mRNA_E_fasciculatus_S2_contig8700.16811.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8700.16811.1
Unique NamemRNA_E_fasciculatus_S2_contig8700.16811.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8700.16811.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW93_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 7.520e-17
Identity = 49/55 (89.09%), Postives = 50/55 (90.91%), Query Frame = 1 
Query:    1 SAAIVHALLAEGAQPNLRGGEDGKTALDLATVGGHAEAVTALVQHRASLNSTDKL 165
            SAAIVH LLAEGAQPNLRGGEDGKTALDLATVGGHAEAVTAL+ HR SLN  DKL
Sbjct:  363 SAAIVHVLLAEGAQPNLRGGEDGKTALDLATVGGHAEAVTALLLHRPSLNVMDKL 417
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BLAST of mRNA_E_fasciculatus_S2_contig8700.16811.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6J8_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 2.260e-16
Identity = 47/55 (85.45%), Postives = 49/55 (89.09%), Query Frame = 1 
Query:    4 AAIVHALLAEGAQPNLRGGEDGKTALDLATVGGHAEAVTALVQHRASLNSTDKLG 168
            AAIVH LLA GAQPNLRGGEDGKTALDLA +G H EA TALVQHRASLN+TDKLG
Sbjct:  214 AAIVHVLLATGAQPNLRGGEDGKTALDLAALGRHVEAATALVQHRASLNATDKLG 268
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BLAST of mRNA_E_fasciculatus_S2_contig8700.16811.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ90_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 1.770e-9
Identity = 32/45 (71.11%), Postives = 35/45 (77.78%), Query Frame = 2 
Query:  845 FDPRRGPPHCTWQLLVPPKSWNSFSNTARTRILEIRLVALHSTWP 979
            F   RGPPHCTW L+VPPKSW + SNTARTR LE+ L ALHST P
Sbjct:  378 FATSRGPPHCTWLLVVPPKSWRNCSNTARTRRLEMCLTALHSTRP 422
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8700.16811.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized7.520e-1789.09protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.260e-1685.45protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.770e-971.11protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8700contigE_fasciculatus_S2_contig8700:2..983 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size982
Hectar predicted targeting categoryother localisation
Exons1
Cds size981
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842527.0156336-CDS-E_fasciculatus_S2_contig8700:1..9821696842527.0156336-CDS-E_fasciculatus_S2_contig8700:1..982Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8700 2..982 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8700.16811.1prot_E_fasciculatus_S2_contig8700.16811.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8700 2..982 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8700.16811.1

>prot_E_fasciculatus_S2_contig8700.16811.1 ID=prot_E_fasciculatus_S2_contig8700.16811.1|Name=mRNA_E_fasciculatus_S2_contig8700.16811.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=327bp
SAAIVHALLAEGAQPNLRGGEDGKTALDLATVGGHAEAVTALVQHRASLN
STDKLGRTAMHSAASNNNVAVIDVLAAAGANVDARDKECWTPLHYASSEG
CAEAVTALMRHGSGGNCFHAEGESPLHLAVRDDHSAAVTALLVGGANPNL
LNTDGESPLYLAACYMWPDVLKVLLQNGAGAKETGTSGATVLHIAASEEN
VEVVEALIAAGADLEAEDGDGVTPLHRALACGHHEVVLALLKYGADRTKL
AVNGDGGLHAAAKGGNVSCVELFLANGADLNLRSEAGSTALHVAASRSAE
VVEQLLQHGADPDSRDSTGRTPLHMAT
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mRNA from alignment at E_fasciculatus_S2_contig8700:2..983+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8700.16811.1 ID=mRNA_E_fasciculatus_S2_contig8700.16811.1|Name=mRNA_E_fasciculatus_S2_contig8700.16811.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=982bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8700:2..983+ (Ectocarpus fasciculatus EfasUO2)
AGCGCCGCCATCGTTCATGCACTCCTGGCCGAGGGTGCACAGCCAAACCT
TCGTGGTGGTGAGGACGGAAAGACCGCGTTGGACCTTGCCACGGTTGGGG
GGCATGCTGAGGCGGTGACAGCTTTAGTCCAGCACCGGGCGAGCTTGAAT
TCGACGGACAAGCTTGGCCGTACTGCCATGCACTCTGCTGCCTCCAACAA
CAATGTGGCGGTCATCGATGTTCTGGCCGCCGCCGGGGCTAACGTGGATG
CCAGGGACAAGGAGTGCTGGACGCCTCTCCATTACGCGTCATCTGAAGGG
TGCGCTGAGGCTGTCACCGCGCTTATGAGGCACGGGAGTGGTGGCAACTG
TTTTCACGCCGAGGGTGAATCGCCGCTCCACCTTGCCGTACGTGATGACC
ATAGCGCTGCTGTGACCGCCCTCTTGGTCGGCGGTGCGAATCCTAACCTC
CTCAACACAGACGGCGAGTCTCCGTTGTACCTGGCTGCATGTTATATGTG
GCCAGATGTACTGAAGGTGTTGCTTCAGAATGGCGCGGGCGCGAAGGAAA
CCGGCACCAGTGGAGCCACCGTCTTGCACATAGCTGCTTCCGAGGAAAAT
GTGGAGGTAGTTGAAGCACTCATCGCTGCAGGGGCCGACCTCGAGGCGGA
GGATGGCGACGGCGTTACTCCTCTTCACCGTGCTCTTGCTTGCGGGCATC
ATGAAGTCGTCCTCGCTCTGTTGAAGTACGGCGCTGACCGCACCAAGCTG
GCGGTCAACGGCGATGGTGGCCTTCATGCGGCCGCGAAAGGGGGTAACGT
ATCCTGCGTAGAGCTATTTCTCGCCAACGGTGCGGACCTCAATCTTCGAT
CCGAGGCGGGGTCCACCGCACTGCACGTGGCAGCTTCTCGTTCCGCCGAA
GTCGTGGAACAGCTTCTCCAACACGGCGCGGACCCGGATTCTCGAGATTC
GACTGGTCGCACTCCACTCCACATGGCCACCA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8700:2..983+

>mRNA_E_fasciculatus_S2_contig8700.16811.1 ID=mRNA_E_fasciculatus_S2_contig8700.16811.1|Name=mRNA_E_fasciculatus_S2_contig8700.16811.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=981bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8700:2..983+ (Ectocarpus fasciculatus EfasUO2)
AGCGCCGCCATCGTTCATGCACTCCTGGCCGAGGGTGCACAGCCAAACCT
TCGTGGTGGTGAGGACGGAAAGACCGCGTTGGACCTTGCCACGGTTGGGG
GGCATGCTGAGGCGGTGACAGCTTTAGTCCAGCACCGGGCGAGCTTGAAT
TCGACGGACAAGCTTGGCCGTACTGCCATGCACTCTGCTGCCTCCAACAA
CAATGTGGCGGTCATCGATGTTCTGGCCGCCGCCGGGGCTAACGTGGATG
CCAGGGACAAGGAGTGCTGGACGCCTCTCCATTACGCGTCATCTGAAGGG
TGCGCTGAGGCTGTCACCGCGCTTATGAGGCACGGGAGTGGTGGCAACTG
TTTTCACGCCGAGGGTGAATCGCCGCTCCACCTTGCCGTACGTGATGACC
ATAGCGCTGCTGTGACCGCCCTCTTGGTCGGCGGTGCGAATCCTAACCTC
CTCAACACAGACGGCGAGTCTCCGTTGTACCTGGCTGCATGTTATATGTG
GCCAGATGTACTGAAGGTGTTGCTTCAGAATGGCGCGGGCGCGAAGGAAA
CCGGCACCAGTGGAGCCACCGTCTTGCACATAGCTGCTTCCGAGGAAAAT
GTGGAGGTAGTTGAAGCACTCATCGCTGCAGGGGCCGACCTCGAGGCGGA
GGATGGCGACGGCGTTACTCCTCTTCACCGTGCTCTTGCTTGCGGGCATC
ATGAAGTCGTCCTCGCTCTGTTGAAGTACGGCGCTGACCGCACCAAGCTG
GCGGTCAACGGCGATGGTGGCCTTCATGCGGCCGCGAAAGGGGGTAACGT
ATCCTGCGTAGAGCTATTTCTCGCCAACGGTGCGGACCTCAATCTTCGAT
CCGAGGCGGGGTCCACCGCACTGCACGTGGCAGCTTCTCGTTCCGCCGAA
GTCGTGGAACAGCTTCTCCAACACGGCGCGGACCCGGATTCTCGAGATTC
GACTGGTCGCACTCCACTCCACATGGCCACC
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