mRNA_E_fasciculatus_S2_contig8876.16978.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8876.16978.1
Unique NamemRNA_E_fasciculatus_S2_contig8876.16978.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8876.16978.1 vs.
Match: Kinesin (motor domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGN2_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 5.690e-26
Identity = 87/137 (63.50%), Postives = 92/137 (67.15%), Query Frame = -2 
Query:   66 EEDGDGGGDEAPPSPGRQQHSRDSPPLLDQEKAGQELDNAKRGREGDDDGGSDTD---GSSAPDASDRSDSSAAASDEVREPXXXXXXXXXXXXXXSTRLMMRRESTSESASGVVVAEDSXXRSKKVGGFFKRSKKK 467
            EE+GD GGD+  PSPGR+QHSRDSPPL DQE  GQ L NAKRGREGD       D    SSAP ASDRSDSSAAASD+V EP              STRLM RRESTSES S  V A  S  R+KK GGFFKRSKKK
Sbjct: 1253 EENGDEGGDKGLPSPGRRQHSRDSPPLPDQETTGQGLVNAKRGREGDGXXXXXXDTXXSSSAPGASDRSDSSAAASDKVWEPGKNPSKSRSK----STRLM-RRESTSESGS--VTAGSS--RNKKAGGFFKRSKKK 1380
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BLAST of mRNA_E_fasciculatus_S2_contig8876.16978.1 vs.
Match: Cytochrome (c oxidase subunit 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8G1_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 5.220e-6
Identity = 59/117 (50.43%), Postives = 65/117 (55.56%), Query Frame = -2 
Query:  117 EDGDGGGDEAPPSPGRQQHSRDSPPLLDQEKAGQELDNAKRGREGDDDGGSDTDGSSAPDASDRS-DSSAAASDEVREPXXXXXXXXXXXXXXSTRLMMRRESTSESASGVVVAEDS 464
            E+GD GGD+  PSPGRQQHS DS    DQEKA Q+L +AKRGR+G                     DSSA ASD+V EP              STRLM RRESTSESAS VV A  S
Sbjct:  707 ENGDEGGDKGLPSPGRQQHSWDSLTWPDQEKARQKLVHAKRGRKGXXXXXXXXXXXXXXXXXXXXXDSSAVASDKVWEPGKNPSKSRSK----STRLM-RRESTSESAS-VVAAGSS 817
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8876.16978.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Kinesin5.690e-2663.50motor domain-containing protein n=1 Tax=Ectocarpus... [more]
Cytochrome5.220e-650.43c oxidase subunit 1 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8876contigE_fasciculatus_S2_contig8876:2631..3100 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size472
Hectar predicted targeting categorysignal peptide
Exons1
Cds size468
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842542.3277555-CDS-E_fasciculatus_S2_contig8876:2630..30981696842542.3277555-CDS-E_fasciculatus_S2_contig8876:2630..3098Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8876 2631..3098 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8876.16978.1prot_E_fasciculatus_S2_contig8876.16978.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8876 2631..3098 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8876.16978.1

>prot_E_fasciculatus_S2_contig8876.16978.1 ID=prot_E_fasciculatus_S2_contig8876.16978.1|Name=mRNA_E_fasciculatus_S2_contig8876.16978.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=156bp
VTKKSGSAYPPAVLSCKVQVFYFFLLLLKKPPTFLLLLLLSSATTTPEAL
SDVDSLRIISRVDFDLDFDLDFEGFLTGSRTSSLAAAEESERSLASGALL
PSVSLPPSSSPSRPRFALSNSCPAFSWSSSGGESRLCCCRPGDGGASSPP
PSPSSS
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mRNA from alignment at E_fasciculatus_S2_contig8876:2631..3100+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8876.16978.1 ID=mRNA_E_fasciculatus_S2_contig8876.16978.1|Name=mRNA_E_fasciculatus_S2_contig8876.16978.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=470bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8876:2631..3100+ (Ectocarpus fasciculatus EfasUO2)
GTTACAAAAAAAAGTGGTAGCGCGTACCCTCCTGCTGTGTTAAGCTGTAA
AGTTCAAGTTTTCTACTTTTTCTTGCTTCTCTTGAAGAAACCTCCCACCT
TTTTGCTTCTACTACTACTATCCTCGGCAACAACAACACCAGAAGCACTC
TCCGACGTCGACTCCCTTCGCATCATCAGCCGGGTCGATTTCGATCTTGA
TTTCGATCTTGACTTTGAGGGGTTCCTCACGGGCTCCCGAACTTCGTCGC
TCGCAGCGGCAGAAGAATCGGAGCGGTCGCTTGCATCGGGGGCGCTACTA
CCGTCGGTATCGCTGCCTCCGTCGTCGTCGCCTTCCCGGCCCCGTTTCGC
GTTGTCCAATTCCTGTCCAGCTTTTTCTTGGTCGAGCAGCGGAGGCGAGT
CCCGACTATGTTGTTGTCGACCAGGCGACGGTGGGGCCTCATCCCCCCCC
CCATCCCCGTCTTCTTCCTC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8876:2631..3100+

>mRNA_E_fasciculatus_S2_contig8876.16978.1 ID=mRNA_E_fasciculatus_S2_contig8876.16978.1|Name=mRNA_E_fasciculatus_S2_contig8876.16978.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=468bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8876:2631..3100+ (Ectocarpus fasciculatus EfasUO2)
GTTACAAAAAAAAGTGGTAGCGCGTACCCTCCTGCTGTGTTAAGCTGTAA
AGTTCAAGTTTTCTACTTTTTCTTGCTTCTCTTGAAGAAACCTCCCACCT
TTTTGCTTCTACTACTACTATCCTCGGCAACAACAACACCAGAAGCACTC
TCCGACGTCGACTCCCTTCGCATCATCAGCCGGGTCGATTTCGATCTTGA
TTTCGATCTTGACTTTGAGGGGTTCCTCACGGGCTCCCGAACTTCGTCGC
TCGCAGCGGCAGAAGAATCGGAGCGGTCGCTTGCATCGGGGGCGCTACTA
CCGTCGGTATCGCTGCCTCCGTCGTCGTCGCCTTCCCGGCCCCGTTTCGC
GTTGTCCAATTCCTGTCCAGCTTTTTCTTGGTCGAGCAGCGGAGGCGAGT
CCCGACTATGTTGTTGTCGACCAGGCGACGGTGGGGCCTCATCCCCCCCC
CCATCCCCGTCTTCTTCC
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