|
|
Homology
BLAST of mRNA_E_fasciculatus_S2_contig875.16849.1 vs.
Match: Smr (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4J1_ECTSI) HSP 1 Score: 511 bits (1317), Expect = 1.580e-171 Identity = 256/299 (85.62%), Postives = 272/299 (90.97%), Query Frame = 1
Query: 472 MSREGEWESALEKLQCIRDKGLKPSMSTHMDVISVCRRALEWDQASKAFRAMIEAHLTDQPFEDMACQDYEDESNHVFARACGIVAGMQAGAGIKPNNGTYRALLQLCKDEGSWEAAILLLEHSRRSKTKLNLFSFDLLIATVAEQGYKEVSTMLYELGVVEADRALLETDGCGDGQG----EWPKWPLTVGRKGGAILELHDLTQSIALETVQVALLDVVRRPLRRPYWSGDKRWRIVTGMGNNSKDKEAVIKPAVVDLLENLGLKPEFQQHNEGCVELKPASLEAYIRRMKRPGAAA 1356
MSREG+WE ALE LQ IRDKG+KPSMSTHMDVISVCRRALEWDQASKA+R MIEAHLTD PF+DMACQDYEDESNHVFARACGIVAGMQA AGIKPNNGTYRALLQLCKDEGSWEAAILLLEHSRRSK KLNLFSFDLLI TVA+QGYKEVSTMLYELGVV+ADRALLET+G EWPKWPL VGR GGAILELHDLTQ IALETVQVALLDV+RRPLRRPYWSGDKRWRI+TGMGNNSKD+EA+IKPAVV+LLE+LGL+PEFQQ NEGCVELKPA+LEAYIRR +AA
Sbjct: 1 MSREGDWEGALEMLQRIRDKGMKPSMSTHMDVISVCRRALEWDQASKAYREMIEAHLTDHPFDDMACQDYEDESNHVFARACGIVAGMQADAGIKPNNGTYRALLQLCKDEGSWEAAILLLEHSRRSKAKLNLFSFDLLITTVAKQGYKEVSTMLYELGVVDADRALLETEGNXXXXXXXXVEWPKWPLKVGRTGGAILELHDLTQGIALETVQVALLDVIRRPLRRPYWSGDKRWRIITGMGNNSKDREAIIKPAVVELLEDLGLRPEFQQRNEGCVELKPANLEAYIRRQVTKASAA 299
BLAST of mRNA_E_fasciculatus_S2_contig875.16849.1 vs.
Match: Predicted (mitochondrial protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4I1_ECTSI) HSP 1 Score: 153 bits (386), Expect = 3.330e-36 Identity = 93/283 (32.86%), Postives = 152/283 (53.71%), Query Frame = 1
Query: 484 GEWESALEKLQCIRDKGLKPSMSTHMDVISVCRRALEWDQASKAFRAMIEAHLTDQPFEDMACQDYEDESNHVFARACGIVAGMQAGAGIKPNNGTYRALLQLCKDEGSWEAAILLLEHSRRSKTKLNLFSFDLLIATVAEQGYKEVSTMLYELGVVEADRALLETDGCGDGQGEWPKWPLTVGRKGGAILELHDLTQSIALETVQVALLDVVRRPLRRPYWSGDKRWRIVTGMGNNSKDKEAVIKPAVVDLLENLGLKPEFQQHNEGCVELKPASLEAYIRR 1332
G+WE +++ ++ +RD PS++ ++ I CR+A E+D AS M + L + + A + + + +A M I+P TYRA++ L E W+ ++LL+EH +R+ F +D + + + + G+ E++TM++E D GD E + L+LH+ T S AL V+V LLD+ R+P R + + I+TGMGNNSKD EAVIKP V++LL ++GL+P ++NEGC+ L+PA L+AY+ R
Sbjct: 167 GDWEKSVQLIKAMRDSDFVPSVNAYVATIEACRKAGEYDHASTLLSDMNKVCLPEDLIKAYAAP-HPNAPGVTQTQKVFCLAMMMRQDKIEPFEETYRAIMGLASKEKLWQVSLLLVEHLKRNGLVPGKFVYDEICSVLFKTGHPEMATMIFE-------------DALGDKIEELNSFAPPE-------LDLHNHTVSTALAAVRVVLLDMARKPATRTFHDPAQELLIITGMGNNSKDGEAVIKPRVMELLSDMGLEPSMMRNNEGCIVLQPADLQAYMAR 428
BLAST of mRNA_E_fasciculatus_S2_contig875.16849.1 vs.
Match: Smr (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUL6_9STRA) HSP 1 Score: 117 bits (292), Expect = 2.390e-24 Identity = 93/337 (27.60%), Postives = 157/337 (46.59%), Query Frame = 1
Query: 415 PSVSRVDPAAAEEEAAIKRMSREGEWESALEKLQCIRDKGLKPSMSTHMDVISVCRRALEWDQASKAFRAMIEAHLTDQPFEDMACQDYEDESNH----VFA-----------RACGIVAGMQAGAGIKPNNGTYRALLQLCKDEGSWEAAILLLEHSRRSKTKLNLFSFDLLIATVAEQGYKEVSTMLYELGVVEADRALLETDGCGDGQGEWPKWPLTVGRKGGAILELHDLTQSIALETVQVALLDVVRRPLRRPYWSGDKRWRIVTGMGNNSKDKEAVIKPAVVDLLE-NLGLKPEF----------------QQHNEGCVELKPASLEAYIR 1329
P + P A+ AIK+ + GEW A+ + +R+ L PS+ + D I+ RR LE+D+A M +A + F A D D S+ VFA ++ M+ ++P+ TYRA++ +C + W ++LLLEH R + F ++ + + +G +++ ++YE R+L G+G + W + ++LH T + A V+ AL D++R+P RP+ I+TG+G S++ AVIKPA++D+L L + E Q+HN GCVE++P L+A+ R
Sbjct: 13 PPGAEAAPETAKYNDAIKKYASGGEWAKAVVLIDKMREINLSPSIEAYGDTITALRRGLEFDRADALLADMYDACMPADLFAKYAAADPSDASSTQTQCVFALENXXXXXXXXXXXXLLLCMRTDQ-LEPDVDTYRAVMGMCTKDRLWHLSLLLLEHMRLRGVQPGKFIYNEICTVLDMEGKHDLAEIVYE-------RSL--------GEGVFEPWIEDDNK-----VDLHSFTLNTARAAVRSALTDMLRQPSGRPFHDPAAPMHIITGVGRRSEEGVAVIKPAILDMLNVELQIPAEXXXXXXXXXXXXXXXXVQKHNPGCVEIQPQHLQAWAR 328
BLAST of mRNA_E_fasciculatus_S2_contig875.16849.1 vs.
Match: Hypothetical (protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812I2Z0_9DINO) HSP 1 Score: 59.3 bits (142), Expect = 3.070e-5 Identity = 62/216 (28.70%), Postives = 99/216 (45.83%), Query Frame = 1
Query: 763 NGTYRALLQLCKDEGSWEAAILLLEHSRRSKTKLNLFSFDLLIATVAEQGYKEVSTMLYELGVVEADRALLETDGCGDGQG----------------EWPKWPLTVG-RKGGA----------ILELHDLTQSIALETVQVALLDVVR-RPLRRPYWSGDKRWRIVTGMGNNSKDKEAVIKPAVVDLLENLGLKPEFQQHNEGCVELKPASLEAYI 1326
+GT+ AL ++ + SW++ + +LE + + +L+ + ++++ A Q + +L LG++EA +L+ G E P L +G RK GA L+LH L A V ALLD +P P W +VTG GN+S+ E+V++PAV+ LL+ LGL +NEG V L L +I
Sbjct: 322 DGTFNALCRVFEHNSSWQSCLQILEEASLAGPQLSQLTLSVVVS--ACQKSTKWHQVLQLLGMMEASGMVLDDVFQAAGMTSHVYMGDLATALAWYRERPLRGLRLGGRKAGAGWFEHGRRWGHLDLHGLQPEEARLAVCCALLDATMVKPGMLPSWG----LVLVTGRGNHSEG-ESVVRPAVLQLLKELGLAARVDPYNEGRVVLPARELLTFI 530
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig875.16849.1 vs.
Analysis Date: 2022-09-19 ( Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 4
| Match Name | E-value | Identity | Description | |
| Smr | 1.580e-171 | 85.62 | domain-containing protein n=2 Tax=Ectocarpus TaxID... | [more] |
| Predicted | 3.330e-36 | 32.86 | mitochondrial protein n=2 Tax=Ectocarpus TaxID=287... | [more] |
| Smr | 2.390e-24 | 27.60 | domain-containing protein n=1 Tax=Tribonema minus ... | [more] |
| Hypothetical | 3.070e-5 | 28.70 | protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=63... | [more] |
back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 2996 |
| Hectar predicted targeting category | mitochondrion |
| Exons | 10 |
| Ec32 ortholog description | Smr protein/MutS2 C-terminal |
| Ec32 ortholog | Ec-07_000430.1 |
| Cds size | 1374 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1696842530.6616611-UTR-E_fasciculatus_S2_contig875:1858..2521 | 1696842530.6616611-UTR-E_fasciculatus_S2_contig875:1858..2521 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig875 1859..2521 - |
| 1696842530.6828382-UTR-E_fasciculatus_S2_contig875:2574..3533 | 1696842530.6828382-UTR-E_fasciculatus_S2_contig875:2574..3533 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig875 2575..3533 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1696842530.6939921-CDS-E_fasciculatus_S2_contig875:3533..3576 | 1696842530.6939921-CDS-E_fasciculatus_S2_contig875:3533..3576 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig875 3534..3576 - |
| 1696842530.7043996-CDS-E_fasciculatus_S2_contig875:4730..4840 | 1696842530.7043996-CDS-E_fasciculatus_S2_contig875:4730..4840 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig875 4731..4840 - |
| 1696842530.7149785-CDS-E_fasciculatus_S2_contig875:5329..5462 | 1696842530.7149785-CDS-E_fasciculatus_S2_contig875:5329..5462 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig875 5330..5462 - |
| 1696842530.7300618-CDS-E_fasciculatus_S2_contig875:6245..6439 | 1696842530.7300618-CDS-E_fasciculatus_S2_contig875:6245..6439 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig875 6246..6439 - |
| 1696842530.7502484-CDS-E_fasciculatus_S2_contig875:7206..7324 | 1696842530.7502484-CDS-E_fasciculatus_S2_contig875:7206..7324 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig875 7207..7324 - |
| 1696842530.7720542-CDS-E_fasciculatus_S2_contig875:7962..8118 | 1696842530.7720542-CDS-E_fasciculatus_S2_contig875:7962..8118 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig875 7963..8118 - |
| 1696842530.7849984-CDS-E_fasciculatus_S2_contig875:8500..8596 | 1696842530.7849984-CDS-E_fasciculatus_S2_contig875:8500..8596 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig875 8501..8596 - |
| 1696842530.7953627-CDS-E_fasciculatus_S2_contig875:8986..9466 | 1696842530.7953627-CDS-E_fasciculatus_S2_contig875:8986..9466 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig875 8987..9466 - |
| 1696842530.8054936-CDS-E_fasciculatus_S2_contig875:10114..10158 | 1696842530.8054936-CDS-E_fasciculatus_S2_contig875:10114..10158 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig875 10115..10158 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig875.16849.1 >prot_E_fasciculatus_S2_contig875.16849.1 ID=prot_E_fasciculatus_S2_contig875.16849.1|Name=mRNA_E_fasciculatus_S2_contig875.16849.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=458bp
MQLLLRRLALGVNSRKTLACVPTPPAPAASGSGSGGTRRAFTRFSARSAA VPAAAPPAPRHQQQQRQQQQQHQRQELQRQSRTLASSGRQTQAPRAVPKD VLRRRRSTASEATAAAAEAAERQGGSPAKAAGGASPPFPSVSRVDPAAAE EEAAIKRMSREGEWESALEKLQCIRDKGLKPSMSTHMDVISVCRRALEWD QASKAFRAMIEAHLTDQPFEDMACQDYEDESNHVFARACGIVAGMQAGAG IKPNNGTYRALLQLCKDEGSWEAAILLLEHSRRSKTKLNLFSFDLLIATV AEQGYKEVSTMLYELGVVEADRALLETDGCGDGQGEWPKWPLTVGRKGGA ILELHDLTQSIALETVQVALLDVVRRPLRRPYWSGDKRWRIVTGMGNNSK DKEAVIKPAVVDLLENLGLKPEFQQHNEGCVELKPASLEAYIRRMKRPGA AAAATPR* back to topmRNA from alignment at E_fasciculatus_S2_contig875:1859..10158- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E_fasciculatus_S2_contig875.16849.1 ID=mRNA_E_fasciculatus_S2_contig875.16849.1|Name=mRNA_E_fasciculatus_S2_contig875.16849.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=8300bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig875:1859..10158- (Ectocarpus fasciculatus EfasUO2) ATGCAGTTGCTACTCCGGAGGCTTGCTCTCGGCGTAAACTCCAGGTATGT
GTCGTTGCTTGAACAAATCGTTTGTATGGCGTGGCGGCTCGTGCCCGAAC
CTGACAGTCCCGCGGGCAACCAGCGACTTATTTGAAATGTTTTCGTTAGG
GCTGCTGCCAGGACGCTCCCTCTGCCGTCTGTTCGACGTCTGTTGCTGCT
GTACAACTAGTCGCAAGCTGCTGCAAATCTAAAACATGTGGTTTCTATGT
GCAAACACCAACACCATACATACACTGCACGCTGCACGCCAATGTGTACA
TGTGAAGTGTCAGCCAGGCGTTCACTTGAACGAGAACGTGTAGCAGCGTA
GGAACCGCCGTCGAGAGAGATTTTCGAAACCTGTTCCTTTCGTTTAGGTA
TCCTCTTGCATCGTGGATTAACCGAGCTTTGAAACTTGGTCTGTGGTATC
TTATTCAACCTGTAAGGTGCATTCATTGATTGATTTGGTGTCGCACTCGG
CGTTGACAGGCTCGACGCTCGGCTCGTTCTTTTGTTGTCCAAATCCCATC
TACCTCCGCTTCTTTCTAATTTTGGTACATGAATCATCTAAATAGTGCTG
AACGGCGAGCCTTGGGCGAGCCTTGGCGGCCGCCCCGTAATTACCTTTGT
AACCCCCGTGACCATACGGTGCGACGCCACCGCAAACCGCAGGAAAACGC
TGGCGTGCGTTCCAACACCACCAGCACCAGCAGCAAGTGGAAGTGGAAGT
GGAGGAACAAGACGAGCGTTCACTCGTTTCTCGGCCCGTTCCGCTGCCGT
GCCGGCAGCAGCACCTCCTGCACCACGGCACCAACAACAACAACGACAAC
AGCAGCAACAGCATCAGCGACAAGAGCTGCAGCGACAAAGCAGGACTCTA
GCTTCGTCGGGCAGACAGACCCAAGCACCTCGTGCGGTTCCGAAGGACGT
TCTCCGCCGACGACGAAGCACCGCATCCGAGGCAACAGCAGCTGCAGCAG
AAGCAGCAGAACGGCAGGGGGGTTCCCCCGCAAAGGCCGCCGGCGGCGCC
TCCCCGCCGTTCCCGTCAGTTTCACGGGTCGACCCGGCAGCCGCGGAAGA
GGAGGCCGCTATAAAGCGAATGAGCCGAGAGGGGGAATGGGAGAGCGCCC
TGGAAAAGCTGCAGTGCATCAGGTTCGTGGGTTGGAATTGTCCTCGATGA
GGGTGCTGGCTGCTACTGAACTTGCTTCGTTGGGGAGGGGGTTGAACACC
TCCTGGGATATGAATGGGCGTGTGCTTGTGCTGCATTTCGGCCTGACGGA
TGAGGGGGTGCAGCCTTGCATCACATGACCGTGCTGGCTGGCTCTACACG
CTACACGCGTGTTGACTGTTTCGAAGGTGACCGATTAGTGCTTGTTTTGT
TTTCGTGTCTGTCTGCTCTGGGCTTCCCACGGCCTCTATGATCACATCAC
GGATAACGAATCAGGCGTTATTTTGTTGGTGCGCGTGTTTCGTGCTAGTG
CTTGTGGTGGTCGTTTGACAAGACCGCGTTCTGTCTGCTTCGTTGCGTGC
CTTGCTCGGCAGGGATAAGGGGTTGAAGCCTTCTATGTCGACCCACATGG
ACGTGATCAGCGTGTGCAGACGAGCCCTGGAGTGGGACCAGGCATCAAAA
GCCTTCAGGTATACTGATCTTGTTTTCTTTTGTGGTGGTGGTGGTGGTGA
TGTGTTGTTGTGTTGTTGGTGATGGTGATGGTGATGGTGGTGGCGGGTAT
TGATTCTGCTGTTGTCGTTAATGCTGGTGCTGTTGTTCCTCGCCCAAGAT
CATCGCCAAAACGAATACGGAATGCACCGTACCCCCATACGGCTTTTCTT
GACAGGACTTGAAACGAGTCGGATCGCACTCGCCCCCCAGTATCCTTAAA
CCATTACTAACTACGGGCACCTCACCCTGTCCTTCACGGCTCCACTCGAG
ATCTACGAGATGTGCGTACTGCCTCTCGTGGATGCTAGTTTCACCACCGC
GTTGTTCCGTGCCTCGCATCCGCTTTCCTTTCCCTGGAAGAGCGATGATA
GAGGCGCATCTGACGGATCAACCGTTCGAAGACATGGCCTGCCAAGACTA
CGAAGACGAGTCCAACCACGTGTTCGCGAGGGCGTGCGGGATAGTGGCGG
GGATGCAGGCCGGCGCTGGGATCAAGCCGAACAACGGGACTTACAGGTGA
AGCAGCCAAAAGGGGTCTTGGTACTGTATTTGTCGCAAGATACCACCCCC
CTAGTGTTATTGTTTTCGACCTTCAAGATACTGTGGAAGGGGTGTGGTAC
ATTCCGTGGTGTTTTCCGTTGAATATATCCCGTAGTGGGGGTGCTACATT
CGGTGACCCTCTTACTCTCTAAGAGCAATTTTACGCTTTGGGCTCTTGTT
GAGCCACAAAACATTTTCACCGGGTGTGGCATGTTTTGTGAGGGGGGGAT
GTAGAGGGGGGGGTGTTATCTTGTGTAGAATATGGTACCTAGCCGGAAGG
AGGCCGAAAGACTTGGGAGACTCGCCTAGCCACGTCGTCATGCAACATAC
GAGGTCACCGTTGGTGTCGGCAAGCGGTGGCGCCAAGCCTCAACAACGGG
ACCTCGGTTTAGGGAAGACCTTGCGATGAGTTGAGTTCTTATGCGCTCAG
GCTGTATGTGCTTGAAACTACAATTTGTTGCGAGTGCTCGTGCTTCGATG
AAGGTTGTTGGGTCCACGAGAGTGAGAAACCGGGCCTACTGTGTGGAGTA
AGAAGCAAGGCCCAACAACGAAGGCAGCACCTATCAAACAACCAACAACC
AACAACCAACAACAACACAACGTGCGCTCCTCAGAGCCCTGCTGCAGCTC
TGCAAGGACGAAGGAAGCTGGGAGGCGGCAATCCTGCTGCTGGAGCACTC
CCGGCGATCCAAGACCAAGCTCAACCTCTTCTCCTTCGACCTTCTCATCG
CGGTACGGCGTGTATGTGTGTTCTGTTCCACTCCACTTGCCGTGGACATG
TCTTGTCGTTGGAGGGTTTTTGGTCGACGCACGTACGGCTTGAGTTGAGC
TATTTCTGCCGTGGTCAAGACATAGTCAATGTTCTGCGTGAGGAGAAGAG
ACATAGACCGTCGTCGCTGCTGTTGCGATCATCGCTGTGTTCGCGTACGA
GATTTCTGTTGCTGGGAGAAAGAGATACCCGGCCGGTGCTAGATGGACGT
CTTGACGGTATTTCAGTGGTGGAAGACAACGACAACGACAGATATTTCCG
AAGGTTGCCGCCAGGTCCTAAGCAATATATGCATACTCCGTACTTAAGAG
TCAAAACTGGGTGTGACAGTCTATAGCTCAAGACACAATACTTCGTTTCT
AATGTATCAATAGTGCTGTACGTCAGGCATGAGGTGGCCTACATTGAGCA
GTAGAACCTCCCGTGAAAGACGACAACGTTCGATGCTCGTCATGAGTGCT
GAGCAAATACAATTTAGCCAGACATTGAAAACTTCCGCCGGAGAAAAGTT
CCTGGGTACATCTAATCACGCATTTCTGTAAGCTACAGCAGCACCGACTG
TCAAGCGGTACAATAAGAGAGGACGCGTCGAATCGTGGCCAGGATTCCAA
CCAGTATTTTCGCTCCATCGGATCAACCATCCCTATGAAATCATCTTACC
CGATTCTTCTTGACTGCTCTTGTTGAGTTGAGACACTTTCTCTCTACCTT
TCCCTCCCGCAATAACCAGACCGTGGCGGAGCAAGGGTACAAGGAAGTGA
GCACCATGCTGTACGAGCTGGGAGTTGTAGAGGCAGACCGGGCTTTGCTC
GAGACCGATGGGTGCGGGGACGGGCAAGGGGAGTGGCCGAAGTGGCCTCT
CACGGTCGGGCGCAAGGGCGGCGCGATACTCGAGCTGCACGATCTCACCC
AAAGCATCGCGTTGTAAGTGCCTCCTTTGTTACCTCTGTGTCTGACTTGA
CTTGTTTCGGCAATCGCTCTTTCCTTCTTTTTTTTGGGGGTGGGGGGAGG
TTTGCGAGATTTGATTGGCATCAACCCCTCCGGAAGCCATCGCCGTGGTC
ATGTTATGTTGTTGATGGCACCCTGTGCTATCTCCGTCGGCGCACGACAA
GCTGGGAGGGAGGGGGGGTCCGCAGATTCTTGTTCCAACAAGAGGAAGAG
GCGGACCCCCCTGTTAGCTGGCGTCGAGCGCGCTGAACAGCTGACCAATA
GGATGTACGTCAGTCGTTTGGCGGATTCGAAATCGCGAGCACCCTGTTCT
AGTCGTAAGGCTCCCCGGACATGCAGCACATCAAACGGGCGCGTTCCCAC
TTTATCACCCACTTCTGTGTGTGTACTGTTTGAAGTCGTTTCCATGGTTT
AAGAGGAGGAGGGATTCGCGAATCACCCCCTGTTGTACCCGTGCACTGGC
AGTTCGCCACGGCCCCGTCTCTCCCCGCATGTCGATGCCTCGTAGGGCTG
TACTTGTAGTGAATTGCAGTGGGTCTGCTTGGGCTTGAGCGCGACAGCAA
CAGGGCAGCATTGCAGCAAAACTAACCCCCCCCCCCCAGCCCCATATATA
CGCCACAGCTGTGCATACCTTGCATGGTTTGTAAGGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAACTTGAACTTCCACCACCATACACCAGAGTGAGGA
CAACGGCAACAACCGCTCGGTTCGTTCACCTTCACCGCAATCACAGGGAG
ACGGTGCAGGTGGCGTTGTTGGATGTTGTTCGGAGGCCGTTGCGACGGCC
GTACTGGAGTGGAGACAAGCGGTGGCGGATAGTCACCGGCATGGGGAACA
ACAGCAAGGATAAGGAGGCTGTCATCAAGGTGACCACCTGCAACTGGAAG
TGCGGATGTTGGGGTGCCGTGTGTGATGTTGGCGTAAGGGGTAAGAGCGT
GGTTTACTGACGTTTTGTCTCGCTCTTGTTGTCCTCGTAGTTGCCGTTAC
TGCTACTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTGTTTGTT
GTCACCGCTGCTGAAGTCGGCGTCGAAGTGATGTCATCGATGTGAATAGT
GGCGACGAACCGCCATCACGGTGAAAGTAGTGGCAGCATTGTGGCGATCG
TGGAAGTGTGTCGACAACGTTGTGTAGTGTTTGTAGTATCCGTGGTGGTA
TCAGTAGCACGAGTGGCGATGCCAGGGGCCCCTTTCTCCACTGCGTTATT
ATTTGCCCCTCTTTTTGTTGCTTTGGTGTTATGCAGGTGGAATTTCACGC
CCATCTGTGTTGTTTTGTCGATCAATCGTTCAACCCCCCGCTTGTTTTTA
TTTTTTTGTCGTGTTCAGCCCGCAGTGGTGGATCTGCTCGAAAACTTGGG
CCTGAAGCCGGAATTTCAGCAGCACAATGAGGGGTGCGTCGAGCTCAAGC
CCGCAAGCCTAGAGGCATACATCCGACGGTGCGTCTTGTCTTGTTTCCTT
CCGTGCTGCTTGCCGTGTCATGAGTGGGTGCGGACGGTGATGCTGTACCA
GTTGCTGCCAGTGTGTGCGTGCATGATGGCCCGGTCTACTCTCGTAAGGG
CCGTGCATGTCCCGTTTGTGTACCGTGAAAAGAAAAGACCTTGGCTGCCA
ATCTTTGGTCGAATCGTTAAAAGACCTCAGGCAGGTCATTAAAGCATCAG
CAGCACACGTAGAGACTGACTCGCTGTAGCTTCGGACTACAAGGCGAGGA
CTGACAATTTCACCATGTTGCTGAGAATTTCGCCACGTGTTTTTTTTTGT
TTCTCTCAAGGTATTTGAGGAGGCCGGTGATACCTGTTCTGACCAGCGGG
AGTTGGAGCTGGTAACTTTTTTATTTTTGGTCTCAAGACTACCCCGCTTG
CCACCCACCGCTCAGATAAACGCCTCTCACGGTCGCCCCGGCGGTCTAGT
CACGTTACATTGTCCTCGTAGTCCTACATACTACCAATATGATCGCAGCA
GTTGTGAGTTGCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTGGAGTGAAAAGAAGTTGGTATTTTGGTGTTGAAAACGATTACTTG
TAAATTCGTGGCTATGTGCTATGCATACACCTTGGAATCTATTCACGGTT
CGACGAGGGAACGGGACGACTGAATTCTGCTCGCGATAGTAGAAACTCCA
GGCAACCTGGGTGACCTTGCGACCTGCCTCTCGTGTGCCCCTGCTGGTTC
ATTCGTCAAGCATATAAAGGTATATGGTGTGCACCAAAATGTATAGTAGA
CGGGCGCCAGAATAGATGGCATGAACCCGCCCCTGACATGGTCTGAGGGT
TTATCCGAGCCGTGGGTGGCAAGCGGGGTGTTGTAGTCTCAAGAAGAATA
AAGCCGGTACGGTACGTTGGGTTATCTTTCAAACACAGTATAACATAACA
CAGCAGTACAGTACATGCATCCCGAAATCTGAGCTACCGAGTGTCGGGGC
GAAGGAACTGCTCAAAGGAGAAACATTTCTTCCCCCTCCCTTATCACTGC
CCTACCCCCCCCCCCCCCCCCCCCACCCCCACCCCCGCCACCAAATCCTC
TTTCGGGCTACACACTCGCCAATGGGGCACAGGATGAAACGACCGGGTGC
GGCTGCTGCGGCCACCCCTCGATAACCCATGTCTGGGCGGGCGCGCTCTC
GGCTTCATTTTTGCTGATGGAGGTGGCGGTCTCCCATCTTTGACCCCCCC
GCCTTCGCGCGCTCCATCTCTATTCTGTTTCCGCGATGGGCTTCGCGGTG
ACCGGTCTTTCTTTCGAACGTGTTTGGCGTTGCTGATCAAGACGGAGGCA
ACAAGACACAGCAGTATTGGTATTGCTAGATTGAGGAGGACGCGAGGAAG
GCGACGGCCTAGACGGGTTTTCGTATTTTCTTGTAGAATTGTTCTACTAA
ATGAGTAATTTCTCTGCGTTTGCTTTGTGGCACGTGTTGATTCGGGGGGA
CGTGCTGCTTGCTTGTTCTTCTTGCCTCGCGCCAAAAGCGAAGCGTTTTC
CCATCGCTTGTCCCCAAGAGGGGGATAATAATGATCATCCCTTTTTTATT
TTTGTTTTGTTCTTGAACTTTTGGGCAGGGTTTCGACCGTGCTGCTGAAT
CTTCTTGTCATGATCATGGTGTTTTGTGGGGAAGAGGTGATGTTCGTATC
ATTATTACTATTACTTTGTTGTCCTCTGTGTGTTCACGGCGTTTGTTTCA
GACAGAGCTGGAGGGGCTTGCACGATGGGTTAAGGAGGGGGGGAGGGGAG
CAAGCTTCTGTCTGTGGACAAGCTCACAATGCCGGCGTTTTCTCAGCGGG
TTAGAGTTGCACCTTAAACGTGGACGTTACTTTGCATAAATAGCCCTTCC
TGTTTTCAGGAGTTGTTGTCAACTTAGCATCTCCTTCAGGGGGCTTGGGC
TTGCTTATCATCAACAAGCAACAAGCAAGCGTGCTCGATCTCACTCTGTT
TGGAGCTAGCTGCAATGGCTCCTCGTGTCTTGTCTTGTCTTTGAGGTGGT
ACACGTAACGTCATCAATCTGTCTCTCGTGATTAACATCTGTTTTCGACC
TACCGTATGTCACAGAAATGATGGGCTGTATGTTGTCCATCCAGGTTATC
GTATTCCTCCCGTGCAGCGGCGCGTGCCTGGTGGTAGGCTTTTTTTTTTC
TGGCCGACTGACTCGCGGATGAGTGCAGAAGGTATCGATTATAGGGACCA
AGTCATCGGATGCTCATACCCATCCAGCGGTTGATTGAGGCACCTCGTGC
CCGATGTTGGAAGGATAAGGATGGGTGGGTCTGGTTGTATTTGGAGATGG
GGGTTTAGACTAACAGGTCGGAGACCGCACCCTTCTCTGTGTTACCAAGT
CTGCGAGCCTGCAACATGTACGTTGTCTTATCGTGCTTGGTGACTTTTTG
CTATGTTTTGAGTCCCCTTTGCTTGTTTTGCAAGCCAAGCAGCGTTCGTT
TTGTTGGTCGACGAATGAGTTGAGTTGAGCCGAAAACTGGTGAATACTCG
GGTGCTTGTTTGTTGTTGTGCACCAGAATGTCCCCTTGTCATAGAATGCA
CGGTAACCTTAGCGCCGATTTGTCGCAGCTATCAGTGACAGCGATTCTTC
ACATCGTGACCACCACCCACCATTAAGGAACTAACAGGTTGGGTCATGTC
CACATGGTTGCGATATTGGTACACGTGTGACCTGTGCATACTACATCGAT
CGCCGGTGGTGGTGCGGTGGTGCGGTCTTGGATGATTGGTACAGTACAAC
ACGTTGATTACCCTGCTTTCCACCCGCACACACTGCGCACGAAATGGGTG
back to topCoding sequence (CDS) from alignment at E_fasciculatus_S2_contig875:1859..10158- >mRNA_E_fasciculatus_S2_contig875.16849.1 ID=mRNA_E_fasciculatus_S2_contig875.16849.1|Name=mRNA_E_fasciculatus_S2_contig875.16849.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1374bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig875:1859..10158- (Ectocarpus fasciculatus EfasUO2) ATGCAGTTGCTACTCCGGAGGCTTGCTCTCGGCGTAAACTCCAGGAAAAC GCTGGCGTGCGTTCCAACACCACCAGCACCAGCAGCAAGTGGAAGTGGAA GTGGAGGAACAAGACGAGCGTTCACTCGTTTCTCGGCCCGTTCCGCTGCC GTGCCGGCAGCAGCACCTCCTGCACCACGGCACCAACAACAACAACGACA ACAGCAGCAACAGCATCAGCGACAAGAGCTGCAGCGACAAAGCAGGACTC TAGCTTCGTCGGGCAGACAGACCCAAGCACCTCGTGCGGTTCCGAAGGAC GTTCTCCGCCGACGACGAAGCACCGCATCCGAGGCAACAGCAGCTGCAGC AGAAGCAGCAGAACGGCAGGGGGGTTCCCCCGCAAAGGCCGCCGGCGGCG CCTCCCCGCCGTTCCCGTCAGTTTCACGGGTCGACCCGGCAGCCGCGGAA GAGGAGGCCGCTATAAAGCGAATGAGCCGAGAGGGGGAATGGGAGAGCGC CCTGGAAAAGCTGCAGTGCATCAGGGATAAGGGGTTGAAGCCTTCTATGT CGACCCACATGGACGTGATCAGCGTGTGCAGACGAGCCCTGGAGTGGGAC CAGGCATCAAAAGCCTTCAGAGCGATGATAGAGGCGCATCTGACGGATCA ACCGTTCGAAGACATGGCCTGCCAAGACTACGAAGACGAGTCCAACCACG TGTTCGCGAGGGCGTGCGGGATAGTGGCGGGGATGCAGGCCGGCGCTGGG ATCAAGCCGAACAACGGGACTTACAGAGCCCTGCTGCAGCTCTGCAAGGA CGAAGGAAGCTGGGAGGCGGCAATCCTGCTGCTGGAGCACTCCCGGCGAT CCAAGACCAAGCTCAACCTCTTCTCCTTCGACCTTCTCATCGCGACCGTG GCGGAGCAAGGGTACAAGGAAGTGAGCACCATGCTGTACGAGCTGGGAGT TGTAGAGGCAGACCGGGCTTTGCTCGAGACCGATGGGTGCGGGGACGGGC AAGGGGAGTGGCCGAAGTGGCCTCTCACGGTCGGGCGCAAGGGCGGCGCG ATACTCGAGCTGCACGATCTCACCCAAAGCATCGCGTTGGAGACGGTGCA GGTGGCGTTGTTGGATGTTGTTCGGAGGCCGTTGCGACGGCCGTACTGGA GTGGAGACAAGCGGTGGCGGATAGTCACCGGCATGGGGAACAACAGCAAG GATAAGGAGGCTGTCATCAAGCCCGCAGTGGTGGATCTGCTCGAAAACTT GGGCCTGAAGCCGGAATTTCAGCAGCACAATGAGGGGTGCGTCGAGCTCA AGCCCGCAAGCCTAGAGGCATACATCCGACGGATGAAACGACCGGGTGCG GCTGCTGCGGCCACCCCTCGATAA back to top
|