mRNA_E_fasciculatus_S2_contig8661.16776.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8661.16776.1 vs.
Match: Amino (acid/peptide transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1M8_ECTSI) HSP 1 Score: 196 bits (498), Expect = 2.270e-57 Identity = 107/161 (66.46%), Postives = 108/161 (67.08%), Query Frame = 1
Query: 1 VSVFGADQFDEDDPGDVKEKQSFFNCMVLCFFLSFLAGVLLFLLFGTAVQRAXXXXXXXXXXXXXXXXXNDPAGRFYWSINLGALVSFTLVSYVCQYGLPFLGGPDWGFMAGYSIPCIAMSLALVVFLAGTPKYRRFPPSGSVVSRAAGVVAEACRKRCNA 483
VSVFGADQF+EDDP DVKEKQSFFN FYWSINLGALVSFTLVSYVCQYGL FLGGPDWGFMAGYSIPCIAMSLALVVFLAGTPKYRRFPPSGSVVSRAAGVV EACRKRCNA
Sbjct: 30 VSVFGADQFEEDDPADVKEKQSFFNW-------------------------------------------------FYWSINLGALVSFTLVSYVCQYGLSFLGGPDWGFMAGYSIPCIAMSLALVVFLAGTPKYRRFPPSGSVVSRAAGVVTEACRKRCNA 141
BLAST of mRNA_E_fasciculatus_S2_contig8661.16776.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9H6_9PHAE) HSP 1 Score: 200 bits (508), Expect = 3.070e-57 Identity = 109/162 (67.28%), Postives = 109/162 (67.28%), Query Frame = 1
Query: 1 VSVFGADQFDEDDPGDVKEKQSFFNCMVLCFFLSFLAGVLLFLLFGTAVQRAXXXXXXXXXXXXXXXXXNDPAGRFYWSINLGALVSFTLVSYVCQYGLPFLGGPDWGFMAGYSIPCIAMSLALVVFLAGTPKYRRFPPSGSVVSRAAGVVAEACRKRCNAA 486
VSVFGADQFDEDDP DV EKQSFFN FYWSINLGALVSFTLVSYVCQYGLPFLGGPDWGFMAGYSIPCIAMSLALVVFLAGTPKYRRFPPSGSVVSRAAGVV EACRKRCNAA
Sbjct: 198 VSVFGADQFDEDDPADVNEKQSFFNW-------------------------------------------------FYWSINLGALVSFTLVSYVCQYGLPFLGGPDWGFMAGYSIPCIAMSLALVVFLAGTPKYRRFPPSGSVVSRAAGVVTEACRKRCNAA 310
BLAST of mRNA_E_fasciculatus_S2_contig8661.16776.1 vs.
Match: Hypothetical (protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UH25_9STRA) HSP 1 Score: 122 bits (307), Expect = 1.870e-29 Identity = 68/162 (41.98%), Postives = 88/162 (54.32%), Query Frame = 1
Query: 1 VSVFGADQFDEDDPGDVKEKQSFFNCMVLCFFLSFLAGVLLFLLFGTAVQRAXXXXXXXXXXXXXXXXXNDPAGRFYWSINLGALVSFTLVSYVCQYGLPFLGGPDWGFMAGYSIPCIAMSLALVVFLAGTPKYRRFPPSGSVVSRAAGVVAEACRKRCNAA 486
VS FGADQFD+D+ D KEK+SFFN FYWSINLGAL+S+TLV+Y+CQYG+ LGG DWGF G+ IP ++M+LA++ F +GTPK+ PPSGS++S A G++ EA R N A
Sbjct: 103 VSTFGADQFDDDNEQDKKEKESFFNW-------------------------------------------------FYWSINLGALISYTLVAYICQYGIAGLGGEDWGFFIGFIIPAVSMALAILAFYSGTPKFTIKPPSGSILSAACGMIFEAAVTRRNEA 215
BLAST of mRNA_E_fasciculatus_S2_contig8661.16776.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GU63_9STRA) HSP 1 Score: 105 bits (262), Expect = 2.960e-24 Identity = 46/83 (55.42%), Postives = 63/83 (75.90%), Query Frame = 1
Query: 226 FYWSINLGALVSFTLVSYVCQYGLPFLGGPDWGFMAGYSIPCIAMSLALVVFLAGTPKYRRFPPSGSVVSRAAGVVAEACRKR 474
FYWSINLGAL+++T+V+Y+CQYGLP LGG WGF GY IP I + + + VF++ T KY + PP GS+VS+A G++ EA +R
Sbjct: 164 FYWSINLGALLAYTIVAYICQYGLPGLGGETWGFFVGYLIPTIFLGIGIAVFMSATTKYVKHPPQGSMVSKALGIMFEAVVRR 246
BLAST of mRNA_E_fasciculatus_S2_contig8661.16776.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pseudomonadales bacterium 32-42-5 TaxID=1970543 RepID=A0A258AGE5_9GAMM) HSP 1 Score: 101 bits (252), Expect = 1.010e-23 Identity = 62/128 (48.44%), Postives = 71/128 (55.47%), Query Frame = 1
Query: 1 VSVFGADQFDEDDPGDVKEKQSFFNCMVLCFFLSFLAGVLLFLLFGTAVQRAXXXXXXXXXXXXXXXXXNDPAGRFYWSINLGALVSFTLVSYVCQYGL-PFLGGPDWGFMAGYSIPCIAMSLALVVF 381
+S GADQFDE D KEK+SFFN VL L A ++LF L G A P RFYWSINLGAL+S+TLV+Y+CQYG P LGG WGF GY+IP I MS L F
Sbjct: 1 MSTLGADQFDERYSADRKEKESFFNWYVL---LVCNAMLILFFLLGDQRPHAFCKQFLSRPPHCSPFLLLPPPFRFYWSINLGALISYTLVAYICQYGAGPDLGGEKWGFFVGYTIPSIMMSKFLFCF 125
BLAST of mRNA_E_fasciculatus_S2_contig8661.16776.1 vs.
Match: Uncharacterized (protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UWI9_9ARCH) HSP 1 Score: 92.8 bits (229), Expect = 3.570e-21 Identity = 54/120 (45.00%), Postives = 66/120 (55.00%), Query Frame = 1
Query: 1 VSVFGADQFDEDDPGDVKEKQSFFNCMVLCFFLSFLAGVLLFLLFGTAVQRAXXXXXXXXXXXXXXXXXNDPAGRFYWSINLGALVSFTLVSYVCQYGLPFLGGPDWGFMAGYSIPCIAM 360
V GADQFD+ D KEK+SFFN +VL +A V + ++ A RFYWSINLG+L+S+TLV+Y+CQYGLPFLGG WGF GY IP I M
Sbjct: 17 VCTMGADQFDDRYTQDRKEKESFFNWLVL------IAVVNNYYIYCHKPHTAYFIRHTPYTSNRFYLYR-----RFYWSINLGSLISYTLVAYICQYGLPFLGGEKWGFFVGYCIPAIMM 125
BLAST of mRNA_E_fasciculatus_S2_contig8661.16776.1 vs.
Match: POT (family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK04_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 8.170e-19 Identity = 42/80 (52.50%), Postives = 64/80 (80.00%), Query Frame = 1
Query: 226 FYWSINLGALVSFTLVSYVCQYGLPFLGGPDWGFMAGYSIPCIAMSLALVVFLAGTPKYRRFPP-SGSVVSRAAGVVAEA 462
FY SINLGAL+S++LV+Y+CQYG+ LGG WGF G++IPCIAM++A+V+F+AG+ +Y P GS++S++A ++ +A
Sbjct: 111 FYGSINLGALISYSLVAYICQYGVGGLGGEPWGFTVGFTIPCIAMAIAIVLFVAGSRRYTICGPVGGSMMSKSAAIIKDA 190
BLAST of mRNA_E_fasciculatus_S2_contig8661.16776.1 vs.
Match: Peptide (transporter ptr1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJG8_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 4.210e-14 Identity = 36/82 (43.90%), Postives = 56/82 (68.29%), Query Frame = 1
Query: 226 FYWSINLGALVSFTLVSYVCQYGLPFLGGPDWGFMAGYSIPCIAMSLALVVFLAGTPKYRRFPPSGSVVSRAAGVVAEACRK 471
FY +IN GAL+SFTLV + QYG+ ++GG D+ F G+S+ I + + +FL G +Y + PPSGSV++R+ ++ +A RK
Sbjct: 221 FYAAINCGALISFTLVVSITQYGVSWIGGMDYRFSVGFSVAAIITTCGIAIFLFGRHRYTKLPPSGSVLARSLSILLQAARK 302
BLAST of mRNA_E_fasciculatus_S2_contig8661.16776.1 vs.
Match: Hypothetical (protein n=1 Tax=Picochlorum oklahomense TaxID=249345 RepID=A0A7S1CW14_9CHLO) HSP 1 Score: 67.4 bits (163), Expect = 5.710e-10 Identity = 51/157 (32.48%), Postives = 70/157 (44.59%), Query Frame = 1
Query: 1 VSVFGADQFDEDDPGDVKEKQSFFNCMVLCFFLSFLAGVLLFLLFGTAVQRAXXXXXXXXXXXXXXXXXNDPAGRFYWSINLGALVSFTLVSYVCQYGLPFLGGPDWGFMAGYSIPCIAMSLALVVFLAGTPKYRRFPPSGSVVSRAAGVVAEACRK 471
VS FGADQFDE DP D KEK+SFFN FY+SIN+G+L++ T + ++ + W G+ IP IAM++A+V F+AG+P+YR PS S +SR V A R+
Sbjct: 156 VSAFGADQFDELDPRDRKEKKSFFNW-------------------------------------------------FYFSINVGSLLAVTGIVWIQE-------NVSWAI--GFVIPAIAMAVAVVTFIAGSPRYRHVKPSESPISRVYRVTIAAWRE 254
BLAST of mRNA_E_fasciculatus_S2_contig8661.16776.1 vs.
Match: Uncharacterized (protein n=15 Tax=50 kb inversion clade TaxID=2231393 RepID=I1K3A6_SOYBN) HSP 1 Score: 66.2 bits (160), Expect = 1.410e-9 Identity = 51/158 (32.28%), Postives = 67/158 (42.41%), Query Frame = 1
Query: 1 VSVFGADQFDEDDPGDVKEKQSFFNCMVLCFFLSFLAGVLLFLLFGTAVQRAXXXXXXXXXXXXXXXXXNDPAGRFYWSINLGALVSFTLVSYVCQYGLPFLGGPDWGFMAGYSIPCIAMSLALVVFLAGTPKYRRFPPSGSVVSRAAGVVAEACRKR 474
VS FGADQFD+ DPG+ +K SFFN FY+SIN+GALVS T + ++ + WG G+ IP + M+LA+ F GTP YR P GS ++R VV + RKR
Sbjct: 178 VSSFGADQFDDTDPGERIKKGSFFNW-------------------------------------------------FYFSINIGALVSSTFIVWIQE-------NAGWGL--GFGIPALFMALAIGSFFLGTPLYRFQKPGGSPITRMCQVVVASVRKR 277 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8661.16776.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8661.16776.1 >prot_E_fasciculatus_S2_contig8661.16776.1 ID=prot_E_fasciculatus_S2_contig8661.16776.1|Name=mRNA_E_fasciculatus_S2_contig8661.16776.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=171bp VSVFGADQFDEDDPGDVKEKQSFFNCMVLCFFLSFLAGVLLFLLFGTAVQback to top mRNA from alignment at E_fasciculatus_S2_contig8661:1777..3454+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig8661.16776.1 ID=mRNA_E_fasciculatus_S2_contig8661.16776.1|Name=mRNA_E_fasciculatus_S2_contig8661.16776.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1678bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8661:1777..3454+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8661:1777..3454+ >mRNA_E_fasciculatus_S2_contig8661.16776.1 ID=mRNA_E_fasciculatus_S2_contig8661.16776.1|Name=mRNA_E_fasciculatus_S2_contig8661.16776.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=513bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8661:1777..3454+ (Ectocarpus fasciculatus EfasUO2)back to top |