mRNA_E_fasciculatus_S2_contig8731.16836.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8731.16836.1
Unique NamemRNA_E_fasciculatus_S2_contig8731.16836.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8731.16836.1 vs.
Match: Helicase (C-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNZ7_9PHAE)

HSP 1 Score: 227 bits (578), Expect = 1.260e-67
Identity = 119/126 (94.44%), Postives = 122/126 (96.83%), Query Frame = 1
Query:   13 RILRHLALKEQRVTPRQLVDAWRAKKGAKAMPDQVVGENDRPPKSLSRSACERLVLQLLGDGVLSDDFHFTAFSVVHYVVTGARAHALESGRLPQVSFQVRGSAASGAAGAVRKKPAGASSERLSK 390
            RILRHLALKEQRVTPRQLVDAWRAKKGAKAMPD+VVGENDRPPK+LSRSACERLVLQLLGDGVLSDDFHFTAFSVVHYVVTGARAHALESGRL QVSFQVRGSA +GAAGAVRK PAGASSER SK
Sbjct:  235 RILRHLALKEQRVTPRQLVDAWRAKKGAKAMPDEVVGENDRPPKALSRSACERLVLQLLGDGVLSDDFHFTAFSVVHYVVTGARAHALESGRLSQVSFQVRGSAVAGAAGAVRKNPAGASSERPSK 360          
BLAST of mRNA_E_fasciculatus_S2_contig8731.16836.1 vs.
Match: ATP-dependent (DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHZ5_ECTSI)

HSP 1 Score: 209 bits (532), Expect = 2.190e-59
Identity = 113/127 (88.98%), Postives = 116/127 (91.34%), Query Frame = 1
Query:   13 RILRHLALKEQRVTPRQLVDAWRAKKGAKAMPDQVVGENDRPPKSLSRSACERLVLQLLGDGVLSDDFHFTAFSVVHYVVTGARAHALESGRLPQVSFQVRGSAASGAAGA----VRKKPAGASSER 381
            RILRHLALKEQRVTPRQLVDAWRAKKGAKAMPD++VGENDRPPKSLSRSACERLVLQLLGDGVLSDDFHFTAFSVVHYVVTGARAHALESGRL QVSFQVRGSAA+         VRK PAGASSER
Sbjct:  410 RILRHLALKEQRVTPRQLVDAWRAKKGAKAMPDEIVGENDRPPKSLSRSACERLVLQLLGDGVLSDDFHFTAFSVVHYVVTGARAHALESGRLSQVSFQVRGSAAAXXXXXXXXXVRKTPAGASSER 536          
BLAST of mRNA_E_fasciculatus_S2_contig8731.16836.1 vs.
Match: ATP-dependent (DNA helicase n=3 Tax=Pocilloporidae TaxID=46729 RepID=A0A2B4SSZ7_STYPI)

HSP 1 Score: 68.2 bits (165), Expect = 2.760e-9
Identity = 37/91 (40.66%), Postives = 55/91 (60.44%), Query Frame = 1
Query:   13 RILRHLALKEQRVTPRQLVDAWRAKKGAKAMPDQVVGENDRPPKSLSRSACERLVLQLLGDGVLSDDFHFTAFSVVHYVVTGARAHALESG 285
            +IL+      +RVTP +LVDAW  K  A     +V   +      LSR  CER+++ LL +GVL +DFHFT +S + YV+ G++A  ++SG
Sbjct:  403 KILQQAVSLSERVTPVKLVDAWNGKGQASLRVREVKSPD------LSREDCERVIVHLLLEGVLREDFHFTPYSTISYVLPGSKARVVQSG 487          
BLAST of mRNA_E_fasciculatus_S2_contig8731.16836.1 vs.
Match: ATP-dependent (DNA helicase n=2 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6TQQ1_POCDA)

HSP 1 Score: 68.2 bits (165), Expect = 2.830e-9
Identity = 36/91 (39.56%), Postives = 55/91 (60.44%), Query Frame = 1
Query:   13 RILRHLALKEQRVTPRQLVDAWRAKKGAKAMPDQVVGENDRPPKSLSRSACERLVLQLLGDGVLSDDFHFTAFSVVHYVVTGARAHALESG 285
            +IL+      +RVTP +LVDAW  K  A     ++   +      LSR  CER+++ LL +GVL +DFHFT +S + YV+ G++A  ++SG
Sbjct:  484 KILQQAVSLSERVTPVKLVDAWNGKGQASLRVREIKAPD------LSREDCERVIIHLLLEGVLREDFHFTPYSTISYVLPGSKARVVQSG 568          
BLAST of mRNA_E_fasciculatus_S2_contig8731.16836.1 vs.
Match: ATP-dependent (DNA helicase Q1-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI0014589BDE)

HSP 1 Score: 66.2 bits (160), Expect = 1.330e-8
Identity = 35/90 (38.89%), Postives = 56/90 (62.22%), Query Frame = 1
Query:   16 ILRHLALKEQRVTPRQLVDAWRAKKGAKAMPDQVVGENDRPPKSLSRSACERLVLQLLGDGVLSDDFHFTAFSVVHYVVTGARAHALESG 285
            +L H A  +QRVT  +L+DAW  + GA ++        D P  ++SR   ER++  LL +G + +DFHFTA+S + Y+V G+++  L+SG
Sbjct:  489 LLDHAAQTQQRVTATKLMDAWEGR-GATSL-----RVRDVPEPNISRDKLERILAHLLLNGYIKEDFHFTAYSTISYIVAGSKSRLLQSG 572          
BLAST of mRNA_E_fasciculatus_S2_contig8731.16836.1 vs.
Match: ATP-dependent (DNA helicase n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A443QGJ1_9ACAR)

HSP 1 Score: 65.9 bits (159), Expect = 1.660e-8
Identity = 36/98 (36.73%), Postives = 61/98 (62.24%), Query Frame = 1
Query:   13 RILRHLALKEQRVTPRQLVDAWRAKKGAKAMPDQVVGENDRPPKSLSRSACERLVLQLLGDGVLSDDFHFTAFSVVHYVVTGARAHALESGRLPQVSF 306
            +I+ + A K++R+T  +L++AW  +KG     D+ +   D  P SL+RS CE +++ LL D  L +DFHFTA+S + Y+V+G +A  + S +  +  F
Sbjct:  481 KIIENAAKKKERLTALKLIEAW-LQKG-----DKKLRIPDIEPPSLTRSQCELIIIYLLLDDYLKEDFHFTAYSTISYIVSGHKAALINSKKSIEYDF 572          
BLAST of mRNA_E_fasciculatus_S2_contig8731.16836.1 vs.
Match: ATP-dependent (DNA helicase Q1 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A4FA7)

HSP 1 Score: 64.3 bits (155), Expect = 5.570e-8
Identity = 35/91 (38.46%), Postives = 52/91 (57.14%), Query Frame = 1
Query:   13 RILRHLALKEQRVTPRQLVDAWRAKKGAKAMPDQVVGENDRPPKSLSRSACERLVLQLLGDGVLSDDFHFTAFSVVHYVVTGARAHALESG 285
            +IL   A   +RVTP +L+DAW+ K          +      P +LS+ ACERL++ L+  GVL ++FHFT +S + Y+V G RA  +  G
Sbjct:  492 KILEQAASLGERVTPNKLLDAWKGKG------QTSLRVRSXTPPNLSQDACERLIVHLVFKGVLKEEFHFTPYSTICYLVKGTRAGMVMQG 576          
BLAST of mRNA_E_fasciculatus_S2_contig8731.16836.1 vs.
Match: Hypothetical (protein n=1 Tax=Allacma fusca TaxID=39272 RepID=A0A8J2KXL4_9HEXA)

HSP 1 Score: 62.0 bits (149), Expect = 3.360e-7
Identity = 40/116 (34.48%), Postives = 62/116 (53.45%), Query Frame = 1
Query:   16 ILRHLALKEQRVTPRQLVDAWRAKKGAKAMPDQVVGENDRPPKSLSRSACERLVLQLLGDGVLSDDFHFTAFSVVHYVVTGARAHALESGRLPQ-VSFQVRGSAASGAAGAVRKKP 360
            IL H +  E+R+T  +L+DAW  K   K   + V       PK  +R  CE +V  LL DG L ++FHFT +S + Y+V GA+     +G++ Q + +Q+  S  + +     KKP
Sbjct:  501 ILDHASHLEERMTALKLMDAWLGKGNKKLRVETVA-----TPK-FNRQTCETIVALLLIDGFLKEEFHFTPYSTISYIVAGAKVVLRSNGKISQDIQYQIPLSIVNPSKAKTSKKP 610          
BLAST of mRNA_E_fasciculatus_S2_contig8731.16836.1 vs.
Match: ATP-dependent (DNA helicase n=2 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210PLF8_MIZYE)

HSP 1 Score: 62.0 bits (149), Expect = 3.460e-7
Identity = 34/90 (37.78%), Postives = 55/90 (61.11%), Query Frame = 1
Query:   16 ILRHLALKEQRVTPRQLVDAWRAKKGAKAMPDQVVGENDRPPKSLSRSACERLVLQLLGDGVLSDDFHFTAFSVVHYVVTGARAHALESG 285
            +L H A  +QRVT  +L+DAW  KKG  ++  + V     P  ++SR   ER++  +L +  + +D+HFTA+S + Y+V G ++  LESG
Sbjct:  489 LLDHAAQTQQRVTAAKLLDAWE-KKGPTSLRVRNV-----PEPNISRDKLERILAHMLLNSYVKEDYHFTAYSTISYIVAGPKSRLLESG 572          
BLAST of mRNA_E_fasciculatus_S2_contig8731.16836.1 vs.
Match: LOW (QUALITY PROTEIN: ATP-dependent DNA helicase Q1-like n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF55622)

HSP 1 Score: 62.0 bits (149), Expect = 3.630e-7
Identity = 37/98 (37.76%), Postives = 56/98 (57.14%), Query Frame = 1
Query:   16 ILRHLALKEQRVTPRQLVDAWRAKKGAKAMPDQVVGENDRPPKSLSRSACERLVLQLLGDGVLSDDFHFTAFSVVHYVVTGARAHALESGRLPQVSFQ 309
            IL   +   +RVT  +LVDAW   KG   +  + V   D     LSR  CER+++ +L +GVL +DFHFT FS + Y++ G +A  + SG+   + F+
Sbjct:  811 ILERASSLSERVTANKLVDAW-CGKGQSNLRVRDVKTPD-----LSREDCERVIVDMLLEGVLREDFHFTPFSTISYLLPGPKAGLIHSGKRLYMDFR 902          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8731.16836.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Helicase1.260e-6794.44C-terminal domain-containing protein n=1 Tax=Ectoc... [more]
ATP-dependent2.190e-5988.98DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
ATP-dependent2.760e-940.66DNA helicase n=3 Tax=Pocilloporidae TaxID=46729 Re... [more]
ATP-dependent2.830e-939.56DNA helicase n=2 Tax=Pocillopora damicornis TaxID=... [more]
ATP-dependent1.330e-838.89DNA helicase Q1-like n=1 Tax=Pecten maximus TaxID=... [more]
ATP-dependent1.660e-836.73DNA helicase n=1 Tax=Dinothrombium tinctorium TaxI... [more]
ATP-dependent5.570e-838.46DNA helicase Q1 n=1 Tax=Exaiptasia diaphana TaxID=... [more]
Hypothetical3.360e-734.48protein n=1 Tax=Allacma fusca TaxID=39272 RepID=A0... [more]
ATP-dependent3.460e-737.78DNA helicase n=2 Tax=Mizuhopecten yessoensis TaxID... [more]
LOW3.630e-737.76QUALITY PROTEIN: ATP-dependent DNA helicase Q1-lik... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8731contigE_fasciculatus_S2_contig8731:5209..6389 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score209.5
Seed ortholog evalue1.9e-51
Seed eggNOG ortholog2880.D7FHZ5
Preferred nameRECQL
Model size825
KEGG koko:K10899
Hectar predicted targeting categoryother localisation
GOsGO:0000724,GO:0000725,GO:0000733,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0009378,GO:0009987,GO:0016043,GO:0016462,GO:0016592,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0031974,GO:0031981,GO:0032392,GO:0032508,GO:0032991,GO:0033554,GO:0034641,GO:0036310,GO:0042623,GO:0043138,GO:0043140,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0050896,GO:0051276,GO:0051716,GO:0070013,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097617,GO:0140097,GO:1901360,GO:1901363
Exons2
EggNOG free text desc.four-way junction helicase activity
EggNOG OGsCOG0514@1,KOG0353@2759
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-12_006470.1
EC3.6.4.12
Cds size825
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842529.6146257-CDS-E_fasciculatus_S2_contig8731:5208..58441696842529.6146257-CDS-E_fasciculatus_S2_contig8731:5208..5844Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8731 5209..5844 -
1696842529.6290362-CDS-E_fasciculatus_S2_contig8731:6200..63891696842529.6290362-CDS-E_fasciculatus_S2_contig8731:6200..6389Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8731 6201..6389 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8731.16836.1prot_E_fasciculatus_S2_contig8731.16836.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8731 5209..6389 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8731.16836.1

>prot_E_fasciculatus_S2_contig8731.16836.1 ID=prot_E_fasciculatus_S2_contig8731.16836.1|Name=mRNA_E_fasciculatus_S2_contig8731.16836.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=275bp
MPSSRILRHLALKEQRVTPRQLVDAWRAKKGAKAMPDQVVGENDRPPKSL
SRSACERLVLQLLGDGVLSDDFHFTAFSVVHYVVTGARAHALESGRLPQV
SFQVRGSAASGAAGAVRKKPAGASSERLSKPASAVAAAAQLKKKAGSEAG
SGRGQGGGGKRRARPTDGGGATGVAAAAAAGVVDLCDSEGEEEEVAVQGG
GGKRSGGLAAEEEEEEEEEEEEWSPGDDGGRGGGVRAAYSSDNDSDDFEP
AKPNRRKKAKTVAKRDDGSSSRDA*
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mRNA from alignment at E_fasciculatus_S2_contig8731:5209..6389-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8731.16836.1 ID=mRNA_E_fasciculatus_S2_contig8731.16836.1|Name=mRNA_E_fasciculatus_S2_contig8731.16836.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1181bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8731:5209..6389- (Ectocarpus fasciculatus EfasUO2)
ATGCCTTCGAGCAGGATACTCCGACACCTGGCCTTGAAGGAGCAGCGCGT AACCCCTAGGCAGCTGGTGGACGCGTGGAGGGCAAAGAAGGGTGCGAAGG CAATGCCTGACCAGGTCGTCGGGGAGAACGACCGGCCGCCGAAATCGCTA TCTCGGTCCGCCTGCGAGCGCCTCGTGCTGCAGCTCCTGGTACGTGTTGT GATCGGTGCTGCAGCAACAGGTTTTGCTCATTTAATGCATGTAGCGTCGT CTTCTGCGTGTGTGTGTGTTTTGTGTTTGGTTGGTCTGTAGTGTGGAATG GAACACCGTCCTCGCAGCGGCGGCAGCAGCAGCAGCAGCAACAACAGGAT ACACGTAGCGTACGGGAAGGGAAGGAACATGTTTCACCTGTTGCCGGTAT GACCGAACGTCGCCACCGCAGTCGAAAGATTGGGTAGACGACGAGAGAGA AGCTCTCGGGGGGATTCCCTGAGGAAACTGCCCATCGATCGTTGCCTCAC AGGTACTTGCCCCCCCCCCCTCCCCCGCGCGCGCTTGGCCCTCAGGGAGA CGGCGTGTTGTCCGACGACTTCCACTTCACGGCGTTTTCCGTCGTCCACT ACGTGGTCACGGGGGCACGCGCTCACGCCCTGGAGAGCGGCAGGCTCCCC CAGGTTTCGTTTCAGGTAAGAGGGAGCGCTGCCTCCGGCGCAGCCGGCGC CGTGAGAAAGAAACCCGCCGGTGCTAGCAGCGAAAGGCTTTCCAAGCCGG CGTCTGCGGTGGCGGCGGCGGCACAGCTGAAGAAAAAGGCCGGCTCGGAG GCGGGGAGCGGTCGGGGTCAAGGAGGCGGTGGGAAGAGACGGGCGAGGCC GACGGATGGCGGCGGCGCGACGGGCGTAGCTGCTGCTGCCGCTGCCGGGG TGGTCGACCTTTGCGACAGCGAGGGGGAGGAGGAGGAAGTCGCCGTTCAG GGGGGAGGCGGGAAGCGCTCCGGAGGGTTGGCAGCGGAGGAGGAGGAGGA GGAGGAGGAGGAGGAGGAGGAGTGGAGCCCTGGAGATGATGGTGGTAGAG GCGGTGGTGTTCGGGCGGCGTACTCCTCTGACAACGATAGCGACGACTTT GAGCCGGCCAAGCCCAACAGACGGAAGAAGGCCAAGACTGTGGCGAAACG TGATGATGGTAGCAGTAGTCGTGACGCATGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8731:5209..6389-

>mRNA_E_fasciculatus_S2_contig8731.16836.1 ID=mRNA_E_fasciculatus_S2_contig8731.16836.1|Name=mRNA_E_fasciculatus_S2_contig8731.16836.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=825bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8731:5209..6389- (Ectocarpus fasciculatus EfasUO2)
ATGCCTTCGAGCAGGATACTCCGACACCTGGCCTTGAAGGAGCAGCGCGT
AACCCCTAGGCAGCTGGTGGACGCGTGGAGGGCAAAGAAGGGTGCGAAGG
CAATGCCTGACCAGGTCGTCGGGGAGAACGACCGGCCGCCGAAATCGCTA
TCTCGGTCCGCCTGCGAGCGCCTCGTGCTGCAGCTCCTGGGAGACGGCGT
GTTGTCCGACGACTTCCACTTCACGGCGTTTTCCGTCGTCCACTACGTGG
TCACGGGGGCACGCGCTCACGCCCTGGAGAGCGGCAGGCTCCCCCAGGTT
TCGTTTCAGGTAAGAGGGAGCGCTGCCTCCGGCGCAGCCGGCGCCGTGAG
AAAGAAACCCGCCGGTGCTAGCAGCGAAAGGCTTTCCAAGCCGGCGTCTG
CGGTGGCGGCGGCGGCACAGCTGAAGAAAAAGGCCGGCTCGGAGGCGGGG
AGCGGTCGGGGTCAAGGAGGCGGTGGGAAGAGACGGGCGAGGCCGACGGA
TGGCGGCGGCGCGACGGGCGTAGCTGCTGCTGCCGCTGCCGGGGTGGTCG
ACCTTTGCGACAGCGAGGGGGAGGAGGAGGAAGTCGCCGTTCAGGGGGGA
GGCGGGAAGCGCTCCGGAGGGTTGGCAGCGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGTGGAGCCCTGGAGATGATGGTGGTAGAGGCGGTG
GTGTTCGGGCGGCGTACTCCTCTGACAACGATAGCGACGACTTTGAGCCG
GCCAAGCCCAACAGACGGAAGAAGGCCAAGACTGTGGCGAAACGTGATGA
TGGTAGCAGTAGTCGTGACGCATGA
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