mRNA_E_fasciculatus_S2_contig8872.16976.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8872.16976.1
Unique NamemRNA_E_fasciculatus_S2_contig8872.16976.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8872.16976.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPW3_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 2.760e-34
Identity = 63/64 (98.44%), Postives = 63/64 (98.44%), Query Frame = 1 
Query:    1 AVLKVIHCDHPDDKTGPKLEASFEMDDVKMDFRAEQYEQALSLKDSIAALANWQTFFPYRPKTT 192
            AVLKVIHCDHPDDKTGPKLEASFEMDDVKMDFRAEQYEQALSLKDSIAALANWQTFFPYRPK T
Sbjct:  242 AVLKVIHCDHPDDKTGPKLEASFEMDDVKMDFRAEQYEQALSLKDSIAALANWQTFFPYRPKAT 305
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8872.16976.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5U0_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 4.530e-34
Identity = 62/64 (96.88%), Postives = 62/64 (96.88%), Query Frame = 1 
Query:    1 AVLKVIHCDHPDDKTGPKLEASFEMDDVKMDFRAEQYEQALSLKDSIAALANWQTFFPYRPKTT 192
            AVLKVIHCDHPDDKTGPK E SFEMDDVKMDFRAEQYEQALSLKDSIAALANWQTFFPYRPKTT
Sbjct:  246 AVLKVIHCDHPDDKTGPKFEVSFEMDDVKMDFRAEQYEQALSLKDSIAALANWQTFFPYRPKTT 309
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8872.16976.1 vs.
Match: VPS13 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC24_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 4.540e-32
Identity = 58/64 (90.62%), Postives = 58/64 (90.62%), Query Frame = 1 
Query:    1 AVLKVIHCDHPDDKTGPKLEASFEMDDVKMDFRAEQYEQALSLKDSIAALANWQTFFPYRPKTT 192
            AVLK IH D PDDKTGPK EASFEMDDVKMDFRAEQYEQALSLKDS AALANWQ FFPYRPKTT
Sbjct:  137 AVLKFIHSDDPDDKTGPKFEASFEMDDVKMDFRAEQYEQALSLKDSAAALANWQMFFPYRPKTT 200
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8872.16976.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized2.760e-3498.44protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized4.530e-3496.88protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
VPS134.540e-3290.63domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8872contigE_fasciculatus_S2_contig8872:641..1368 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score132.5
Seed ortholog evalue7e-29
Seed eggNOG ortholog2880.D8LPW3
Model size196
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
EggNOG OGsCOG5043@1,KOG1809@2759
Cds size192
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842542.1495602-CDS-E_fasciculatus_S2_contig8872:642..7621696842542.1495602-CDS-E_fasciculatus_S2_contig8872:642..762Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8872 643..762 -
1696842542.162259-CDS-E_fasciculatus_S2_contig8872:1296..13681696842542.162259-CDS-E_fasciculatus_S2_contig8872:1296..1368Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8872 1297..1368 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8872.16976.1prot_E_fasciculatus_S2_contig8872.16976.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8872 643..1368 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8872.16976.1

>prot_E_fasciculatus_S2_contig8872.16976.1 ID=prot_E_fasciculatus_S2_contig8872.16976.1|Name=mRNA_E_fasciculatus_S2_contig8872.16976.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=64bp
AVLKVIHCDHPDDKTGPKLEASFEMDDVKMDFRAEQYEQALSLKDSIAAL
ANWQTFFPYRPKTT
back to top

mRNA from alignment at E_fasciculatus_S2_contig8872:641..1368-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8872.16976.1 ID=mRNA_E_fasciculatus_S2_contig8872.16976.1|Name=mRNA_E_fasciculatus_S2_contig8872.16976.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=728bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8872:641..1368- (Ectocarpus fasciculatus EfasUO2)
GCTGTTCTGAAGGTTATTCACTGCGATCACCCCGATGACAAGACGGGGCC
CAAATTGGAGGCTTCGTTCGAGGTGGGGGTTGTAGGCGTCGTGGGCTCTA
CGGTGTGTGTGAATTGTTACTTTATGGTCTTCCTTGTTGTGGCTTTCTTG
TGTTTAATGGGTTCAGATTTTAAGCGTTTGCCCGTGATCGTTTTGTTGCT
TGTGGTTGAGGATTGGGTTCGTGCCTGTTGGCGCGTGATATTCCTGCTGT
GCGCTTATCCGTCCAAGCTGTTCCAGTCGCTGCGGGATGGTTGGCGCTTA
TTTGTTTTGTTTTTTACGGGTACGTGGTGTTGAGAACCGTGACCGTTTGC
CAAAACGACCACCGAGGCCACGTTCCAAAGCAGCGCTTGGTTTGGAGCAG
CATGAAATGAAGGATAACGGGCCGATCTCTGACGCTTAAAAAGTGTGTTG
GCTTGTAAGCAATATATCGTTGGTAATTGCAGCAGCATGTTACTGATGTT
GTGGAGGGTCGGGATCGAAAAGACTGATGATGACGTGTTGTACCGTCTGT
TTGGATGATGTAAGCCGTGTTGACGCCTCCGCCTTGTTCCTTTCGTGCTG
CATCAGATGGACGACGTCAAGATGGACTTCCGCGCGGAGCAGTACGAGCA
GGCGCTCTCCCTCAAGGACTCCATAGCGGCCCTCGCCAACTGGCAGACGT
TCTTCCCCTACCGCCCCAAGACTACCCC
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8872:641..1368-

>mRNA_E_fasciculatus_S2_contig8872.16976.1 ID=mRNA_E_fasciculatus_S2_contig8872.16976.1|Name=mRNA_E_fasciculatus_S2_contig8872.16976.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=192bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8872:641..1368- (Ectocarpus fasciculatus EfasUO2)
GCTGTTCTGAAGGTTATTCACTGCGATCACCCCGATGACAAGACGGGGCC
CAAATTGGAGGCTTCGTTCGAGATGGACGACGTCAAGATGGACTTCCGCG
CGGAGCAGTACGAGCAGGCGCTCTCCCTCAAGGACTCCATAGCGGCCCTC
GCCAACTGGCAGACGTTCTTCCCCTACCGCCCCAAGACTACC
back to top