mRNA_E_fasciculatus_S2_contig8782.16881.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8782.16881.1
Unique NamemRNA_E_fasciculatus_S2_contig8782.16881.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8782.16881.1 vs.
Match: Thioredoxin (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K7Z7_9PHAE)

HSP 1 Score: 229 bits (585), Expect = 4.680e-67
Identity = 122/157 (77.71%), Postives = 133/157 (84.71%), Query Frame = 3 
Query:    3 SGSSSTTPTGGSAAQASCEEVSAYEQYMRKRGQWTECEAPEEEDKNQTSRVGGLMTTLRRAGSAFSRLLSPVLNFFLRRNRSKEVSCEPGCPDVPDECREAATATVSLYDEYMATRAKKEAAMKQAXXXXXATPPARQQECISPYEEYMASRKRHAG 473
            SGSSS T  GGSAAQASC +VS YEQYMR RGQ  EC+ PE+E+K QTSRVGGLMTTLRRAGSA SRLLSPVLN FLRR+RSKE SCEPGCPDVPDECRE A A VSLY+EYMA RAKKEAA+++A     A P ARQQEC+SPY+EYMASRKRHAG
Sbjct:  353 SGSSSVTINGGSAAQASCGDVSPYEQYMRSRGQSMECQEPEKEEKEQTSRVGGLMTTLRRAGSAVSRLLSPVLNLFLRRDRSKEASCEPGCPDVPDECREGAAAPVSLYEEYMAARAKKEAAIQRATAPQAAAPQARQQECLSPYDEYMASRKRHAG 509
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8782.16881.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Thioredoxin4.680e-6777.71domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8782contigE_fasciculatus_S2_contig8782:2491..6107 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score175.3
Seed ortholog evalue1.9e-41
Seed eggNOG ortholog2880.D7G2R2
Model size1153
KEGG koko:K09584
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.cell redox homeostasis
EggNOG OGsCOG0526@1,KOG0191@2759
Ec32 ortholog descriptionprotein disulfide isomerase fusion protein
Ec32 orthologEc-11_003180.1
EC5.3.4.1
Cds size393
COG Functional cat.CO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03110,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8782.16881.1prot_E_fasciculatus_S2_contig8782.16881.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8782 2574..5430 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842533.931996-UTR-E_fasciculatus_S2_contig8782:2490..25731696842533.931996-UTR-E_fasciculatus_S2_contig8782:2490..2573Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8782 2491..2573 +
1696842534.022056-UTR-E_fasciculatus_S2_contig8782:5430..61071696842534.022056-UTR-E_fasciculatus_S2_contig8782:5430..6107Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8782 5431..6107 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842533.9436464-CDS-E_fasciculatus_S2_contig8782:2573..25841696842533.9436464-CDS-E_fasciculatus_S2_contig8782:2573..2584Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8782 2574..2584 +
1696842533.956125-CDS-E_fasciculatus_S2_contig8782:3236..33891696842533.956125-CDS-E_fasciculatus_S2_contig8782:3236..3389Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8782 3237..3389 +
1696842533.9777043-CDS-E_fasciculatus_S2_contig8782:4063..41141696842533.9777043-CDS-E_fasciculatus_S2_contig8782:4063..4114Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8782 4064..4114 +
1696842533.990018-CDS-E_fasciculatus_S2_contig8782:4451..45021696842533.990018-CDS-E_fasciculatus_S2_contig8782:4451..4502Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8782 4452..4502 +
1696842534.0007503-CDS-E_fasciculatus_S2_contig8782:5015..51231696842534.0007503-CDS-E_fasciculatus_S2_contig8782:5015..5123Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8782 5016..5123 +
1696842534.0115118-CDS-E_fasciculatus_S2_contig8782:5411..54301696842534.0115118-CDS-E_fasciculatus_S2_contig8782:5411..5430Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8782 5412..5430 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8782.16881.1

>prot_E_fasciculatus_S2_contig8782.16881.1 ID=prot_E_fasciculatus_S2_contig8782.16881.1|Name=mRNA_E_fasciculatus_S2_contig8782.16881.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=131bp
MRKRGQWTECEAPEEEDKNQTSRVGGLMTTLRRAGSAFSRLLSPVLNFFL
RRNRSKEVSCEPGCPDVPDECREAATATVSLYDEYMATRAKKEAAMKQAA
APKAATPPARQQECISPYEEYMASRKRHAG*
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mRNA from alignment at E_fasciculatus_S2_contig8782:2491..6107+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8782.16881.1 ID=mRNA_E_fasciculatus_S2_contig8782.16881.1|Name=mRNA_E_fasciculatus_S2_contig8782.16881.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3617bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8782:2491..6107+ (Ectocarpus fasciculatus EfasUO2)
CTTCTGGTAGCTCGTCGACGACTCCTACCGGTGGTTCTGCAGCACAGGCG
TCGTGCGAGGAGGTGTCTGCGTACGAGCAGTACATGCGGAAGAGGTGGGT
GATGAAAGGTCAAGTAGGCGTGGTTATTGGTCATGTTTGTCGTCCCCAGA
ACGAAGGATTGTGAAATTCAAATCATCGTCAAAACGAGGAAAATGAGAAC
AATAGTTCAGCACTGCACTGCTGTCTCAGCACCCCCCTCTCTTCTGTCAC
GCGATTGTTTGTTGGTGTGAATGAGAATGGGTGTTGCGTGGATTGCGGAA
GGTTGCTCCGTTGTCTGCTGCCCTCCCCGGGAAAGGATACGGTGGGAGCC
AGTCGCCTTGGTGCTTTCCCATGGGATGGTGGGTCCCCGTAGCGTTGCGG
AATTTCGATAAGAGGGCAAGGAGAGGTGGACTTGACATGATTCATTTGTT
GTTGTCTTCACAATAAAAACTGTTCCGATCTTTACCCAGTACCTTCATAT
GTCCGTACTGATCCAACACTTACTTGATGGACGCGGTCGATTCCCGTGGT
GACGTCACAGGCTAACTATTATTTGGACGCCTCTCGAAGGGCCTCCTGGT
TGCTTGCTTCTGCTGTCGCTTCCTCGTGATTCCACTGCTATTTTGGTTCA
AGTTGATGCCTGTGTGGACTGGATGCCGCTGTATTCCCCTGTCTTGACCC
GATTCTGTCTCTCTACGTTGGTCGCATGCTCCGTTTGTTATTTCAGGGGC
CAGTGGACGGAGTGCGAGGCTCCTGAGGAGGAGGACAAGAATCAGACGTC
GCGCGTCGGGGGGTTGATGACGACATTGAGACGAGCAGGGTCGGCGTTCT
CTCGTTTGCTGTCTCCGGTGCTGAACTTCTTCTTGAGGAGAAATCGATCG
TGAGTGAGATGACGTGACATGACATGACATGACATGACGAACCCGCTGGT
GGCGGCCTCGTGGTCGGTCTCTCGGTCATCTTGGGAAGAAACCACGTCGA
TGTGGTATGGGGGCCGTCTTGTATGCGTGATTGATTTGTTAAGCAGGGCC
TCACCTCGACCACACGCACGTCGGCAACACGCCCATGATACTACTAGGAC
AACCTTGGGCGGGGATTGTAATTTCGGAGCGCGCATTTATCGGATATGTT
ACCCTCCTCGGTATGAGATATTGTAATTTTTTCGTTGATGAGGTTATCTT
GTCCAATCGTGCTCCTCGCTCTTGACAGAAAGTAGTGGCAGAGGGTGGAT
CAAGGGAACCTGACCGATCCATGTCGGCGGCCTCTTTTCGGATAAGGTCA
AGGTTGGCTACCTTACAGCCACCGAAGTACGATCAGTACAGTACGCCTGT
AGAAATTTTCACGTGGCTCAGCTTAACAGGCTGCATGCATTTGGCCTTTC
GAGGCCCAGCTGTTTTTTTTCCATTTCATGCTCCCCTAGTGAGATAACAA
ATAACTGCTTGTCGACTCGCTTAGGCTGGGCTCAGCTCTCTCCCCCTCCT
CTCGCTATCGCTTTCTCCCTGACTCTTGGTGTGTCTGCCTATCTTTCTGT
CTCGCCGCCCTTTGCTGCTTCAGAAAGGAGGTGTCGTGCGAGCCAGGGTG
TCCGGATGTGCCAGACGAGTGCAGGTGCGATACAGCAGAACACAATATCG
TACACGATATTAAGCTTGATTTTGCGCTGGCGTGCGTTACGTCAATGTCC
TTGCTGTTGTAGTCTTGCAAAGGTCTACGCTTGCCGACGTTCTCACCTCT
CTTCTTCCGCGCCTGTCCTGTATCTGATGGGCTTGCTCTGTGGTTGAGTC
CGCTCGGCAGCACGGCGCCCAATTTTGAGAATTTCTGGACGCATCGCATG
GTGTTGCCCCCGCATTGCATTGCGTTTGCGATCTTCGTTTCTCGGCACGT
ATTCATTCCACCGTTCACCCGTGCGTTTCTTGCTTGTGTGATCCTTGTGC
ATGTTTTCCAGGGAGGCTGCAACTGCTACAGTTTCTCTGTACGACGAGTA
CATGGCCACGAGGTGGGCAAACATTGCATGCAAGGAATGACTTTTGCTGC
TGTGCATACATGGTGTTTTTGCGCACTGCCGAGCTAGGAAAAGGGAAAAC
AGAACGTGTTCCGTTTCCTCCGTGTTTCGATTCCGATGGATGGGTTTAGC
TTTTGAAATTGGTCGTAACGTATCGTTCAGTTGTGTCCTTCCTTCCCTCC
TAGCTTGCTGTCTGGTATATCGTCCTGTTCCGTTTTTTTTTTTTTTCCTG
TATCGGGTGACGATGGAAGCGAAGCAGATGCCGTTCTTGTTTTTTTTGTA
GGCAAGATCCTCAAACGTACGTTATAACTTACGTGCTTGTGTTTCAAGCG
TGTTGGGCTTTGCTTCAGTCCAGGAGTAAGGAATACTAGAAATAGGATGT
GATCATGACATAGTCGATGTACAATACCCGGGAGGCGTATGCCCGCGGTC
AGCGGTCTATATGCCCAACTTAGCCTCGCTTTCAAGTATTAGCTTAACGA
AATCCTGAACTGTTCACGCACGCAGGGCGAAGAAAGAAGCTGCTATGAAA
CAGGCTGCCGCACCAAAGGCTGCCACACCACCAGCAAGGCAACAGGAATG
CATCTCGCCGTACGAAGAATACATGGCGTCGAGGTCAGTTCATTGGCGGA
CACATGTTACATTTTGCCTTTCTCGCTTCGAATGGCTCTTGATTTGAACT
CGCCAGCGTTTATCTACGATTTGAAGGCTGTAAGCTTTGCTCTCACTCAC
GCCCTCTGTTGGTTGGGACGGTCCGTTCCGCTGTGAATGATGTTGATGCT
GTTGACCGCTGTCACAACAAACCCTGTTGATAATCAATGCTCAACCTGTT
CGAACGCAGCACCCCGTAAGATTTGAACCCCCTGATGAAAGCGCTGACAA
TTTGGCATCACCTTTCCGCAGGAAGAGACACGCTGGATGACCTGGCTACC
AGAAAAATTACGGGAGGAATATGCGCGCTTGACCATGGGCGCGGGGAAGC
GCGCATCGATGAATGACCGGCTCCGACTTAGGGCATGTCCTGAGTTACCA
CACGCTCCGGAAATGAAACTCGTACTGATGTATGGATTTTATCTCGTGAG
CAACAAAATACCCCTAATCCTAGGCGCAAGTTAATTCGTGGTTGTTGTGT
GTCCCCCGATCCCGCCTCACTGTTGTCATTTGTTCGAGATGACTCGGCAA
GGTTATATTTCATTTGTCGAGGTTGAAGCGAGAAACGATCGATCGTCATG
CTGTTGTACCGTTGTCTTTTTTTTTCACTCAAGTCAAACTTAGGATGATA
AAAGAATCATAGTGACACACACATGCTCCACCTAGACAAGGAAGCCGTGG
GAATATCTCGACTTTTTTTTTTTTTCACCTGAACCTGAGAAGGATTGTTG
GAAATGGGGAACACCCAGCGATTTCACGGAGCCCCCAGGGTGTAAAGATG
GTGGCATGGGTTTCCGTTTGGCTGAGGCGTTGTCGGGGTGGTAATGCACT
CTTGTCTCTCTTGCTGTACATGTATTTATGTTGTGTCCGCTAGCTCGTTA
GGTCAAGTGCAGCAGCTTAAGAACTAACCGAAATCAGGAGAGGCACGCAA
GGACTCTCAATCGTCCT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8782:2491..6107+

>mRNA_E_fasciculatus_S2_contig8782.16881.1 ID=mRNA_E_fasciculatus_S2_contig8782.16881.1|Name=mRNA_E_fasciculatus_S2_contig8782.16881.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=393bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8782:2491..6107+ (Ectocarpus fasciculatus EfasUO2)
ATGCGGAAGAGGGGCCAGTGGACGGAGTGCGAGGCTCCTGAGGAGGAGGA
CAAGAATCAGACGTCGCGCGTCGGGGGGTTGATGACGACATTGAGACGAG
CAGGGTCGGCGTTCTCTCGTTTGCTGTCTCCGGTGCTGAACTTCTTCTTG
AGGAGAAATCGATCAAAGGAGGTGTCGTGCGAGCCAGGGTGTCCGGATGT
GCCAGACGAGTGCAGGGAGGCTGCAACTGCTACAGTTTCTCTGTACGACG
AGTACATGGCCACGAGGGCGAAGAAAGAAGCTGCTATGAAACAGGCTGCC
GCACCAAAGGCTGCCACACCACCAGCAAGGCAACAGGAATGCATCTCGCC
GTACGAAGAATACATGGCGTCGAGGAAGAGACACGCTGGATGA
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