mRNA_E_fasciculatus_S2_contig8728.16832.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E_fasciculatus_S2_contig8728.16832.1
Unique Name	mRNA_E_fasciculatus_S2_contig8728.16832.1
Type	mRNA
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig8728.16832.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7P5_ECTSI)

HSP 1 Score: 503 bits (1294), Expect = 3.300e-173
Identity = 278/336 (82.74%), Postives = 296/336 (88.10%), Query Frame = 1

Query:    1 MMDVPHMEEVIRRSFEAIKGKGPNDRSLPLSFTLRVVGLWLVDMMIYPSYLSVILGVLSTSSGLDNSTVTAGFREWVTDRTARPHRRRLVLGAGVFTETAAVLMARARVAKLEVGAKLAQYLRAEVLVARADDVAAPCAASMTPEIAGLAVVLTSVCEIMEARIAAEAGTGTEEEAAGAGAAAMGEDSSCRSGGSPIVPESEEVGTEASPGVAASICREEGEEEKWKEGGETEGKGAYGEGVGVWKEENEQGLEQHKEAEKVVSAPAFDDAVEGEFAQESALVMKSHVQGRAVRGRCRGGDEASEDKVSLILTRLGQLQHMVVDGFASLKTDQVRA 1008
            MMDVPHMEEVIR SFEAIKGKGPNDRSLP SF LRVVGLWLVDMM++PSY+S +L +  TSSGL + TV  GFREW+ DRTA PHR R V+GAGVFTETAAVLMARARVAKL+VGA+LA+YLRAEVL AR DDVAAPCAASMTPEIAGL VVLTSVCEIMEAR AAEAG+GTEE AAGAGAAAMGEDS CRSG SP VP+SEEV T+ASP VAAS C EEGEEEK KEGGE + KGAYGE +G WKEENEQG EQH+  EK VSAPAFDDAVEGE AQESALVMKSHVQGR VRGRCRGGDEASEDKV+LILTRLGQLQHMVVDGFASLKTDQ  A
Sbjct:    1 MMDVPHMEEVIRSSFEAIKGKGPNDRSLPRSFILRVVGLWLVDMMVFPSYVSFLLEIPPTSSGLGHGTVPTGFREWIADRTAWPHRTRFVMGAGVFTETAAVLMARARVAKLDVGAELARYLRAEVLAARGDDVAAPCAASMTPEIAGLGVVLTSVCEIMEARNAAEAGSGTEE-AAGAGAAAMGEDS-CRSGSSPSVPDSEEVATKASPCVAASFCHEEGEEEKQKEGGERKKKGAYGEELGGWKEENEQGREQHRGVEKGVSAPAFDDAVEGEVAQESALVMKSHVQGRGVRGRCRGGDEASEDKVALILTRLGQLQHMVVDGFASLKTDQTLA 334

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig8728.16832.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWZ1_9PHAE)

HSP 1 Score: 480 bits (1235), Expect = 1.000e-162
Identity = 272/353 (77.05%), Postives = 294/353 (83.29%), Query Frame = 1

Query:    1 MMDVPHMEEVIRRSFEAIKGKGPNDRSLPLSFTLRVVGLWLVDMMIYPSYLSVILGVLSTSSGLDNSTVTAGFREWVTDRTARPHRRRLVLGAGVFTETAAVLMARARVAKLEVGAKLAQYLRAEVLVARADDVAAPCAASMTPEIAGLAVVLTSVCEIMEARIAAEAGTGTEEEAAGAGAAAMGEDSSCRSGGSPIVPESEEVGTEASPGVAASICREEGEEEKWKEGGETEGKGAYGEGVGVWKEENEQGLEQHKEAEKVVSAPAFDDAVEGEFAQESALVMKSHVQGRAVRGRCRGGDEASEDKVSLILTRLGQLQHMVVDGFASLKTDQVRAVAGNNSLHRASPRFKQQ 1059
            MMDVPHMEEVIR SFEAIKGKGPNDRSLPLSF LRVVGLWLVDM ++PSYLSV+L +LSTSSGL +STVT GFREW+ DRTARPHR+RLV+GAGVFTETAAVLMARARVAKL VGA+LA+YLRA+VLVAR DDVAAPCAASMTPE AGL VVL SVCE MEAR AAEAG+GTEE AAGAGAAA+GEDS CRS GSP VP+SE VGTEASPGVAAS CREEGEE+K K G     KGAYGE VG WKEENEQG EQ +  EK VSAPAFDD VEGE  QES LV+KSHVQ R VRGRCRGGDE SEDKV+L       LQHMV+DGFASLKTDQ + VAG  SL     R + +
Sbjct:    1 MMDVPHMEEVIRSSFEAIKGKGPNDRSLPLSFILRVVGLWLVDMTVFPSYLSVLLEILSTSSGLGHSTVTTGFREWIADRTARPHRKRLVIGAGVFTETAAVLMARARVAKLAVGAELARYLRAKVLVARGDDVAAPCAASMTPETAGLGVVLASVCETMEARNAAEAGSGTEE-AAGAGAAAVGEDS-CRSCGSPAVPDSEGVGTEASPGVAASGCREEGEEQKRKGGXXXXXKGAYGEEVGGWKEENEQGREQDRGVEKRVSAPAFDDPVEGEVTQESVLVVKSHVQDREVRGRCRGGDEGSEDKVAL-------LQHMVIDGFASLKTDQDKLVAGQRSLEDELGRLRSR 344

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig8728.16832.1 vs.

BLAST of mRNA_E_fasciculatus_S2_contig8728.16832.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
Uncharacterized	3.300e-173	82.74	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]
Uncharacterized	1.000e-162	77.05	protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 131...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig8728	contig	E_fasciculatus_S2_contig8728:2823..6147 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Properties


Property Name	Value
Stop	0
Start	1
Model size	1162
Hectar predicted targeting category	other localisation
Exons	3
Ec32 ortholog description	hypothetical protein
Ec32 ortholog	Ec-00_010440.1
Cds size	1161

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842529.1470075-CDS-E_fasciculatus_S2_contig8728:2822..3053	1696842529.1470075-CDS-E_fasciculatus_S2_contig8728:2822..3053	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig8728 2823..3053 -
1696842529.1584902-CDS-E_fasciculatus_S2_contig8728:4375..5240	1696842529.1584902-CDS-E_fasciculatus_S2_contig8728:4375..5240	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig8728 4376..5240 -
1696842529.1709745-CDS-E_fasciculatus_S2_contig8728:6082..6147	1696842529.1709745-CDS-E_fasciculatus_S2_contig8728:6082..6147	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig8728 6083..6147 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig8728.16832.1	prot_E_fasciculatus_S2_contig8728.16832.1	Ectocarpus fasciculatus EfasUO2	polypeptide	E_fasciculatus_S2_contig8728 2823..6147 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E_fasciculatus_S2_contig8728:2823..6147-
coding sequence from alignment at E_fasciculatus_S2_contig8728:2823..6147-

protein sequence of mRNA_E_fasciculatus_S2_contig8728.16832.1

>prot_E_fasciculatus_S2_contig8728.16832.1 ID=prot_E_fasciculatus_S2_contig8728.16832.1|Name=mRNA_E_fasciculatus_S2_contig8728.16832.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=387bp
MMDVPHMEEVIRRSFEAIKGKGPNDRSLPLSFTLRVVGLWLVDMMIYPSY
LSVILGVLSTSSGLDNSTVTAGFREWVTDRTARPHRRRLVLGAGVFTETA
AVLMARARVAKLEVGAKLAQYLRAEVLVARADDVAAPCAASMTPEIAGLA
VVLTSVCEIMEARIAAEAGTGTEEEAAGAGAAAMGEDSSCRSGGSPIVPE
SEEVGTEASPGVAASICREEGEEEKWKEGGETEGKGAYGEGVGVWKEENE
QGLEQHKEAEKVVSAPAFDDAVEGEFAQESALVMKSHVQGRAVRGRCRGG
DEASEDKVSLILTRLGQLQHMVVDGFASLKTDQVRAVAGNNSLHRASPRF
KQQQWLLAGAVSVEFHLRPLVCCVPLAETLGDLPVVS

mRNA from alignment at E_fasciculatus_S2_contig8728:2823..6147-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E_fasciculatus_S2_contig8728.16832.1 ID=mRNA_E_fasciculatus_S2_contig8728.16832.1|Name=mRNA_E_fasciculatus_S2_contig8728.16832.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3325bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8728:2823..6147- (Ectocarpus fasciculatus EfasUO2)
ATGATGGATGTTCCGCACATGGAGGAGGTGATCCGCAGGAGCTTCGAAGC
CATCAAGGGCAAGGGGTGAGTGGGCCCTAAGCCTGTAGGGCAAAACAAGG
GTGGATCGCAGGCCTTTCGTAAGTTGGGTAGACTTGTGTAGCGGTGTACT
TCACCGGTGTGGGATGGGCCTCTCCATATTGCGTTTTGTGACTGACATGA
ATCTCGCTTGTCCAGACAGCAGCAGCATAGGTAGGCCGGATGCGGCTGGT
CTCTCGGTGTCTCGCTTTGGACTTTGCGATTTCCGTCGGCAGCCCCAAGC
CGGATCTCCTTACACATAAACAAGCGGAGGGAGCTACAGTCTACGTAGGG
ATCCCGCATCCCGGACTTCTGCCGTGGACAAGCAAGTGCCCAAATTGTCA
AAGATCGGGCTCTGGCCACTTTTTTTTTTTTTTTTTTCCATCCGTGGGCG
CTTTTTTGAACCGAAACCAACCAACCGTCACCACGCTCTAGGCGACTCCT
GTTTCCGAAGAACGCAAGCGGGAGAAAGACGGCAGTTGTTGGCAGCTGCC
GATATCACAGTGATAGCACCAAACCTGTCAAGTGTCTGTGTTGTTCCCGT
GCAGGTTGGGAGCCGTGTTGCTGAAACACTACTGTTCCAGACGCGGCCTA
TTGTAGTGTAGCTGCGATCGTACAGCCGTTCCGTTGTGTGCGCGGGCGTT
TCGCCGGGGTCATATCTTCGGCATGCGCGAGTCACCCGCTGGCTTATATC
TGAACCGTACCGTCTGCTGTTCGGCAGTTTCATGACAAGCAACCGGCTTG
CTCGGTCCCCACAAAATCGTACGCTGCGGCAGCAGAGTAGATGCCAAACC
TGCTGCTGCGTACGCTTTTGTCGCCGCCCCGTGCACTACACTGCTGCTGT
TCAACAGGCCCAACGACCGGAGTCTACCCCTGAGTTTCACCCTCCGCGTC
GTGGGGCTCTGGCTGGTGGACATGATGATCTACCCCTCCTACTTGTCTGT
CATTCTCGGAGTCCTGTCGACAAGCTCCGGACTGGACAACAGCACCGTGA
CGGCAGGGTTTCGCGAGTGGGTCACCGACAGGACGGCGCGGCCGCACCGC
AGACGCCTCGTGCTGGGCGCTGGCGTTTTCACGGAAACGGCGGCGGTCTT
GATGGCGAGAGCTAGGGTCGCCAAGCTCGAGGTGGGGGCGAAGCTTGCGC
AGTACCTTCGTGCCGAGGTTCTAGTGGCGAGGGCCGATGATGTCGCGGCA
CCGTGTGCAGCATCCATGACGCCCGAGATTGCAGGCCTGGCGGTTGTGTT
GACCTCGGTCTGCGAGATCATGGAGGCTAGAATTGCGGCGGAGGCCGGGA
CGGGGACGGAGGAGGAGGCCGCTGGGGCGGGAGCAGCAGCGATGGGAGAG
GACTCTAGTTGTCGCAGCGGTGGCTCTCCAATTGTCCCTGAGAGCGAGGA
AGTTGGCACCGAGGCATCCCCGGGCGTGGCAGCATCAATTTGTCGTGAGG
AGGGAGAGGAGGAGAAGTGGAAAGAGGGAGGGGAGACGGAGGGAAAAGGG
GCCTACGGAGAGGGGGTGGGGGTGTGGAAAGAGGAGAACGAGCAGGGGCT
GGAGCAGCACAAGGAGGCCGAGAAGGTAGTGTCGGCCCCAGCTTTCGACG
ACGCGGTGGAAGGAGAGTTTGCCCAAGAGTCCGCCCTCGTCATGAAGAGC
CACGTGCAGGGCCGGGCGGTCAGAGGGCGTTGCAGAGGCGGTGATGAGGC
AAGCGAGGACAAGGTTTCCCTGGTGAGTGCAAACCGCAGTTCTACGGGAG
GGAGTAGAACAAATATCTTTGCAGAGAGTCGTGTACAACGCATCTACAAC
AATGTTTTTTTTTGCGGGGGGAACGGTTGGAAGACAAATCACGGCCGCGG
TTTTCCACTGTTCTCAGATCATGTATATTTTGCTGTCCAACAATGCTGCA
GCAGTAATTTTCGTTCTGACTCAACCGCCCTGTTGCCGTGTTTTCGCTCC
AATCGTAACGGCAGATAGGTTTGATACCAAGTAAAATTGGAGGGGTTTGG
AGATCCGAAGTTGAATTTTTTGGAACGACATCGGGAAATAATTGTCCTGG
CAGTTTTTAGTAAACCGTCTGCAGTATGTAGTCGTCCGTTGAGTGGAAAT
CTGTTTCATCGAAGACCTTTGAAAACGTTGTTCAACGTTGTTCATCTGGA
CATGGACGACCAGAACCCGATCTTGACTACACCAAGGATTTTTTTTGCCT
AACACGCCTGTAATTTCGAAGCAGAACCTTCGAGTTGATTCCTCTCCATC
CTAAGTTACTCTTGTCTGATACGACCTGGCTATTGATATCCTGCATCCGA
CGATCACGGGACCAAAAACAGCCTGAACCGCGAACTGAATGGCGGCATGG
TCAGAATAACCTAACCCATGGCGGGTGGGGGGGAGCGAGACAAACAACTT
GAGGGAGAAAGTATGAAACAAACTCATGTGTGAGTGACAAAATCTGGACC
CGTGCGCCCAGAATTGGCAAAGGAGCGAATTATTTATGTATCATGGGAAT
TGGCAAAGGAGCGAATTCTTTATACCATGGGCAAGGAAGATGCCGACTCA
TTGATCCGCACCGAGTATCCAGTGAATGCGCCCTCAATGTAATTGTGGAA
CGTCCCTCGGGGGAGTCACGCTTGTGCACTGCCTCTCTTGGCGGCTAAAC
TCGATCATGCTACGTCCCGGGTTTAGAATGGGTAAAGGTTGTAGTCTGGA
ATAGAGGTTGAGAGCGCGCATGCTTCGTACCGCAATACCCTATTTTTTTG
CGTTGAAAAATCTTCACATGCAAAATTTCCACGATGGTTCTCCACCCTTA
CAATGTTAGCAACACATCGGATGCGGGCGGGAATAACCTTGTTTACGTGG
AATCGTAGTTTGTTCTTCTCACGCTAGAGTCGTCTGGCACGGATCACCCG
CAGGCTGACTGTCCGGAACGTTGTTCCTGATCAGTCTTCTCTCTCACACA
CAATCCGGTTTCTGATCCTCTCAACCTGTCTCGGTGTTGATTTAACCCCC
TCCCTTTCCCCCCGTGTGTGCTTAAACATCGTGCACCCCTCTAGATCCTG
ACACGGCTCGGGCAGCTGCAGCACATGGTGGTCGACGGCTTTGCCTCTCT
GAAGACTGACCAGGTAAGAGCGGTGGCGGGAAACAACTCACTCCACCGTG
CATCACCAAGGTTCAAACAACAACAATGGCTCTTGGCCGGGGCCGTGAGC
GTTGAGTTTCATCTGCGGCCTCTGGTCTGTTGTGTGCCATTGGCAGAAAC
ACTCGGTGACCTGCCTGTGGTCTCC

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8728:2823..6147-

>mRNA_E_fasciculatus_S2_contig8728.16832.1 ID=mRNA_E_fasciculatus_S2_contig8728.16832.1|Name=mRNA_E_fasciculatus_S2_contig8728.16832.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1161bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8728:2823..6147- (Ectocarpus fasciculatus EfasUO2)
ATGATGGATGTTCCGCACATGGAGGAGGTGATCCGCAGGAGCTTCGAAGC
CATCAAGGGCAAGGGGCCCAACGACCGGAGTCTACCCCTGAGTTTCACCC
TCCGCGTCGTGGGGCTCTGGCTGGTGGACATGATGATCTACCCCTCCTAC
TTGTCTGTCATTCTCGGAGTCCTGTCGACAAGCTCCGGACTGGACAACAG
CACCGTGACGGCAGGGTTTCGCGAGTGGGTCACCGACAGGACGGCGCGGC
CGCACCGCAGACGCCTCGTGCTGGGCGCTGGCGTTTTCACGGAAACGGCG
GCGGTCTTGATGGCGAGAGCTAGGGTCGCCAAGCTCGAGGTGGGGGCGAA
GCTTGCGCAGTACCTTCGTGCCGAGGTTCTAGTGGCGAGGGCCGATGATG
TCGCGGCACCGTGTGCAGCATCCATGACGCCCGAGATTGCAGGCCTGGCG
GTTGTGTTGACCTCGGTCTGCGAGATCATGGAGGCTAGAATTGCGGCGGA
GGCCGGGACGGGGACGGAGGAGGAGGCCGCTGGGGCGGGAGCAGCAGCGA
TGGGAGAGGACTCTAGTTGTCGCAGCGGTGGCTCTCCAATTGTCCCTGAG
AGCGAGGAAGTTGGCACCGAGGCATCCCCGGGCGTGGCAGCATCAATTTG
TCGTGAGGAGGGAGAGGAGGAGAAGTGGAAAGAGGGAGGGGAGACGGAGG
GAAAAGGGGCCTACGGAGAGGGGGTGGGGGTGTGGAAAGAGGAGAACGAG
CAGGGGCTGGAGCAGCACAAGGAGGCCGAGAAGGTAGTGTCGGCCCCAGC
TTTCGACGACGCGGTGGAAGGAGAGTTTGCCCAAGAGTCCGCCCTCGTCA
TGAAGAGCCACGTGCAGGGCCGGGCGGTCAGAGGGCGTTGCAGAGGCGGT
GATGAGGCAAGCGAGGACAAGGTTTCCCTGATCCTGACACGGCTCGGGCA
GCTGCAGCACATGGTGGTCGACGGCTTTGCCTCTCTGAAGACTGACCAGG
TAAGAGCGGTGGCGGGAAACAACTCACTCCACCGTGCATCACCAAGGTTC
AAACAACAACAATGGCTCTTGGCCGGGGCCGTGAGCGTTGAGTTTCATCT
GCGGCCTCTGGTCTGTTGTGTGCCATTGGCAGAAACACTCGGTGACCTGC
CTGTGGTCTCC