mRNA_E_fasciculatus_S2_contig8741.16846.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8741.16846.1
Unique NamemRNA_E_fasciculatus_S2_contig8741.16846.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8741.16846.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ25_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 1.650e-17
Identity = 38/41 (92.68%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    1 MLPLLKRRAAKPRVLLAAMSRFNNKQDGAFLGYLPEKNAGV 123
            MLPLLK RAAKPRVLLAAMSR+NNKQDG FLGYLPEKNAGV
Sbjct:    1 MLPLLKLRAAKPRVLLAAMSRYNNKQDGPFLGYLPEKNAGV 41
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BLAST of mRNA_E_fasciculatus_S2_contig8741.16846.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 7.810e-15
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    1 MLPLLKRRAAKPRVLLAAMSRFNNKQDGAFLGYLPEKNAGV 123
            MLPLLKRRAAKPRVLLAAMSR+N KQDG FLGYLP+KNAGV
Sbjct:  781 MLPLLKRRAAKPRVLLAAMSRYNEKQDGTFLGYLPDKNAGV 821
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BLAST of mRNA_E_fasciculatus_S2_contig8741.16846.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L0_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 9.440e-14
Identity = 35/41 (85.37%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    1 MLPLLKRRAAKPRVLLAAMSRFNNKQDGAFLGYLPEKNAGV 123
            M+PLLKRRAAKPRVLLAA+SR+N KQDGAFLGYLPEK+ GV
Sbjct:  445 MVPLLKRRAAKPRVLLAALSRYNEKQDGAFLGYLPEKSTGV 485
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8741.16846.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 2.150e-12
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    1 MLPLLKRRAAKPRVLLAAMSRFNNKQDGAFLGYLPEKNAGV 123
            M+PLLKRRAA  RVLLAAMSR+NNKQDGAFLGYLPEKN  V
Sbjct:  812 MVPLLKRRAATLRVLLAAMSRYNNKQDGAFLGYLPEKNVRV 852
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BLAST of mRNA_E_fasciculatus_S2_contig8741.16846.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ8_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 2.340e-10
Identity = 36/52 (69.23%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    1 MLPLLKRRAAKPRVLLAAMSRFNNKQDGAFLGY-----------LPEKNAGV 123
            MLPLLKRRAAKPRVLLAAMSR+NNK DGAFLG            LP KNAG 
Sbjct:  391 MLPLLKRRAAKPRVLLAAMSRYNNKHDGAFLGXXXXXXXXXXXXLPGKNAGA 442
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8741.16846.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS0_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 5.910e-10
Identity = 30/40 (75.00%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    1 MLPLLKRRAAKPRVLLAAMSRFNNKQDGAFLGYLPEKNAG 120
            MLP LKRRA KPRV LA +SR+NNKQDG FLGY P KN G
Sbjct:  364 MLPGLKRRATKPRVALAPLSRYNNKQDGPFLGYTPSKNGG 403
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BLAST of mRNA_E_fasciculatus_S2_contig8741.16846.1 vs.
Match: EsV-1-1 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C8_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 1.840e-9
Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:    4 LPLLKRRAAKPRVLLAAMSRFNNKQDGAFLGYLPEKN 114
            LP LKRRA KP VLLAA+SR+NNKQDG FLGY P+KN
Sbjct:  150 LPGLKRRATKPCVLLAALSRYNNKQDGPFLGYSPDKN 186
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8741.16846.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPN9_ECTSI)

HSP 1 Score: 44.3 bits (103), Expect = 6.460e-5
Identity = 21/33 (63.64%), Postives = 27/33 (81.82%), Query Frame = 1 
Query:    1 MLPLLKRRAAKPRVLLAAMSRFNNKQDGAFLGY 99
            MLP+LKRR  KPR LLAA+SR+ +KQD +F G+
Sbjct:    1 MLPVLKRRVTKPRALLAALSRYIDKQDRSFTGF 33
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8741.16846.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
Uncharacterized1.650e-1792.68protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized7.810e-1590.24protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized9.440e-1485.37protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.150e-1285.37protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.340e-1069.23protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized5.910e-1075.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
EsV-1-11.840e-978.38n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
Uncharacterized6.460e-563.64protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8741contigE_fasciculatus_S2_contig8741:2457..2688 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score60.1
Seed ortholog evalue2.9e-07
Seed eggNOG ortholog2880.D7G2C8
Model size126
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
Cds size126
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842530.4297342-CDS-E_fasciculatus_S2_contig8741:2456..25201696842530.4297342-CDS-E_fasciculatus_S2_contig8741:2456..2520Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8741 2457..2520 -
1696842530.4424615-CDS-E_fasciculatus_S2_contig8741:2626..26881696842530.4424615-CDS-E_fasciculatus_S2_contig8741:2626..2688Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8741 2627..2688 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8741.16846.1prot_E_fasciculatus_S2_contig8741.16846.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8741 2457..2688 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8741.16846.1

>prot_E_fasciculatus_S2_contig8741.16846.1 ID=prot_E_fasciculatus_S2_contig8741.16846.1|Name=mRNA_E_fasciculatus_S2_contig8741.16846.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=42bp
MLPLLKRRAAKPRVLLAAMSRFNNKQDGAFLGYLPEKNAGV*
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mRNA from alignment at E_fasciculatus_S2_contig8741:2457..2688-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8741.16846.1 ID=mRNA_E_fasciculatus_S2_contig8741.16846.1|Name=mRNA_E_fasciculatus_S2_contig8741.16846.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=232bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8741:2457..2688- (Ectocarpus fasciculatus EfasUO2)
ATGCTCCCGCTTCTGAAGCGGAGGGCGGCGAAGCCTCGTGTGCTCTTGGC
GGCCATGTCTAGGTGTGTGATGTTGCTTTAGCTCGACGGGTGTGTCTTGC
GGACAATATTGTTTTTTGAAAGTAGTAGGCTAAAACACGTCCCTCTTCTC
CCCGCGTCTTATCGACAGGTTCAACAACAAGCAGGATGGAGCTTTCCTCG
GGTACTTGCCGGAAAAAAACGCGGGAGTCTAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8741:2457..2688-

>mRNA_E_fasciculatus_S2_contig8741.16846.1 ID=mRNA_E_fasciculatus_S2_contig8741.16846.1|Name=mRNA_E_fasciculatus_S2_contig8741.16846.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=126bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8741:2457..2688- (Ectocarpus fasciculatus EfasUO2)
ATGCTCCCGCTTCTGAAGCGGAGGGCGGCGAAGCCTCGTGTGCTCTTGGC
GGCCATGTCTAGGTTCAACAACAAGCAGGATGGAGCTTTCCTCGGGTACT
TGCCGGAAAAAAACGCGGGAGTCTAA
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