mRNA_E_fasciculatus_S2_contig8789.16887.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8789.16887.1
Unique NamemRNA_E_fasciculatus_S2_contig8789.16887.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8789.16887.1 vs.
Match: Ubiquinol (cytochrome c reductase cytochrome c1 prec (ISS) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVX8_ECTSI)

HSP 1 Score: 187 bits (476), Expect = 9.530e-58
Identity = 88/93 (94.62%), Postives = 89/93 (95.70%), Query Frame = 1 
Query:   10 SPCLAGTSISMPPPLMDGQVEYPDGTEATVSQMSKDVTTFLAWCAEPEMDERKRMGMKWCSAMFLGLALSMYYKRFRWSPLKTRKITYHDINR 288
            +P   GTSISMPPPLMDGQVEYPDGT ATVSQMSKDVTTFLAWCAEPEMDERKRMGMKWCSAMFLGLALSMYYKRFRWSPLKTRKITYHDINR
Sbjct:  191 NPYFPGTSISMPPPLMDGQVEYPDGTPATVSQMSKDVTTFLAWCAEPEMDERKRMGMKWCSAMFLGLALSMYYKRFRWSPLKTRKITYHDINR 283
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8789.16887.1 vs.
Match: Cytochrome (c1 n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z587_9STRA)

HSP 1 Score: 129 bits (325), Expect = 4.020e-35
Identity = 58/90 (64.44%), Postives = 74/90 (82.22%), Query Frame = 1 
Query:   10 SPCLAGTSISMPPPLMDGQVEYPDGTEATVSQMSKDVTTFLAWCAEPEMDERKRMGMKWCSAMFLGLALSMYYKRFRWSPLKTRKITYHD 279
            +P  AG +I+MPPPLMDGQVEY DGT ATV+QM+KDV+ FLAWCAEPE DERK+ G+K  + + LG+ ++ YYKR RW+P+KTRKITY +
Sbjct:  183 NPYFAGGAIAMPPPLMDGQVEYEDGTPATVTQMAKDVSQFLAWCAEPEHDERKKFGVKAVTVLALGIGITAYYKRLRWAPVKTRKITYME 272
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8789.16887.1 vs.
Match: Aste57867_18449 (protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LA40_9STRA)

HSP 1 Score: 123 bits (309), Expect = 1.020e-32
Identity = 56/88 (63.64%), Postives = 69/88 (78.41%), Query Frame = 1 
Query:   10 SPCLAGTSISMPPPLMDGQVEYPDGTEATVSQMSKDVTTFLAWCAEPEMDERKRMGMKWCSAMFLGLALSMYYKRFRWSPLKTRKITY 273
            +P   G +I+MP PL DG+VEY DGT ATVSQM+KDV+ FL+W AEPE DERK+MGM+WC  +F+   L+ YYKR RW+PLKTRKI Y
Sbjct:  184 NPYFGGGAIAMPAPLEDGKVEYEDGTPATVSQMAKDVSVFLSWAAEPEHDERKKMGMQWCFGLFVTALLTGYYKRMRWAPLKTRKIEY 271
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8789.16887.1 vs.
Match: Cytochrome (c domain-containing protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C0J4_SAPPC)

HSP 1 Score: 121 bits (304), Expect = 5.570e-32
Identity = 56/88 (63.64%), Postives = 67/88 (76.14%), Query Frame = 1 
Query:   10 SPCLAGTSISMPPPLMDGQVEYPDGTEATVSQMSKDVTTFLAWCAEPEMDERKRMGMKWCSAMFLGLALSMYYKRFRWSPLKTRKITY 273
            +P  +G  I+M  PL DGQVEY DGT ATVSQM+KDV  FL+W AEPE DERK+MGM+WC  +F+    + YYKR RW+PLKTRKITY
Sbjct:  183 NPYFSGGMIAMAQPLNDGQVEYEDGTPATVSQMAKDVACFLSWAAEPEHDERKKMGMQWCFGLFVTALFTGYYKRMRWAPLKTRKITY 270
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8789.16887.1 vs.
Match: Hypothetical (protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YFS8_9STRA)

HSP 1 Score: 119 bits (298), Expect = 3.670e-31
Identity = 56/88 (63.64%), Postives = 70/88 (79.55%), Query Frame = 1 
Query:   10 SPCLAGTSISMPPPLMDGQVEYPDGTEATVSQMSKDVTTFLAWCAEPEMDERKRMGMKWCSAMFLGLALSMYYKRFRWSPLKTRKITY 273
            +P   G +I+MP  LMDGQVEY DGT AT SQM+KDV TFLAWCAEPE DERK+ G++  +A+F+   ++ YYKRFR+SPLKTR+ITY
Sbjct:  175 NPYFPGGAIAMPKQLMDGQVEYEDGTPATESQMAKDVATFLAWCAEPEHDERKKAGVRILAALFVAFLITGYYKRFRYSPLKTRQITY 262
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8789.16887.1 vs.
Match: Hypothetical (protein n=3 Tax=Hemiselmis TaxID=77924 RepID=A0A7S0V9M0_9CRYP)

HSP 1 Score: 117 bits (294), Expect = 1.520e-30
Identity = 54/89 (60.67%), Postives = 65/89 (73.03%), Query Frame = 1 
Query:   10 SPCLAGTSISMPPPLMDGQVEYPDGTEATVSQMSKDVTTFLAWCAEPEMDERKRMGMKWCSAMFLGLALSMYYKRFRWSPLKTRKITYH 276
            +P   G  I MPPP+ DG VEY DGTEA  SQMSKDVTTFLAW AEPE DERK+ G+K  +A+      + +YKRF WSPLK+RKI++H
Sbjct:  178 NPYFPGGKIQMPPPIYDGGVEYEDGTEANASQMSKDVTTFLAWAAEPEQDERKKTGLKVITALSFAAVAAFWYKRFMWSPLKSRKISFH 266
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8789.16887.1 vs.
Match: Hypothetical (protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WYD8_9STRA)

HSP 1 Score: 116 bits (291), Expect = 4.960e-30
Identity = 56/88 (63.64%), Postives = 66/88 (75.00%), Query Frame = 1 
Query:   10 SPCLAGTSISMPPPLMDGQVEYPDGTEATVSQMSKDVTTFLAWCAEPEMDERKRMGMKWCSAMFLGLALSMYYKRFRWSPLKTRKITY 273
            +P  AG +I MP PLMD QVEYPDGT ATVSQM+KDV  FLAW AEPE DERK+ G +W +A+ L   ++ Y KRFRW+ LK RKITY
Sbjct:  184 NPYFAGGAIGMPAPLMDEQVEYPDGTPATVSQMAKDVAVFLAWVAEPEHDERKKGGFRWITALGLAALVAGYTKRFRWANLKARKITY 271
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8789.16887.1 vs.
Match: Hypothetical (protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQH4_9STRA)

HSP 1 Score: 116 bits (290), Expect = 6.270e-30
Identity = 54/88 (61.36%), Postives = 70/88 (79.55%), Query Frame = 1 
Query:   10 SPCLAGTSISMPPPLMDGQVEYPDGTEATVSQMSKDVTTFLAWCAEPEMDERKRMGMKWCSAMFLGLALSMYYKRFRWSPLKTRKITY 273
            +P  AG +I+MP PL DG VEY DGTEAT SQM+KDV+TFLAWCAEPE D+RK+ G++   A+ +   L+ +YKRFR+SPLKTR+I+Y
Sbjct:  179 NPYFAGGAIAMPAPLTDGAVEYEDGTEATASQMAKDVSTFLAWCAEPEADDRKKNGVRIIGALTVAFLLTGFYKRFRYSPLKTRQISY 266
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8789.16887.1 vs.
Match: Cytochrome (c domain-containing protein n=2 Tax=Aphanomyces TaxID=100860 RepID=W4G561_9STRA)

HSP 1 Score: 114 bits (286), Expect = 2.760e-29
Identity = 52/88 (59.09%), Postives = 65/88 (73.86%), Query Frame = 1 
Query:   10 SPCLAGTSISMPPPLMDGQVEYPDGTEATVSQMSKDVTTFLAWCAEPEMDERKRMGMKWCSAMFLGLALSMYYKRFRWSPLKTRKITY 273
            +P   G +I+M   L DG+V Y DGT AT SQM+KDV+ FLAW AEPE DERK+MG++WC  +F    L+ YYKR RW+PLKTRKI+Y
Sbjct:  184 NPYFGGGAIAMEKQLEDGKVTYEDGTPATASQMAKDVSVFLAWAAEPEHDERKKMGLQWCLGLFAAAVLTGYYKRLRWAPLKTRKISY 271
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8789.16887.1 vs.
Match: Uncharacterized (protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388MFW7_CHABU)

HSP 1 Score: 108 bits (271), Expect = 5.500e-29
Identity = 52/92 (56.52%), Postives = 66/92 (71.74%), Query Frame = 1 
Query:   10 SPCLAGTSISMPPPLMDGQVEYPDGTEATVSQMSKDVTTFLAWCAEPEMDERKRMGMKWCSAMFLGLALSMYYKRFRWSPLKTRKITYHDIN 285
            +P   G +I+MP  L DGQVEY DGT AT SQM+KDV TFLAW AEPEM+ERK MGMK   A+   L  + YY+R++W+PLK+R+I    +N
Sbjct:    8 NPYFPGGAIAMPKQLTDGQVEYEDGTPATESQMAKDVVTFLAWAAEPEMEERKLMGMKLILALSFALLTAGYYRRWKWAPLKSRRIVLDVVN 99
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8789.16887.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Ubiquinol9.530e-5894.62cytochrome c reductase cytochrome c1 prec (ISS) n=... [more]
Cytochrome4.020e-3564.44c1 n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A8... [more]
Aste57867_184491.020e-3263.64protein n=1 Tax=Aphanomyces stellatus TaxID=120398... [more]
Cytochrome5.570e-3263.64c domain-containing protein n=4 Tax=Saprolegniacea... [more]
Hypothetical3.670e-3163.64protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=1... [more]
Hypothetical1.520e-3060.67protein n=3 Tax=Hemiselmis TaxID=77924 RepID=A0A7S... [more]
Hypothetical4.960e-3063.64protein n=1 Tax=Pelagomonas calceolata TaxID=35677... [more]
Hypothetical6.270e-3061.36protein n=1 Tax=Phaeomonas parva TaxID=124430 RepI... [more]
Cytochrome2.760e-2959.09c domain-containing protein n=2 Tax=Aphanomyces Ta... [more]
Uncharacterized5.500e-2956.52protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8789contigE_fasciculatus_S2_contig8789:39..1107 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score188.3
Seed ortholog evalue1.6e-45
Seed eggNOG ortholog2880.D7FVX8
Preferred nameCYC1
Model size291
KEGG koko:K00413
KEGG Pathwayko00190,ko01100,ko02020,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map02020,map04260,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00151,M00152
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005750,GO:0005758,GO:0005829,GO:0006091,GO:0006119,GO:0006122,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006839,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008340,GO:0009055,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009719,GO:0009725,GO:0009987,GO:0010033,GO:0010243,GO:0010259,GO:0015672,GO:0015980,GO:0015985,GO:0015986,GO:0016020,GO:0016021,GO:0016310,GO:0016491,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019866,GO:0022900,GO:0022904,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032501,GO:0032502,GO:0032991,GO:0033762,GO:0034220,GO:0034641,GO:0034654,GO:0042221,GO:0042773,GO:0042775,GO:0042776,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043434,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045153,GO:0045155,GO:0045275,GO:0045333,GO:0046034,GO:0046390,GO:0046483,GO:0046907,GO:0048856,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0055086,GO:0055114,GO:0070013,GO:0070069,GO:0070469,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901652,GO:1901698,GO:1901700,GO:1902494,GO:1902600,GO:1990204,GO:1990542
Exons2
EggNOG free text desc.Cytochrome c1
EggNOG OGsCOG2857@1,KOG3052@2759
Cds size291
COG Functional cat.C
BiGG ReactioniMM904.YOR065W,iND750.YOR065W
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842534.3703458-CDS-E_fasciculatus_S2_contig8789:38..1431696842534.3703458-CDS-E_fasciculatus_S2_contig8789:38..143Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8789 39..143 +
1696842534.3847666-CDS-E_fasciculatus_S2_contig8789:921..11071696842534.3847666-CDS-E_fasciculatus_S2_contig8789:921..1107Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8789 922..1107 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8789.16887.1prot_E_fasciculatus_S2_contig8789.16887.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8789 39..1107 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8789.16887.1

>prot_E_fasciculatus_S2_contig8789.16887.1 ID=prot_E_fasciculatus_S2_contig8789.16887.1|Name=mRNA_E_fasciculatus_S2_contig8789.16887.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=97bp
MPLSPCLAGTSISMPPPLMDGQVEYPDGTEATVSQMSKDVTTFLAWCAEP
EMDERKRMGMKWCSAMFLGLALSMYYKRFRWSPLKTRKITYHDINR*
back to top

mRNA from alignment at E_fasciculatus_S2_contig8789:39..1107+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8789.16887.1 ID=mRNA_E_fasciculatus_S2_contig8789.16887.1|Name=mRNA_E_fasciculatus_S2_contig8789.16887.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1069bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8789:39..1107+ (Ectocarpus fasciculatus EfasUO2)
ATGCCGTTGTCGCCGTGTCTTGCAGGGACGTCTATCTCCATGCCCCCTCC
GCTCATGGACGGGCAGGTCGAGTACCCGGACGGCACGGAAGCCACCGTAT
CCCAGGTGCGTACTGCGTAACATAACGGTCGGACTTGTAGGCGAGAGAGC
GCGTAGTCACCGTGCCGTGACCTGGCGGTTGGAAATGCTGCGGCTGGAGC
GGTGGTCGAGCAAGAGAAAACGTAGTCGCCATGCCGCTGCCAAGCGCTTG
GGAAGTGTTGCTGCTCGTGCCAAGCATTGTACTGTAGTCGGGCGAGAGAA
CTCGTAGTCACCATGCCGTGGCGAAGCGGGTGGGAAGTGTTGCTGCTTGT
GCCAAGACCGCTTGTCTACGGCCGCCTAGATTGTTCGTGAAGTATTGTAG
AGAGGAAGAGATTCACCCGAGGGATAACGGAAGGTCTAGGAAAGACTGGT
GCTCACAGGGAACCGGAAACCCCCGCACGGACTGCGGTAACTCTGAAATA
GGGATGGCGGGGATATGGGAGTGTAAGAGGTGCACGCCCAAAGTTGAGGA
GAAGGTAGACAGGGCGCCCCCCCCGCGTTGATCTCTACTCACGGTGGATC
CGTCTTTCGTTTTGGTAGGCCGTGGTGGTTGGGCTTCAATAGACAAACGG
CTCAGCAGCGAAGAACAGTTCGCGGACCCCCCCTCCCCCTCTAGTGCTCT
TTTGCTCTGATGCCCTCCCTCTCTCACCCTGCCCCGATGGTGTCCTCAAC
CGTTTGATCGGGGTCGTCGCGACTTTACGCTTGAAAGATACGTGATGCTC
TCTCTCTCCCGTTCGCGCTTTTTCCCTGCCCCGACTGCTGTGTCGTCTAC
CGGTTTATCCGGGGTCTTCGTGATGTTTGACAGATGTCCAAGGACGTGAC
CACCTTCCTCGCGTGGTGCGCCGAGCCGGAGATGGACGAGCGCAAGCGCA
TGGGCATGAAGTGGTGCTCGGCCATGTTCCTCGGCCTGGCGCTGTCCATG
TACTACAAGCGCTTCCGGTGGTCGCCGCTCAAGACCCGCAAGATCACCTA
CCACGACATCAACCGCTAA
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8789:39..1107+

>mRNA_E_fasciculatus_S2_contig8789.16887.1 ID=mRNA_E_fasciculatus_S2_contig8789.16887.1|Name=mRNA_E_fasciculatus_S2_contig8789.16887.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=291bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8789:39..1107+ (Ectocarpus fasciculatus EfasUO2)
ATGCCGTTGTCGCCGTGTCTTGCAGGGACGTCTATCTCCATGCCCCCTCC
GCTCATGGACGGGCAGGTCGAGTACCCGGACGGCACGGAAGCCACCGTAT
CCCAGATGTCCAAGGACGTGACCACCTTCCTCGCGTGGTGCGCCGAGCCG
GAGATGGACGAGCGCAAGCGCATGGGCATGAAGTGGTGCTCGGCCATGTT
CCTCGGCCTGGCGCTGTCCATGTACTACAAGCGCTTCCGGTGGTCGCCGC
TCAAGACCCGCAAGATCACCTACCACGACATCAACCGCTAA
back to top