mRNA_E_fasciculatus_S2_contig8856.16955.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8856.16955.1
Unique NamemRNA_E_fasciculatus_S2_contig8856.16955.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8856.16955.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYM8_ECTSI)

HSP 1 Score: 197 bits (502), Expect = 2.780e-56
Identity = 103/159 (64.78%), Postives = 113/159 (71.07%), Query Frame = 2 
Query:    2 ARVCIALSIVFHAISLFAKGWFSELQRNTAFGVFAMGVLVLCVYDQYMYAIGGTAFAVCALFDIVAVLRWITGDD--------------GATAFWYALPPFLGAMTTGLGAIFSFTAVFFWKDVDDTAGLYPQIRQGSRTAELGLAPPAAHPRTPPPAY 436
            AR+CIALSIV H ISLF +GW+   QRN AFGVFA+G LVLC+YDQYMYAIGG  FAVCALFD+ AVLRWIT DD              G TA WYALPP LGA+T GLGAIFSFTAVFFW+D D TA     +    +T ELGLAP AAHP  PP AY
Sbjct:   14 ARLCIALSIVIHTISLFVEGWYWPWQRNAAFGVFAVGGLVLCIYDQYMYAIGGVGFAVCALFDLFAVLRWITDDDNIVEGDDSFDGSSEGTTALWYALPPLLGAITMGLGAIFSFTAVFFWEDGDCTA-----MPHEGKTVELGLAPIAAHPGAPPRAY 167
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BLAST of mRNA_E_fasciculatus_S2_contig8856.16955.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWS2_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 8.140e-38
Identity = 85/180 (47.22%), Postives = 100/180 (55.56%), Query Frame = 2 
Query:    2 ARVCIALSIVFHAISLFAKGWFSELQRNTAFGVFAMGVLVLCVYDQYMYAIGGTAFAVCALFDIVAVLRWITGDD-------------------------GATAFWYALPPFLGAMTTGLGAIFSFTAVFFWKDVDDTAGLY--------------PQIRQGSRTAELGLAPPAAHPRTP 424
            AR C  LSIV HAIS +  G F   QRN  F  F MG L+LC Y++YMY IG   FA+CA+FD++AVLRWIT DD                              W A+PPFLGA+  GLGAIF+FTA+F WK    TA  +              PQ +Q S+TAELGLAPP AHPRTP
Sbjct:   39 ARGCAILSIVIHAISFYLGGGFFVWQRNACFIAFVMGGLLLCFYERYMYVIGSLGFALCAVFDVLAVLRWITRDDEIFDSDDDYNTTFQVDDTQSEESSDSTILLWLAVPPFLGAIAMGLGAIFTFTAIFAWKYGGGTAIPHVPVAPQPTFDFTKQPQSQQESKTAELGLAPPTAHPRTP 218
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BLAST of mRNA_E_fasciculatus_S2_contig8856.16955.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAL4_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.440e-15
Identity = 50/139 (35.97%), Postives = 68/139 (48.92%), Query Frame = 2 
Query:    2 ARVCIALSIVFHAISLFAKGWFSELQRNTAFGVFAMGVLVLCVYDQYMYAIGGTAFAVCALFDIVAVLRWIT-------------------GDDGA------TAFWYALPPFLGAMTTGLGAIFSFTAVFFWKDVDDTA 343
            AR C   +I+ H  +L   GW    Q   +   F M  ++LC+YD+  Y  GG  FAV A+FDI+ ++ WI                      DG          W+AL PFLGA++ GLGA+FSFT++ FWKD    A
Sbjct:    9 ARACAICAIIVHVGALLVFGWLWVWQWIASVLAFIMCGVLLCMYDRCAYITGGICFAVAAVFDILVLVGWIAIYNNLQDDYYXXXXXXXXXXXDGEWEDWKNVILWFALLPFLGALSLGLGAVFSFTSLCFWKDAGSPA 147
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BLAST of mRNA_E_fasciculatus_S2_contig8856.16955.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTP7_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 4.580e-7
Identity = 38/86 (44.19%), Postives = 52/86 (60.47%), Query Frame = 3 
Query:  693 GYGGDQPE*GSYVTTSHEAN---VLKIVAGGGAVAMPVEVMSCHLRLPHNTP--RYFSAVDVEVEVFGYSKDLRTLRQIIERTGGD 935
            G+ GDQ E G+ VT   E       +I AGGGAVA+ VE+M+CHL LP + P   +       ++V+GY K L  LRQI+++ GGD
Sbjct:  760 GHKGDQSEKGACVTRVREVARGASSQIGAGGGAVAVLVELMACHLALPEDAPLCSFRCRRSKTIKVWGYPKALSALRQIVDKAGGD 845
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8856.16955.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K718_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 2.990e-5
Identity = 37/86 (43.02%), Postives = 51/86 (59.30%), Query Frame = 3 
Query:  693 GYGGDQPE*GSYVTTSHEAN---VLKIVAGGGAVAMPVEVMSCHLRLPHNTP--RYFSAVDVEVEVFGYSKDLRTLRQIIERTGGD 935
            G+ GDQ E G+ VT   E       +I AGGGAVA+ VE+M+CHL LP + P   +       ++V+GYSK L    QI+E+ GG+
Sbjct:  143 GHKGDQSEKGACVTRVREVARGASSQIGAGGGAVAVLVELMACHLALPEDAPLCSFRCRRSKTIKVWGYSKALSA--QIVEKAGGN 226
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8856.16955.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
Uncharacterized2.780e-5664.78protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYM8... [more]
Uncharacterized8.140e-3847.22protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.440e-1535.97protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.580e-744.19protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.990e-543.02protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8856contigE_fasciculatus_S2_contig8856:1641..5205 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1924
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-00_008650.1
Cds size369
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842540.2585797-UTR-E_fasciculatus_S2_contig8856:1640..17461696842540.2585797-UTR-E_fasciculatus_S2_contig8856:1640..1746Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8856 1641..1746 +
1696842540.3071268-UTR-E_fasciculatus_S2_contig8856:3756..52051696842540.3071268-UTR-E_fasciculatus_S2_contig8856:3756..5205Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8856 3757..5205 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842540.271254-CDS-E_fasciculatus_S2_contig8856:1746..18501696842540.271254-CDS-E_fasciculatus_S2_contig8856:1746..1850Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8856 1747..1850 +
1696842540.2817488-CDS-E_fasciculatus_S2_contig8856:2337..24791696842540.2817488-CDS-E_fasciculatus_S2_contig8856:2337..2479Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8856 2338..2479 +
1696842540.2930071-CDS-E_fasciculatus_S2_contig8856:3633..37561696842540.2930071-CDS-E_fasciculatus_S2_contig8856:3633..3756Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8856 3634..3756 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8856.16955.1prot_E_fasciculatus_S2_contig8856.16955.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8856 1747..3756 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8856.16955.1

>prot_E_fasciculatus_S2_contig8856.16955.1 ID=prot_E_fasciculatus_S2_contig8856.16955.1|Name=mRNA_E_fasciculatus_S2_contig8856.16955.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=123bp
MGVLVLCVYDQYMYAIGGTAFAVCALFDIVAVLRWITGDDGATAFWYALP
PFLGAMTTGLGAIFSFTAVFFWKDVDDTAGLYPQIRQGSRTAELGLAPPA
AHPRTPPPAYAYHPQSPPPAYR*
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mRNA from alignment at E_fasciculatus_S2_contig8856:1641..5205+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8856.16955.1 ID=mRNA_E_fasciculatus_S2_contig8856.16955.1|Name=mRNA_E_fasciculatus_S2_contig8856.16955.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3565bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8856:1641..5205+ (Ectocarpus fasciculatus EfasUO2)
GGCACGAGTATGTATTGCGTTATCGATCGTATTCCACGCGATTAGCCTCT
TCGCGAAAGGTTGGTTTTCGGAATTGCAGCGGAACACAGCCTTTGGCGTC
TTCGCGATGGGCGTCCTTGTCCTGTGCGTCTACGACCAGTACATGTATGC
CATAGGCGGCACAGCGTTCGCTGTATGTGCGCTGTTCGACATCGTTGCCG
TTTTGCGATGGTGAGCCCCGGGCAAGTAGGGCAGATTAAGAGCAAGAGCT
CCCGATTTAAAGTTCTGTAGGATTGATCAGGATCACATTTGTCACTTGCT
TGTTGTTCAGCAAAACTTTGTTTTGGTAACGACGCTCTCGGTTTCGGGTA
GCTGCTATACGAACGCCCCGCTCAGTAATCTTTTTCACACGAGCATCATG
TACAGCGCACTGAATGTTGCCAGACCAGCATTGATGTGTCCTAGGCAGGC
CGGTTATACCAATCTGCGTCAGAGCTGCTTCGCGTTGGCCCTAGTTTGGG
ACGTTCCACATTGCTCTTGGTTTCCAAAGATAAGGTGGTTGGTTGAGGGC
TTCAAAGTAGATGGTTTCGTGTTTGCCGTCCATGAGACTAAATGAGCCCG
ATCACCGGGGTGGAAACGAACCCGACCTTCATGTGCCGGCTGTTCCTTCC
TCATCACACGTCCAACAACAATGCCAAAACCCAACCCCATATTTCAGGAT
CACTGGAGACGATGGCGCTACTGCCTTCTGGTACGCCTTGCCCCCTTTTC
TGGGAGCCATGACAACGGGCCTGGGTGCTATTTTTTCCTTCACGGCGGTG
TTCTTCTGGAAGGATGTCGATGACACAGCCGGGCTCTACGTGAGTGCTGA
AGAATAGTTGGGCACCGGATTGGCCCGAAGCGTCATGCCAAACATAGCGT
CGGCGTGTCGACACTCCCTGGTAAAGTATCAGCATTCGTGGGAGCTTGAG
ATTGTTTCTCGCCATTTTGTCGACGGTCGTTGGCCCTGCCCCGCATTCTG
ATGCTGTATATCGATACTTCCCCTTCGTCGAGAGAACACGACGAGCTGCT
ACTGTACTGTACGAGCGCTACACGGAAACCGGTATCAGGCTGTCTTGTCT
CGCTGGTCCTTGTCTCGCGTTTCCGGCGGGAAGTTGAGTTCGGTAGTTCA
ATTTGTGCCCCACCCATGTAGACCATCTTTTGTCCAACGTTTGTCCCCGA
CAAAGGGTACACTGTTCTCGTCGTAGGGGAGGTCGGCGCGAAAGAAGAAA
CACGCCGGCAAATACCTAGTTCACCCAGGGTTGCTTTCTTGACTTTCTCT
CTGCTTGTTTTTCGGGGCAAAAAGTCTTGATTCCAATTGCGAATGGGGGT
GGCGTAACTTGTCAGTCCCAACAATGTATCTCCCCGGATTTCGCCAGATG
ACGGACGGGGTTCCCCAGTAGTAAATAGGGTCTTGTTGTCGTAGCCGACA
CCGACGGCGGTTTTTTCTTGTACACACGGTGTCCAACCGTTAAACATTGT
CATAGAGCGCGTCACATATTTCTCTCGTCCCAAGGATTGTTTTGTTGTTC
CTGTACGAAACGACCATTGGTGAGGTATTCAGTGATTCGTCTAAAACGAT
GATCATCTTGCAAACTCGCTCACAAGTGTACGTAATATGAGAAGGCACTT
GTTCCAGGTCCCACAAGCTGTAGCTGTGGTTCTAAGGCAAGGCCCCATTT
CCTTATGGTTAGTTAGGGCCCGCACTTAAGGGCTTTGGCAGTGAAGAAAC
TGAGCCTCGAAGATAGCGAAACCTAAGCACTTAAAGAGCATCATTTGTGA
GCTCGCCCAAGAGCCCCTACACTAAAACCTATATGGCGGCCATTTCTAGC
ATATCCCTAGGAACTACTGGAAGAACCCCAGCCTTGGCAAACCCTAGAGC
TTCCGAGAAGTGCGGGTGCTAACGCCGCGTGCTGCGTCCTTTCCGAACCA
CGTCGCGGCCGGACCTGTTCCCACCCTTGGCTCCACCAACCAGCCTCAGA
TCCGGCAGGGGAGCAGGACGGCGGAGCTCGGACTAGCACCGCCCGCTGCG
CACCCACGGACGCCACCCCCCGCGTATGCGTACCACCCACAGTCGCCACC
CCCGGCATACCGATGATAACGTGTCGTCTTCGGCAAACGTGGCGGCCGGT
AGCTGCGACGAAGACAATATCGCGACGGACACAAACCAATCCGGATAGCA
GGGCCACAGGCGAAGAGACGCATATCACATCGTCCCTTGCCCTGCGGCGG
AGACACGTCCAGGTTTTAGAAAGAGAGGGAGCGTTGCCTGCGTTGCAATG
ATACAGGACCACGGGTGTTCGGATTCGGTTTTGGGGTACGGAGGAGACCA
ACCGGAGTAGGGATCATACGTGACGACGTCGCACGAGGCGAACGTTCTCA
AAATTGTCGCCGGTGGGGGTGCCGTGGCGATGCCGGTGGAAGTGATGTCG
TGTCATCTCCGTTTACCCCACAACACCCCTCGGTATTTCTCTGCAGTTGA
CGTCGAGGTTGAGGTTTTCGGGTATTCCAAGGACCTGCGCACCCTTCGCC
AGATCATAGAGAGGACTGGTGGTGACCTGGACAGGTCGGCTTGCATTTGC
TGAGAATCGGAGCAGCAACGACGTTGGCAACGAGGGAAGAGGTGCCAGGA
AAGTAATGCGGAGAGAGGGAACATGGGGGAAGGGGGGCTCGGGATATGGA
GGACGTAGACATGGTGTTCCGTTAATTACCGACGGGAAAGAAGATTGTGC
AGAGAAAAAGTCGAACAATGACGAAGGTGGGCAAGGACAACATGAAGTAG
TCTCACTAAACCTCGGTGATGGTGGATGTCAACATGGCAGACTATCGTTG
GGGGTCTCAGTATATTGGGACGGCATTGGTAAGACCCGGCCAGTTGACAT
AGAAGGGATTCCGGATGAGAGAGGGAAGCGACCGGTGTCGCCCCCTCGAT
CGTTGCCAGTGAGATACCTACTGCTGTAGTTTGCTTTCCAGACTTAGAAG
AAAATCAGAAAACAAAATGACACAAATAAGAACTTTTTCTGTAGTCTTAC
AAGGCGAGTTTCAGACGGCTCCTGTCCTACAGAGCACCACCACCACAGCG
AGGGGGAAGAGTGCAAAATGGTGTTTTTTGCAGGACAGTCCAAGTCGAGT
ACCGTGGCATATACTTTACCACGTCGGCGCACCAGTGCTAGGGGAAGCAC
AGGGAAGCTAGACGTATGAACAAATGGGCACTGCCAGTTGCTCTGTTAGA
CCATTCTGCTCCAAGAGCTACACTGTAGCAAATTGTTCAAATTGTTGTCA
TCTCCTCACCCACTCCACCCTTCCTTGAGTTTTTCTTTCCGAAAACGGGG
GGGCGTACGGCACTGGAGCACAATACCAAGAGGTTACGAGTTTGTTCGGA
GATTCAGATATTACGATTGCTGCTACAAATATCGTTGTTGTCGGGACATT
CTACGGCGAACTGCGTACGGGGACGTGCTGGTTAGTTGTCAATAGACTAT
AACATCAGGTAAGAGGGCGGCGTTGGGGGTGGCATTCATTTTTCGGTTCA
TTTTTTAGGCCCGGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8856:1641..5205+

>mRNA_E_fasciculatus_S2_contig8856.16955.1 ID=mRNA_E_fasciculatus_S2_contig8856.16955.1|Name=mRNA_E_fasciculatus_S2_contig8856.16955.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=369bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8856:1641..5205+ (Ectocarpus fasciculatus EfasUO2)
ATGGGCGTCCTTGTCCTGTGCGTCTACGACCAGTACATGTATGCCATAGG
CGGCACAGCGTTCGCTGTATGTGCGCTGTTCGACATCGTTGCCGTTTTGC
GATGGATCACTGGAGACGATGGCGCTACTGCCTTCTGGTACGCCTTGCCC
CCTTTTCTGGGAGCCATGACAACGGGCCTGGGTGCTATTTTTTCCTTCAC
GGCGGTGTTCTTCTGGAAGGATGTCGATGACACAGCCGGGCTCTACCCTC
AGATCCGGCAGGGGAGCAGGACGGCGGAGCTCGGACTAGCACCGCCCGCT
GCGCACCCACGGACGCCACCCCCCGCGTATGCGTACCACCCACAGTCGCC
ACCCCCGGCATACCGATGA
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