mRNA_E_fasciculatus_S2_contig874.16843.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig874.16843.1
Unique NamemRNA_E_fasciculatus_S2_contig874.16843.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig874.16843.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIU1_ECTSI)

HSP 1 Score: 381 bits (978), Expect = 3.740e-122
Identity = 305/403 (75.68%), Postives = 319/403 (79.16%), Query Frame = 1 
Query:  184 LCLAALRIYLLNEQSHGLTASKRLETSLNLSAASLQTCRLCRETASFQLRVDDRTPRGVWEPRGKPPASYTNGREPPPSARLRALHARPSGPRASKTLRAAPPCSRRSAAVTAGRVPSMKIAKVSWETSSPAELFFAPNNAGALHWLTEVRFGESVSLSVGGIVWPASLRRLAIKPSFEIRDMAXXXXXXXXXLEGRFDQSISDVEWPDSLQELTFGYYFNHPIDEIGEKATGLRELTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVQLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFASWPPNLXXXXXXXXXXXXVESVRFXXXXXXXXXXXXXXXXLKGLAXXXXXKTLTVGRAFDLTGVVLPGGARVCRSGHTAYQVQRVAKR 1392
            L LAALRIYLLNEQSH LTASKRLE+SLNLSAASLQTCRLCRET SFQLRVDDRTPRGVWEPRG+ PAS TN R PPP ARLRALHARPS  R+S+T R APPCS+RSA  T GRVPSMKI+KVSWETSSPAELFF P+NAGALHWL EVRFGESVS+SVGGIVWPASLRRLAIK SFEIRDMAXXXXXXXXXLEGRFD+ I++V                    +IG+KATGLRELT                     XXXXXXXXXXX     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  ASWPPN XXXXXXXXXXXX      XXXXXXXXXXXX    LKGLA     KTLTVGRAFDLTGVVLPGGARVCRSGHTA+QVQR AKR
Sbjct:    2 LYLAALRIYLLNEQSHHLTASKRLESSLNLSAASLQTCRLCRETTSFQLRVDDRTPRGVWEPRGEKPASNTNRRAPPPGARLRALHARPSDSRSSRTQRTAPPCSKRSAMATTGRVPSMKISKVSWETSSPAELFFTPDNAGALHWLIEVRFGESVSVSVGGIVWPASLRRLAIKRSFEIRDMAXXXXXXXXXLEGRFDEPINEVXXXXXXXXXXXXXXXXXXXXDIGQKATGLRELTLGWNFDQILVGVTLPKNLEVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLASWPPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRQPLKGLAWPASLKTLTVGRAFDLTGVVLPGGARVCRSGHTAFQVQRGAKR 404
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig874.16843.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized3.740e-12275.68protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIU1... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig874contigE_fasciculatus_S2_contig874:1911..4679 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size2280
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-20_001530.1
Cds size1395
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842530.0778496-UTR-E_fasciculatus_S2_contig874:1910..27951696842530.0778496-UTR-E_fasciculatus_S2_contig874:1910..2795Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig874 1911..2795 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842530.0910118-CDS-E_fasciculatus_S2_contig874:2795..36381696842530.0910118-CDS-E_fasciculatus_S2_contig874:2795..3638Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig874 2796..3638 -
1696842530.1014683-CDS-E_fasciculatus_S2_contig874:3915..43761696842530.1014683-CDS-E_fasciculatus_S2_contig874:3915..4376Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig874 3916..4376 -
1696842530.1127565-CDS-E_fasciculatus_S2_contig874:4588..46791696842530.1127565-CDS-E_fasciculatus_S2_contig874:4588..4679Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig874 4589..4679 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig874.16843.1prot_E_fasciculatus_S2_contig874.16843.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig874 2796..4679 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig874.16843.1

>prot_E_fasciculatus_S2_contig874.16843.1 ID=prot_E_fasciculatus_S2_contig874.16843.1|Name=mRNA_E_fasciculatus_S2_contig874.16843.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=465bp
MEVPGDTDREGCAHDTFVNVGNRMAKKPAIGGSIVAQEDIRGPSCHPTPP
PSSSAVTPQSTLCLAALRIYLLNEQSHGLTASKRLETSLNLSAASLQTCR
LCRETASFQLRVDDRTPRGVWEPRGKPPASYTNGREPPPSARLRALHARP
SGPRASKTLRAAPPCSRRSAAVTAGRVPSMKIAKVSWETSSPAELFFAPN
NAGALHWLTEVRFGESVSLSVGGIVWPASLRRLAIKPSFEIRDMAWPVRL
EHLALEGRFDQSISDVEWPDSLQELTFGYYFNHPIDEIGEKATGLRELTL
GWNFDQSLAGVALPKNLEVLTIAGVYKRPLDEVQLPSGLRSLTLGGLFDL
PLVSARLPERLESLRLGWAFDQPLFASWPPNLKTLALGYRFNQPVESVRF
PPSLEEFELGVFSRQPLKGLAWPASLKTLTVGRAFDLTGVVLPGGARVCR
SGHTAYQVQRVAKR*
back to top

mRNA from alignment at E_fasciculatus_S2_contig874:1911..4679-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig874.16843.1 ID=mRNA_E_fasciculatus_S2_contig874.16843.1|Name=mRNA_E_fasciculatus_S2_contig874.16843.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2769bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig874:1911..4679- (Ectocarpus fasciculatus EfasUO2)
ATGGAGGTACCCGGCGACACAGACCGCGAGGGCTGCGCGCACGACACCTT
CGTCAACGTCGGCAATCGTATGGCGAAGAAGCCCGCCATCGGTGAGGTCT
AGACGAGGCGTCCACATGTATCGGCGGCCTCGAACTCCTTCCCGTGAACG
TTGTCAAAATTTTGAACCATGCGTGAGTTTCGTCTAAACTGCTGTATGCC
GTTGGCAGGAAGTGTATCCTCACCGTTTTGCCTCACCTTGAAATCCCGCC
AGAGAGACGCTCACCCCTCGTTTGCCCGCGCTTCTCGCGTGATTGCTTTG
CAGGCGGTTCCATCGTCGCACAAGAAGACATCAGGGGGCCGTCGTGTCAT
CCTACCCCCCCACCTTCTTCGTCAGCAGTCACCCCGCAGAGTACGCTGTG
CCTAGCGGCTCTCCGCATTTACCTGCTCAACGAACAAAGCCACGGCCTGA
CCGCCTCGAAACGGCTGGAGACTTCCTTGAACCTCAGCGCGGCTTCCTTG
CAGACGTGCCGGCTGTGCCGAGAGACGGCATCGTTCCAACTCCGAGTTGA
CGACCGCACGCCGCGGGGCGTGTGGGAGCCTAGGGGAAAACCCCCCGCCA
GTTACACAAACGGACGAGAACCTCCGCCCAGTGCACGTCTCCGCGCTCTT
CATGCTCGTCCGTCCGGTCCAAGGGCCTCAAAAACCCTGCGGGCGGCTCC
ACCCTGCTCGAGGAGGTCGGCGGCGGTCACCGCCGGTCGTGTGCCGTCCA
TGAAGATAGCCAAGGTATGTGGTTAAATCTTACGCGAGCACAGGTAGTAG
CGCGGGCAGCAGACGCTTCCAGAGCAGCTGCACGACAAGGAGCGTGCTTA
TCGCGTTGAGCATGGCCTCAAATACAGCGACCGAGTTAGCCTTGCTCACG
TATCACGCCTCCAACATGCAAAACGAATGAAACTCTATATAAGTTGGCCG
CAAAACCTCTTTCATGAGAGCTATGTAGTGTCTCCTACACAGGTGGAACG
TGACCAAGCATGCATCTTCATTTTGCCCTTGGTTATCGCAGGTATCGTGG
GAGACTTCCTCCCCGGCTGAGCTATTTTTCGCCCCGAACAACGCGGGGGC
ACTCCATTGGCTGACCGAGGTTCGGTTTGGAGAGAGCGTCAGTCTCAGCG
TCGGCGGCATCGTCTGGCCGGCCAGCCTCCGACGACTAGCAATAAAACCA
TCGTTTGAGATTCGCGACATGGCGTGGCCGGTTCGGCTCGAACATCTGGC
GCTTGAAGGGCGCTTCGACCAGTCGATCAGCGATGTCGAGTGGCCAGACT
CGCTGCAAGAACTAACCTTCGGCTACTATTTCAACCACCCGATCGACGAG
ATCGGCGAGAAGGCGACAGGCCTTCGGGAGCTCACGCTTGGGTGGAATTT
TGACCAGAGCCTGGCCGGAGTAGCTCTGCCGAAGAACCTTGAGGTCCTTA
CCATTGCTGGGGTGTACAAGCGACCCCTGGATGAGGTGCAGCTGCCGTCA
GGGCTCAGGAGCCTGACTTTGGGAGGCCTCTTTGATCTCCCGCTAGTCTC
CGCCCGCCTTCCCGAACGGCTCGAGAGCCTCCGGCTCGGATGGGCGTTTG
ACCAGCCGCTTTTCGCTTCTTGGCCGCCGAACCTGAAGACCCTTGCTCTT
GGCTACCGCTTCAATCAACCGGTGGAGAGCGTCAGGTTCCCGCCGAGCCT
TGAAGAGTTCGAGCTCGGAGTGTTCTCTCGGCAGCCGCTGAAAGGGCTCG
CGTGGCCGGCGTCACTCAAGACCCTCACGGTCGGTCGTGCGTTCGATCTC
ACGGGGGTGGTTTTGCCGGGGGGTGCTCGCGTGTGCCGTAGTGGGCACAC
GGCGTATCAGGTGCAGCGCGTGGCCAAGAGGTAGTTGCCCGAACCTGCTG
TTGCGAGGTATGCGCCAAGAGCCTCAGATTTTGTACATATATAATTGATT
CTGCGTGGGTTGTACGTCGTCTGGCTTTCAATGGAAGCAGCGGAAGCAGT
CGCGACTGAGCCGGCGGCGTATATTCCGTCGGGACACTGCTGTGCTTTTT
GATTAGTTGGACGTATGTATGCCGTTGTTCTTGCGTTTGCCCTTTCCCAC
CTATGTATCTTGAAGTAAGGTAAATACACCCCCGACAAATGCTGTGCTTG
GATCCAATATTTGGGGAGTTGTGACGCAAAGATAGTTGGTTGTGGACCGC
AGAGAGAAAGCTTGCCCTTACTGCCGATAGAGGTGCCAGTGCCAAAAGGA
CTGACATGCAGCCAAGCTCTCCGCTTATGAAGTGCACAGCGGCTTTGCGC
ACTGAGTTCATTTCATTGTTTTGGCGTTACTTCGGTGCACTTGAGTTGAT
GTGTTTACAGCGGTGGTAGGCCTTTGATGGCGAAGGCTGCGCTCCCACTG
GTCCGGTCGACGGTTGCGGGTATCACTCTCTGCTGTTTTTTCCAGTGCGA
CGCGTGGATGGATTTGAAATAAATCCGAAGTTTATTGAACGCTGCGAGAT
GTTTTTTCTCTTGGTTGCTGTTATCTCCATTCGAGAGTGGGCGATAGCAT
GAGTTCTATTTGGTGGCTGGTACTAATTGAATTCGTCGTCGAATGCACCC
GGGGGCATTTTACCCTTTTTGAGTTGTTCGCGTACGTACATGCGTAGTAC
GCGAACTTGATGCACTTTCCTTTTTCGCGATATAATATGTCCTGTTTTGT
TCCCAAAGGGGGGATTATATATTTACATAGCGCCCAAACTCCGGATAGAA
CAAGAGGCAAGGTTCGGCG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig874:1911..4679-

>mRNA_E_fasciculatus_S2_contig874.16843.1 ID=mRNA_E_fasciculatus_S2_contig874.16843.1|Name=mRNA_E_fasciculatus_S2_contig874.16843.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1395bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig874:1911..4679- (Ectocarpus fasciculatus EfasUO2)
ATGGAGGTACCCGGCGACACAGACCGCGAGGGCTGCGCGCACGACACCTT
CGTCAACGTCGGCAATCGTATGGCGAAGAAGCCCGCCATCGGCGGTTCCA
TCGTCGCACAAGAAGACATCAGGGGGCCGTCGTGTCATCCTACCCCCCCA
CCTTCTTCGTCAGCAGTCACCCCGCAGAGTACGCTGTGCCTAGCGGCTCT
CCGCATTTACCTGCTCAACGAACAAAGCCACGGCCTGACCGCCTCGAAAC
GGCTGGAGACTTCCTTGAACCTCAGCGCGGCTTCCTTGCAGACGTGCCGG
CTGTGCCGAGAGACGGCATCGTTCCAACTCCGAGTTGACGACCGCACGCC
GCGGGGCGTGTGGGAGCCTAGGGGAAAACCCCCCGCCAGTTACACAAACG
GACGAGAACCTCCGCCCAGTGCACGTCTCCGCGCTCTTCATGCTCGTCCG
TCCGGTCCAAGGGCCTCAAAAACCCTGCGGGCGGCTCCACCCTGCTCGAG
GAGGTCGGCGGCGGTCACCGCCGGTCGTGTGCCGTCCATGAAGATAGCCA
AGGTATCGTGGGAGACTTCCTCCCCGGCTGAGCTATTTTTCGCCCCGAAC
AACGCGGGGGCACTCCATTGGCTGACCGAGGTTCGGTTTGGAGAGAGCGT
CAGTCTCAGCGTCGGCGGCATCGTCTGGCCGGCCAGCCTCCGACGACTAG
CAATAAAACCATCGTTTGAGATTCGCGACATGGCGTGGCCGGTTCGGCTC
GAACATCTGGCGCTTGAAGGGCGCTTCGACCAGTCGATCAGCGATGTCGA
GTGGCCAGACTCGCTGCAAGAACTAACCTTCGGCTACTATTTCAACCACC
CGATCGACGAGATCGGCGAGAAGGCGACAGGCCTTCGGGAGCTCACGCTT
GGGTGGAATTTTGACCAGAGCCTGGCCGGAGTAGCTCTGCCGAAGAACCT
TGAGGTCCTTACCATTGCTGGGGTGTACAAGCGACCCCTGGATGAGGTGC
AGCTGCCGTCAGGGCTCAGGAGCCTGACTTTGGGAGGCCTCTTTGATCTC
CCGCTAGTCTCCGCCCGCCTTCCCGAACGGCTCGAGAGCCTCCGGCTCGG
ATGGGCGTTTGACCAGCCGCTTTTCGCTTCTTGGCCGCCGAACCTGAAGA
CCCTTGCTCTTGGCTACCGCTTCAATCAACCGGTGGAGAGCGTCAGGTTC
CCGCCGAGCCTTGAAGAGTTCGAGCTCGGAGTGTTCTCTCGGCAGCCGCT
GAAAGGGCTCGCGTGGCCGGCGTCACTCAAGACCCTCACGGTCGGTCGTG
CGTTCGATCTCACGGGGGTGGTTTTGCCGGGGGGTGCTCGCGTGTGCCGT
AGTGGGCACACGGCGTATCAGGTGCAGCGCGTGGCCAAGAGGTAG
back to top