLEILPVLCHFTTLRHILFGGLLSNRTELFWYEQTVEDPFDWHYRWASFAGLILPGGWIDGMVAENQA--------HKHLNPHPGGAETSDNRTWQDEVSPGIRPEMDSILRKWLPGVLLARYGI--PP 223
BLAST of mRNA_E_fasciculatus_S2_contig8878.16980.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG38_9PHAE) HSP 1 Score: 143 bits (361), Expect = 1.160e-35 Identity = 74/168 (44.05%), Postives = 104/168 (61.90%), Query Frame = 1
Query: 877 ITDDRIQMLILRDPRAVVVSAFFYLKWHPAA-SKKYRRDESVDSFVLRMLPTMCHFIHLRYLLLHEKLDGRTVEFTYDESLADPFQWHQRWLSSVGLTPPPAVVLKATNTSVRREYGFVGKGVDKHPGGKEVTEKRTWEDEISHEVAEQLDDICREWLPPVLLEKFGI 1377
+ DD +Q +LRDPRAV VS +FY+K HPA S R +S+D VL +LP +C F +R+LL +L ++ F Y++++ DP WH RW S G P A +K + ++ V + D HPGG++V+ KRTWEDEIS + E++D I R WLP VLLE+ GI
Sbjct: 25 LLDDSLQFAVLRDPRAVAVSTYFYVKSHPAFYSDHVSRGKSLDEAVLLILPQLCQFTTIRHLLFDGQLSDKSEIFWYEDAMRDPLGWHYRWASFAGFALP-ASWIKDIDATLPEAQQKVKR--DPHPGGQQVSSKRTWEDEISPAIREEMDSILRTWLPGVLLERLGI 189
BLAST of mRNA_E_fasciculatus_S2_contig8878.16980.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T4_ECTSI) HSP 1 Score: 117 bits (293), Expect = 7.600e-27 Identity = 62/159 (38.99%), Postives = 92/159 (57.86%), Query Frame = 1
Query: 907 LRDPRAVVVSAFFYLKWHPAASKKYRRDESVDSFVLRMLPTMCHFIHLRYLLLHEKLDGRTVEFTYDESLADPFQWHQRWLSSVGLTPPPAVVLKATNTSVRREYGFVGKGVDKHPGGKEVTEKRTWEDEISHEVAEQLDDICREWLPPVLLEKFGIGA 1383
+RDPRAV VS +FY+K P R +S+D V+ +LP +C F +R++L +L R+ F Y++++ DP W+ RW S G T P A +K S+ E + + HPGG+ V+ RTWEDE+S E +++ I R WLP VLL +F + A
Sbjct: 1 MRDPRAVAVSTYFYIKRSPIHLHHPSRGKSLDEAVVVILPQICQFTTIRHILFDGQLSDRSEIFWYEDAMRDPLGWYNRWASLAGFTLP-ARWIKDIQASLT-EAAENDRKREPHPGGQVVSSDRTWEDEVSPETRLEMNSILRTWLPGVLLARFDVPA 157 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8878.16980.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8878.16980.1 >prot_E_fasciculatus_S2_contig8878.16980.1 ID=prot_E_fasciculatus_S2_contig8878.16980.1|Name=mRNA_E_fasciculatus_S2_contig8878.16980.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=425bp MYVPRDLLPASPGQGQTEPTGFVVIDKSETASAPVTGGRRASASIAVALPback to top mRNA from alignment at E_fasciculatus_S2_contig8878:2241..5579+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig8878.16980.1 ID=mRNA_E_fasciculatus_S2_contig8878.16980.1|Name=mRNA_E_fasciculatus_S2_contig8878.16980.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3339bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8878:2241..5579+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8878:2241..5579+ >mRNA_E_fasciculatus_S2_contig8878.16980.1 ID=mRNA_E_fasciculatus_S2_contig8878.16980.1|Name=mRNA_E_fasciculatus_S2_contig8878.16980.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1275bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8878:2241..5579+ (Ectocarpus fasciculatus EfasUO2)back to top |