mRNA_E_fasciculatus_S2_contig8666.16779.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8666.16779.1
Unique NamemRNA_E_fasciculatus_S2_contig8666.16779.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8666.16779.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQH2_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 3.640e-32
Identity = 56/60 (93.33%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:  208 QYIFANGDIYDGDFRRDQACGQGVYRTASLGNGAGDCYVGGWEADRRHGKGLLRWENGSR 387
            +YIFANGD+YDGDFRRD+ACGQGVYRTAS GNGAGDCYVGGWEADRRHGKGLLRWENGSR
Sbjct:   27 RYIFANGDVYDGDFRRDRACGQGVYRTASSGNGAGDCYVGGWEADRRHGKGLLRWENGSR 86
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BLAST of mRNA_E_fasciculatus_S2_contig8666.16779.1 vs.
Match: MORN (repeat variant family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWY6_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 1.730e-28
Identity = 63/106 (59.43%), Postives = 65/106 (61.32%), Query Frame = 1 
Query:   70 VSPGGRERYVGEWWNGKKHGYGSRADVTNRSENTNRTNKLGAGTTSQYIFANGDIYDGDFRRDQACGQGVYRTASLGNGAGDCYVGGWEADRRHGKGLLRWENGSR 387
            VSPGGRERYV                                       FANGD+YDGDFRRD+ACGQGVYRTAS GNGAGDCYVGGWEADRRHGKG LRWENGSR
Sbjct:  605 VSPGGRERYVXXXX------------------------XXXXXXXXXXXFANGDVYDGDFRRDRACGQGVYRTASSGNGAGDCYVGGWEADRRHGKGRLRWENGSR 686
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8666.16779.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized3.640e-3293.33protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
MORN1.730e-2859.43repeat variant family protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8666contigE_fasciculatus_S2_contig8666:607..2172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score122.5
Seed ortholog evalue2e-25
Seed eggNOG ortholog2880.D7FWY6
Model size528
KEGG koko:K03283
KEGG TC1.A.33.1
KEGG Pathwayko03040,ko04010,ko04141,ko04144,ko04213,ko04612,ko04915,ko05134,ko05145,ko05162,ko05164,ko05169,map03040,map04010,map04141,map04144,map04213,map04612,map04915,map05134,map05145,map05162,map05164,map05169
KEGG ModuleM00353,M00355
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.Translation initiation factor IF-2, N-terminal region
EggNOG OGsCOG4642@1,COG5253@1,KOG0229@2759,KOG0231@2759
Cds size528
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01009,ko03009,ko03029,ko03041,ko03051,ko03110,ko04131,ko04147,ko04516
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842523.6741285-CDS-E_fasciculatus_S2_contig8666:606..7431696842523.6741285-CDS-E_fasciculatus_S2_contig8666:606..743Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8666 607..743 +
1696842523.6943665-CDS-E_fasciculatus_S2_contig8666:948..10201696842523.6943665-CDS-E_fasciculatus_S2_contig8666:948..1020Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8666 949..1020 +
1696842523.7052453-CDS-E_fasciculatus_S2_contig8666:1212..13961696842523.7052453-CDS-E_fasciculatus_S2_contig8666:1212..1396Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8666 1213..1396 +
1696842523.7160444-CDS-E_fasciculatus_S2_contig8666:2037..21721696842523.7160444-CDS-E_fasciculatus_S2_contig8666:2037..2172Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8666 2038..2172 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8666.16779.1prot_E_fasciculatus_S2_contig8666.16779.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8666 607..2172 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8666.16779.1

>prot_E_fasciculatus_S2_contig8666.16779.1 ID=prot_E_fasciculatus_S2_contig8666.16779.1|Name=mRNA_E_fasciculatus_S2_contig8666.16779.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=176bp
TANDAGRFAGQWERNMQQGFGVYVSPGGRERYVGEWWNGKKHGYGSRADV
TNRSENTNRTNKLGAGTTSQYIFANGDIYDGDFRRDQACGQGVYRTASLG
NGAGDCYVGGWEADRRHGKGLLRWENGSRYEGYWKAGAIEGKGVFDYAQG
DKYRGEFKASRKHGNGVYVWANGDR*
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mRNA from alignment at E_fasciculatus_S2_contig8666:607..2172+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8666.16779.1 ID=mRNA_E_fasciculatus_S2_contig8666.16779.1|Name=mRNA_E_fasciculatus_S2_contig8666.16779.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1566bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8666:607..2172+ (Ectocarpus fasciculatus EfasUO2)
ACGGCGAATGACGCGGGCAGGTTTGCAGGGCAGTGGGAGCGCAACATGCA
ACAGGGGTTCGGGGTGTACGTGTCCCCGGGGGGGCGAGAGCGTTACGTGG
GCGAATGGTGGAATGGCAAGAAGCACGGCTACGGCAGGTGACTTTCTTCA
ACATTGACAGGCATCGTTGTAAACGTTCGTTCATGCTGCTCTCTGGATTG
TCATTGGTTGGGGATAGCGAAGAAGCCGTGCCTCTTCACGAAACGGAGAC
CCATGCCTCTTCCCAAAACGGAGACACCGTATAAAGGGTGTCAAGTACAA
TTTATGATCTCTCAACCACGTGCCAGGCACACGGCAATACAGTAGAGCCG
ATGTGACCAATCGGAGTGAAAACACCAACAGGACAAACAAACTTGGGGCG
GGAACGACGTCCCAGTGGGCTTGATTCATCCTTCCGAGACAACAAAAGCA
CCTCCCCGCCGCTACCTCCCAACATTTGTAGGGATGCGAGGTCCCTGACC
TCACGGCTACGGCATTCGTTTACATGCGTACCCCCCCCACCCGACCCCCG
CACACAAACCTTGGAAACACGAACGAACGAACGAACGAACGAACGAACAA
ACGAAGATACATCTTCGCGAACGGGGACATCTACGACGGAGATTTCCGAC
GAGACCAGGCGTGCGGGCAGGGGGTCTACCGGACCGCCTCTTTGGGCAAC
GGCGCGGGGGACTGTTATGTCGGGGGCTGGGAGGCCGATCGCCGGCACGG
AAAGGGGCTGCTGCGGTGGGAGAACGGCAGCAGATACGAGGTGTGCATCG
CCATCGTGTGGTGTGGTTGGAGAGAAGTTTTCACAGACCGCTACTACTGC
TGTTGTGCTGTAGTGTGATGAGAGAGAGTTTTTACAGACCGCGCGCTATG
TACTGCTGTTGATGTTTCACTTTCTGCGGTTCCGAGACACGGGGTGCGGT
GGTGGGAAAGGTGCTGTTGTGTGGAGAGAGCGGCGGGTTAGCAAGAGAGA
GAAATATGAGAGAACATCGTTTTTCAGCCTGCCACTAGTGATCGAGTATT
TCCCGAGGAGCGGGGAGCGGGGGTGTGTGTATAGATGATGGCCGACACAT
GTAAGGCGCGAGAAAATTTCGGCAAGTTGAGGTATTGTTGTTGATGTCGG
TGTCGTACCTGGTCTGTAGCACCCAAGGGATCTTCATGTTCATTTGGTGA
TGAAGCTCAGCCGCACAACAAGGTGCCTAGAAGTGAACTACCCCCTCTCC
GAACCAGTGGAGGCGGGAAAAAAGGCAACGGAAGGTATGGGGAGGGTATG
GTTGCTCTAAGAACACATTCACATTCCCAAGATAACCAGCTTTGGTGTTG
CCATAGCCATTCAATTTCTGCCGCCACCGCCACCACTACCATCACCACCA
CCAAAAACAACAACAACAATGTTTGCCACAGGGCTACTGGAAAGCGGGGG
CCATAGAGGGGAAAGGCGTGTTCGACTACGCGCAGGGGGACAAGTATCGC
GGAGAGTTTAAGGCCAGCAGGAAGCACGGCAACGGGGTCTACGTCTGGGC
AAACGGCGACAGGTAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8666:607..2172+

>mRNA_E_fasciculatus_S2_contig8666.16779.1 ID=mRNA_E_fasciculatus_S2_contig8666.16779.1|Name=mRNA_E_fasciculatus_S2_contig8666.16779.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=528bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8666:607..2172+ (Ectocarpus fasciculatus EfasUO2)
ACGGCGAATGACGCGGGCAGGTTTGCAGGGCAGTGGGAGCGCAACATGCA
ACAGGGGTTCGGGGTGTACGTGTCCCCGGGGGGGCGAGAGCGTTACGTGG
GCGAATGGTGGAATGGCAAGAAGCACGGCTACGGCAGTAGAGCCGATGTG
ACCAATCGGAGTGAAAACACCAACAGGACAAACAAACTTGGGGCGGGAAC
GACGTCCCAATACATCTTCGCGAACGGGGACATCTACGACGGAGATTTCC
GACGAGACCAGGCGTGCGGGCAGGGGGTCTACCGGACCGCCTCTTTGGGC
AACGGCGCGGGGGACTGTTATGTCGGGGGCTGGGAGGCCGATCGCCGGCA
CGGAAAGGGGCTGCTGCGGTGGGAGAACGGCAGCAGATACGAGGGCTACT
GGAAAGCGGGGGCCATAGAGGGGAAAGGCGTGTTCGACTACGCGCAGGGG
GACAAGTATCGCGGAGAGTTTAAGGCCAGCAGGAAGCACGGCAACGGGGT
CTACGTCTGGGCAAACGGCGACAGGTAA
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