mRNA_E_fasciculatus_S2_contig8723.16829.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8723.16829.1
Unique NamemRNA_E_fasciculatus_S2_contig8723.16829.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8723.16829.1 vs.
Match: Hypothetical (leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKY6_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 5.230e-39
Identity = 92/99 (92.93%), Postives = 92/99 (92.93%), Query Frame = 2 
Query:    2 MVESHVGTLELVRPGDVVELVEGMQDLYIMGTVDGFQKVTKMDGLQDMSSLTEMTLQSCLIAXXXXXXXXXXXXXXXXXDNQILSLNIPPSLGSLTYLD 298
            MVESHVGTLELVRPGDVVELVEGMQDLYIMGTVDGFQKVTKMDGLQDMSSLTEMTLQSCLIAXXXXXXXXXXXXXXXX DNQILSLNIPPSL      D
Sbjct:  124 MVESHVGTLELVRPGDVVELVEGMQDLYIMGTVDGFQKVTKMDGLQDMSSLTEMTLQSCLIAXXXXXXXXXXXXXXXXYDNQILSLNIPPSLXXXXXXD 222
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BLAST of mRNA_E_fasciculatus_S2_contig8723.16829.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9X2_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 5.250e-13
Identity = 43/89 (48.31%), Postives = 51/89 (57.30%), Query Frame = 2 
Query:   32 LVRPGDVVELVEGMQDLYIMGTVDGFQKVTKMDGLQDMSSLTEMTLQSCLIAXXXXXXXXXXXXXXXXXDNQILSLNIPPSLGSLTYLD 298
            +V PGDVVELV GMQD+YI+GTVDGF KVTK+ GL+      E+TL+SCLI                  DNQIL+L        L  LD
Sbjct:   50 IVTPGDVVELVPGMQDIYIVGTVDGFGKVTKITGLEP-----ELTLRSCLIEKMENLETLTELERLELYDNQILTLADLTPFKKLRILD 133
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8723.16829.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Hypothetical5.230e-3992.93leucine rich repeat protein n=2 Tax=Ectocarpus Tax... [more]
Uncharacterized5.250e-1348.31protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8723contigE_fasciculatus_S2_contig8723:1508..2337 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size301
Hectar predicted targeting categoryother localisation
Exons2
Cds size300
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842528.9425206-CDS-E_fasciculatus_S2_contig8723:1507..16501696842528.9425206-CDS-E_fasciculatus_S2_contig8723:1507..1650Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8723 1508..1650 -
1696842528.9528165-CDS-E_fasciculatus_S2_contig8723:2180..23371696842528.9528165-CDS-E_fasciculatus_S2_contig8723:2180..2337Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8723 2181..2337 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8723.16829.1prot_E_fasciculatus_S2_contig8723.16829.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8723 1508..2337 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8723.16829.1

>prot_E_fasciculatus_S2_contig8723.16829.1 ID=prot_E_fasciculatus_S2_contig8723.16829.1|Name=mRNA_E_fasciculatus_S2_contig8723.16829.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=100bp
DGGIPRGYAGAGEARRRGGAGGRDARPVHHGHGRRVPEGHQDGWVARHVI
PHGNDPAVVPHREDGGARGPDVPDAAHAVRQPDPLAQHPAEPRQPHLPRH
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mRNA from alignment at E_fasciculatus_S2_contig8723:1508..2337-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8723.16829.1 ID=mRNA_E_fasciculatus_S2_contig8723.16829.1|Name=mRNA_E_fasciculatus_S2_contig8723.16829.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=830bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8723:1508..2337- (Ectocarpus fasciculatus EfasUO2)
GATGGTGGAATCCCACGTGGGTACGCTGGAGCTGGTGAGGCCCGGAGACG
TGGTGGAGCTGGTGGAAGGGATGCAAGACCTGTACATCATGGGCACGGTA
GACGGGTTCCAGAAGGTCACCAAGATGGATGGGTTGCAAGACATGTCATC
CCTCACGGTGAGTCGAGTCGATTCGGACTGGGCGAGGCAACACACATACT
TCACGTACACAGAAGCGGAGCAAGACTTAACTCTCGTTTTGGTGTTGCAG
GCTGGCAGATAGAGGCTTTCGACTACTGAGTCAACTGTACGCTGACTTCA
TATTGTACAGTTGTAGTCTACGGGGTTAGCCTTTGTCTAACGAAGATGTG
GACGCGGGTCCTGACTGAGTAGTCTACTGGTTTGACCTTGATCTCACGCG
GGTGGTGGTATGGGTGGCGTTTTGGTCTCTGGCTGTAGTGTTGTGGAGTA
ATGGGGCGTGCAAGAGGAGGGGGTGGGTGCGTACCCATGTTTTTGCATGC
CTTAGCTGTTCGAGGGGGGTTCGGCCCCACAGGACAGATCGCCGAAGGCC
CATCGTCCCCTCCTACTTTGCCAAAGTTGAGCTCACTGAACTAGTAATAA
TAGTTGAACGTTTTTGCTCCTTGTCTGTTTGTCTCCCTGTCTGTCTCCCG
CTGTCTCCCTCTCTCTCTCGCTCTTAATCGTCTCTAGGAAATGACCCTGC
AGTCGTGCCTCATCGCGAAGATGGAGGGGCTCGAGGGCCTGACGTCCCTG
ACGCGGCTCACGCTGTACGACAACCAGATCCTCTCGCTCAACATCCCGCC
GAGCCTCGGCAGCCTCACCTACCTCGACAT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8723:1508..2337-

>mRNA_E_fasciculatus_S2_contig8723.16829.1 ID=mRNA_E_fasciculatus_S2_contig8723.16829.1|Name=mRNA_E_fasciculatus_S2_contig8723.16829.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=300bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8723:1508..2337- (Ectocarpus fasciculatus EfasUO2)
GATGGTGGAATCCCACGTGGGTACGCTGGAGCTGGTGAGGCCCGGAGACG
TGGTGGAGCTGGTGGAAGGGATGCAAGACCTGTACATCATGGGCACGGTA
GACGGGTTCCAGAAGGTCACCAAGATGGATGGGTTGCAAGACATGTCATC
CCTCACGGAAATGACCCTGCAGTCGTGCCTCATCGCGAAGATGGAGGGGC
TCGAGGGCCTGACGTCCCTGACGCGGCTCACGCTGTACGACAACCAGATC
CTCTCGCTCAACATCCCGCCGAGCCTCGGCAGCCTCACCTACCTCGACAT
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