mRNA_E_fasciculatus_S2_contig8871.16975.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8871.16975.1
Unique NamemRNA_E_fasciculatus_S2_contig8871.16975.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8871.16975.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSR2_ECTSI)

HSP 1 Score: 390 bits (1001), Expect = 2.960e-128
Identity = 237/250 (94.80%), Postives = 239/250 (95.60%), Query Frame = 1 
Query:    1 AVGNLRSSMVRNALLGVGDIFRFLKHDVGRVDIRPMIAGTLQRLAGDKRFICQTAAQAMEAAARDGPGVDVLHAILPSLDDRNAEVAAKSAFYAEQCLAALGVGSKAGVGLPEALEFRSMLPGMSRALNGKVAEGRTSARRALLRSRKAMGLGPFEAAVKASLEKAEATSLLTVLATPNRTGGGAAAGAGKGGPGRAPILQGRRGGAGPGRGGRVAARPSIREQMMAXXXXXXXXXXXXXXXXEGFVVVS 750
            AVGNLRSSMVRNALLGVGDIFRFLKHDVGRVDI PMIAGTLQRLAGDKRFICQTAAQAMEAAAR+GPG DVLHAILPSLDDRNAEVAAKSAFYAEQCLAALGVGSKAGVGLPEALEFRSMLPGMSRALNGKVAEGR SARRALLR RKAMGLGPFEAAVK+SLEKAEATSLLTVLATPNRTG  AAAGAGK GPGRAPILQGRRGGAG GRGG VAARPSIREQM  XXXXXXXXXXXXXXXXEGFVVVS
Sbjct:  523 AVGNLRSSMVRNALLGVGDIFRFLKHDVGRVDISPMIAGTLQRLAGDKRFICQTAAQAMEAAARNGPGADVLHAILPSLDDRNAEVAAKSAFYAEQCLAALGVGSKAGVGLPEALEFRSMLPGMSRALNGKVAEGRASARRALLRCRKAMGLGPFEAAVKSSLEKAEATSLLTVLATPNRTG--AAAGAGKAGPGRAPILQGRRGGAGTGRGGGVAARPSIREQMXXXXXXXXXXXXXXXXXXEGFVVVS 770
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BLAST of mRNA_E_fasciculatus_S2_contig8871.16975.1 vs.
Match: TOG (domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YDL8_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 2.550e-12
Identity = 56/180 (31.11%), Postives = 91/180 (50.56%), Query Frame = 1 
Query:   10 NLRSSMVRNALLGVGDIFRFLKHDVGRVDIRPMIAGTLQRLAGDKRFICQTAAQAMEAAARDGPGVDVLHAILPSLDDRNAEVAAKSAFYAEQCLAALGVGSKAGVGLPEALEFRSMLPGMSRALNGKVAEGRTSARRALLRSRKAMGLGPFEAAVKASLEKAEATSLLTVLATPNRTGG 549
            NLRS++ RNALL +G++F+ ++       + P++   L R   DK+F+   A  A++ A      +D+L  +LP   D+NA +  K+  Y EQCL    + S A     EA +  S +  ++  LN +   G+ +A+R L+  RK  G   FEA V A L     + +L +   P  + G
Sbjct:  133 NLRSTLARNALLCIGELFQCVRTQPYLPVLVPVL---LYRSITDKKFMQSVATTALDHALASCDPIDLLEQLLPFSTDKNAHLVTKAGHYVEQCL----IKSAAAEQPWEAAQLVSWIKDLANFLNCRDVHGKPAAKRCLILLRKTFGDATFEATVAAELSGITRSDVLKLSVAPTASRG 305
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BLAST of mRNA_E_fasciculatus_S2_contig8871.16975.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTF7_HETAK)

HSP 1 Score: 62.8 bits (151), Expect = 2.420e-8
Identity = 38/98 (38.78%), Postives = 58/98 (59.18%), Query Frame = 1 
Query:    7 GNLRSSMVRNALLGVGDIFRFLKHDV-GRVDIRPMIAGTLQRLAG-DKRFICQTAAQAMEAAARDGPGVDVLHAILPSLDDRNAEVAAKSAFYAEQCL 294
            G+LRSSM RN+LL + D+F F+   V G  ++   +   L  LAG DK+F+  TA   ++A AR  PG D + A +   +D+N EV A++   A++ L
Sbjct:   85 GSLRSSMARNSLLALEDLFDFVGGPVLGEPEVATTLVSLLLGLAGGDKKFLRGTAQSTVDALARAAPGADTVAAFVAHAEDKNTEVQAQALLRADKAL 182
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8871.16975.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XLY7_HETAK)

HSP 1 Score: 62.8 bits (151), Expect = 6.050e-8
Identity = 38/98 (38.78%), Postives = 58/98 (59.18%), Query Frame = 1 
Query:    7 GNLRSSMVRNALLGVGDIFRFLKHDV-GRVDIRPMIAGTLQRLAG-DKRFICQTAAQAMEAAARDGPGVDVLHAILPSLDDRNAEVAAKSAFYAEQCL 294
            G+LRSSM RN+LL + D+F F+   V G  ++   +   L  LAG DK+F+  TA   ++A AR  PG D + A +   +D+N EV A++   A++ L
Sbjct:  168 GSLRSSMARNSLLALEDLFDFVGGPVLGEPEVATTLVSLLLGLAGGDKKFLRGTAQSTVDALARAAPGADTVAAFVAHAEDKNTEVQAQALLRADKAL 265
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8871.16975.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Uncharacterized2.960e-12894.80protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSR2... [more]
TOG2.550e-1231.11domain-containing protein n=1 Tax=Achlya hypogyna ... [more]
Hypothetical2.420e-838.78protein (Fragment) n=1 Tax=Heterosigma akashiwo Ta... [more]
Hypothetical6.050e-838.78protein (Fragment) n=1 Tax=Heterosigma akashiwo Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8871contigE_fasciculatus_S2_contig8871:2893..5816 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score380.6
Seed ortholog evalue5.6e-103
Seed eggNOG ortholog2880.D7FSR2
Model size753
KEGG koko:K10532
KEGG ReactionR07815
KEGG Pathwayko00531,ko01100,ko04142,map00531,map01100,map04142
KEGG ModuleM00078
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001578,GO:0003008,GO:0005575,GO:0005623,GO:0005929,GO:0006935,GO:0006950,GO:0006970,GO:0006972,GO:0006996,GO:0007010,GO:0007017,GO:0007600,GO:0008150,GO:0009605,GO:0009628,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0030425,GO:0032501,GO:0035082,GO:0036477,GO:0040011,GO:0042221,GO:0042330,GO:0042995,GO:0043005,GO:0043025,GO:0043226,GO:0044085,GO:0044297,GO:0044463,GO:0044464,GO:0044782,GO:0050877,GO:0050896,GO:0060271,GO:0070925,GO:0071840,GO:0097447,GO:0097458,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1905515
Exons5
EggNOG free text desc.non-motile cilium assembly
EggNOG OGsKOG2933@1,KOG2933@2759
EC2.3.1.78
Cds size729
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8871.16975.1prot_E_fasciculatus_S2_contig8871.16975.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8871 2893..5792 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842542.0486937-CDS-E_fasciculatus_S2_contig8871:2892..32111696842542.0486937-CDS-E_fasciculatus_S2_contig8871:2892..3211Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8871 2893..3211 -
1696842542.0665157-CDS-E_fasciculatus_S2_contig8871:3961..41281696842542.0665157-CDS-E_fasciculatus_S2_contig8871:3961..4128Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8871 3962..4128 -
1696842542.084933-CDS-E_fasciculatus_S2_contig8871:4539..46351696842542.084933-CDS-E_fasciculatus_S2_contig8871:4539..4635Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8871 4540..4635 -
1696842542.0992787-CDS-E_fasciculatus_S2_contig8871:5001..51071696842542.0992787-CDS-E_fasciculatus_S2_contig8871:5001..5107Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8871 5002..5107 -
1696842542.1104443-CDS-E_fasciculatus_S2_contig8871:5751..57921696842542.1104443-CDS-E_fasciculatus_S2_contig8871:5751..5792Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8871 5752..5792 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842542.120347-UTR-E_fasciculatus_S2_contig8871:5792..58161696842542.120347-UTR-E_fasciculatus_S2_contig8871:5792..5816Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8871 5793..5816 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8871.16975.1

>prot_E_fasciculatus_S2_contig8871.16975.1 ID=prot_E_fasciculatus_S2_contig8871.16975.1|Name=mRNA_E_fasciculatus_S2_contig8871.16975.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=243bp
MVRNALLGVGDIFRFLKHDVGRVDIRPMIAGTLQRLAGDKRFICQTAAQA
MEAAARDGPGVDVLHAILPSLDDRNAEVAAKSAFYAEQCLAALGVGSKAG
VGLPEALEFRSMLPGMSRALNGKVAEGRTSARRALLRSRKAMGLGPFEAA
VKASLEKAEATSLLTVLATPNRTGGGAAAGAGKGGPGRAPILQGRRGGAG
PGRGGRVAARPSIREQMMAARRKKEQGEGGSGGGGEGFVVVS*
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mRNA from alignment at E_fasciculatus_S2_contig8871:2893..5816-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8871.16975.1 ID=mRNA_E_fasciculatus_S2_contig8871.16975.1|Name=mRNA_E_fasciculatus_S2_contig8871.16975.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2924bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8871:2893..5816- (Ectocarpus fasciculatus EfasUO2)
GCGGTGGGGAACCTCCGGTCGTCGATGGTTCGGAACGCCCTTCTCGGGGT
GGGGGACATTTTCAGGCGAGTGTGGAGAGGTCATTGTTCTAAGGTCGATG
TGTTTTTTCCTGGTGGCCCAAGGAGGGTAGGTACGTCATGAGGGATCTGG
GGAGAGAAGGCCAAGGCAGATACGCTTAGCCTACAGCAACGGCGGTAACA
AGACCACGAAACCGGCTAGCGTAAACCACCGCCCATTTTTTTGCGAAATA
CGGGGGGGATTTGGTACGTTTTGTGTGGGTGTCGTCATTTACGGCAATGT
TTCGGCGAAGGTACGCTTGTGTTGCCTAGCCCCCGCAATGAATCGCACGC
AGGTAGGAGGAGTTATGTGGTCCCTACATATGTCATTTATCGTCAGGAGC
AGCAGTCGAATTCGGCATAAACCCCGACCCTTTTTGCGCAAAGACTGTTG
CTTTCGAAGGCACGATCATGCATTCGATCCGCCAAACCAAACTAGCGAGC
TCGGCGACGGAGAAACTCACACCGCTGTTTTTTGCTTGCTGCCACCCCAT
GCGTCTGCTACCTCGGGGGTGCGTTGGGTCCGGCTTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATCTCT
ATCTCTATCTCTATCTCTCTCTCTCTCTGTTTCGCGTGAACCGACCGACG
GTCGAGCAGGTTCTTGAAGCACGACGTCGGGAGGGTGGACATCAGGCCCA
TGATAGCGGGCACGCTGCAACGCCTTGCGGGAGACAAACGCTTCATTTGC
CAAACGGCGGCTCAGGTGTGCGTGTGTACGTCGTACATAGGAGGGATTTG
TGCGTTTCGTGCAGGCAAACATACGTAACAAAGAAGAGAACAGGAAAGTA
CTTCCCATGACGTTTTTGGGCTGTTTGCTGGCATGCATGCAAGCGAGCAT
GCAAAAGATGCCGGCACAGTTTCCAGCAACTAGCTCCGTGATGCTTTCGG
GGCTTTCGGGCGTGGCATGCATATTCGCAAGCATGCGATGGGGGTCTGGT
GTTTCTGCAAACGTGTGCTGCTGTAGCTGACGGCCGGTGTGGCCACTGAC
ACCGCCCGCGCAGCAGCTTGAGAATATGACAAGAACAATCGCGTTTGACT
GAACTAACTCCCTCTGGCGACGTCAAAACAGGCGATGGAAGCGGCGGCAC
GCGACGGGCCCGGTGTGGACGTGTTGCATGCGATTCTGCCGTCCTTGGAC
GACCGCAACGCCGAAGTCGCTGCGAAGGTGTGTGTAGCGTATGTGTGTTT
GTTAGTAGCATCGACCGCGCTAACAGGCTGACTACTGAAAATACCAATTG
GAAAATACAGTCTCAGTGCGGTTGAAACACAAGCTGTTCTCTAAGGTGTG
TCCGTTTTTGTGGCATCGACCGCCCTAAACGGCTGGCAATTGAAAATACG
TCAGTCTCAGGTTGTTCGTTCTGTGTGTTCATGTTTGTGAGGCACCGACC
GCGGCAACCGGCTGACAACAGAAGAAAAATCTCTCGAAAACCGTTTTATC
CAGTACCCTCCCCCTCTCATGTCTGTGCTTTCTGTCCTTTGGCTTGTCGG
CGCAATCCTCGTGACACTTGCAGTTGAGTGCCCTCCGCCCCCCTCCGTTG
TCCATCCCGACTCTCCGTCTGCGTGCGCCCCTTTGCAGTCGGCCTTTTAC
GCGGAGCAGTGCCTGGCTGCTCTGGGCGTTGGGAGCAAGGCGGGGGTGGG
CTTGCCCGAGGCCCTGGAGTTCCGTAGCATGTTGCCCGGCATGTCACGAG
CGTTGAATGGGAAGGTCGCGGAGGGGAGGACGTCGGCCAGACGGGCGCTG
CTGAGGTGATGATTTACACTCTCCGCGAACACTTGTGGTAACAATTACAG
AATCCATTTAGACTGCTGTACTTCAATAGTTTTATGAGGGAGGTTAGTTA
TGGTAGGGTCATGCGTTAGATACGACTGTATGTGTAATGATTTTTTTTTT
CTTTTTGGTTCGTTGAGGTACGCTGGCTGGGCTCTTGGAGTCAAAAACAC
GTGAGCTCCTGTGTGAGCTGTTCGAGCTTGGGAAACGTCACTGATGACTT
CTGGCAGCTGAGTCACCCTGCTCTACGTTCACCTTGCATTACGCCTTGAT
TACACTATGCGATGCTCCGATGAGGCCACTCCGGAGGTGTGCCTTGTACA
CTCTTTATGACAATGCTCGGGTCTCACCCTTCATTTCCGAAGAAAAACAA
CAAGGCGGGCTTCCGAGTCCCATTCCACGAAACTCTTGTGCACCATGTTG
CTGGACCTCGGGTGCCCTTAAAGCGGAGATTGCTGCCACTGTTGTGTGCC
CCAGTGTGGTTTGTCATGGGGCTGTTACCGACGTTATCGATACTACACAT
CTCAGCTAACCTGTGTTGTAGTTTCGCACAAGCCGGGCAACATCATTCGT
GAACGTTTTCGTTGTCGTTGCATCATGGCGCGTCGTTTCTTATGATTATT
TCGTCTCCTGCGTCTTCCTTCTCCATATCGTTGCTGCTGCTGCTGCTGCT
GCTGCTGCTGCTGCTACTGCTGTGGCCATCGCTGCCGCTTATTTTGAATC
CGCAGGTCTCGCAAGGCCATGGGGCTCGGTCCGTTCGAGGCAGCCGTTAA
GGCATCCCTGGAGAAGGCCGAGGCGACGTCCCTCCTCACCGTATTGGCGA
CGCCCAACCGAACAGGCGGCGGCGCCGCGGCCGGGGCAGGGAAGGGCGGA
CCTGGCCGAGCGCCGATCCTGCAGGGGCGACGTGGTGGTGCGGGGCCGGG
GAGGGGTGGCAGGGTGGCGGCGCGGCCGTCTATCCGTGAGCAGATGATGG
CGGCCAGAAGAAAAAAGGAGCAAGGGGAGGGAGGCAGTGGGGGTGGGGGG
GAGGGGTTCGTAGTCGTATCTTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8871:2893..5816-

>mRNA_E_fasciculatus_S2_contig8871.16975.1 ID=mRNA_E_fasciculatus_S2_contig8871.16975.1|Name=mRNA_E_fasciculatus_S2_contig8871.16975.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=729bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8871:2893..5816- (Ectocarpus fasciculatus EfasUO2)
ATGGTTCGGAACGCCCTTCTCGGGGTGGGGGACATTTTCAGGTTCTTGAA
GCACGACGTCGGGAGGGTGGACATCAGGCCCATGATAGCGGGCACGCTGC
AACGCCTTGCGGGAGACAAACGCTTCATTTGCCAAACGGCGGCTCAGGCG
ATGGAAGCGGCGGCACGCGACGGGCCCGGTGTGGACGTGTTGCATGCGAT
TCTGCCGTCCTTGGACGACCGCAACGCCGAAGTCGCTGCGAAGTCGGCCT
TTTACGCGGAGCAGTGCCTGGCTGCTCTGGGCGTTGGGAGCAAGGCGGGG
GTGGGCTTGCCCGAGGCCCTGGAGTTCCGTAGCATGTTGCCCGGCATGTC
ACGAGCGTTGAATGGGAAGGTCGCGGAGGGGAGGACGTCGGCCAGACGGG
CGCTGCTGAGGTCTCGCAAGGCCATGGGGCTCGGTCCGTTCGAGGCAGCC
GTTAAGGCATCCCTGGAGAAGGCCGAGGCGACGTCCCTCCTCACCGTATT
GGCGACGCCCAACCGAACAGGCGGCGGCGCCGCGGCCGGGGCAGGGAAGG
GCGGACCTGGCCGAGCGCCGATCCTGCAGGGGCGACGTGGTGGTGCGGGG
CCGGGGAGGGGTGGCAGGGTGGCGGCGCGGCCGTCTATCCGTGAGCAGAT
GATGGCGGCCAGAAGAAAAAAGGAGCAAGGGGAGGGAGGCAGTGGGGGTG
GGGGGGAGGGGTTCGTAGTCGTATCTTGA
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