mRNA_E_fasciculatus_S2_contig8660.16774.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8660.16774.1
Unique NamemRNA_E_fasciculatus_S2_contig8660.16774.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8660.16774.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDE7_9PHAE)

HSP 1 Score: 414 bits (1065), Expect = 1.110e-142
Identity = 241/314 (76.75%), Postives = 257/314 (81.85%), Query Frame = 1 
Query:  106 YLILAANLCWVLTTAPPLRSARTALFALVAFGLLLEKSLCGGDDRSGLDGRVHIVDWLVSGLKWASPGTFAAATWAKV------FTQEKIRWLTFQAGAVILGHTLASYYLPSLELGQLASSLMAAWNNTRNGD-SRNDDHRGTSRSREGRDGGGNGSTADDRRTDGPQLLRLLQFGRGSGDRDDGAAARGGHSHTSATRNHA--AVDSDGSEDSNIGS-GSVHDDGDHSGRLGAREPVTPGPGTAGNGSNNGGGSRRASERGGTRTDGLDGLKRQELQSLAKTTDGVVRANLSTPNIIRGLRELGITRDALDH 1017
            YLILAANLCWVLTTAPPLRSARTALFALVAFGLLLEKSLCGGDDR GLDG +  VDWL+SGL+WASPGTFAAATWAKV      FTQEKIRWLTFQAGAVILGH L SYYLPSLELG+LASSL+AAW  +RNGD SRNDDHRGTSRSRE     G+GS  DDRRTDG QLLR L  GRGSGDRD+G  AR GH  +   RNHA  +   DG++D +I   GSV DD D+SG LGAR+PVTPGPG A NGS NGG SRRAS +G  R DGLDGLKRQELQSLAK TDGVVRANLST NIIRGLRELGIT DALDH
Sbjct:    4 YLILAANLCWVLTTAPPLRSARTALFALVAFGLLLEKSLCGGDDRGGLDG-LERVDWLLSGLRWASPGTFAAATWAKVANRLKVFTQEKIRWLTFQAGAVILGHALTSYYLPSLELGRLASSLLAAWMKSRNGDNSRNDDHRGTSRSRE-----GHGSATDDRRTDGLQLLRPLTVGRGSGDRDNGTVARTGHGRS---RNHAGESFQHDGNQDDSINDDGSVQDDIDNSGGLGARQPVTPGPGRAANGSGNGG-SRRASGQGNARADGLDGLKRQELQSLAKKTDGVVRANLSTLNIIRGLRELGITEDALDH 307
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BLAST of mRNA_E_fasciculatus_S2_contig8660.16774.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGF6_ECTSI)

HSP 1 Score: 394 bits (1012), Expect = 7.330e-131
Identity = 230/327 (70.34%), Postives = 244/327 (74.62%), Query Frame = 1 
Query:   61 LDNASSAWARFQAFT-----YLILAANLCWVLTTAPPLRSARTALFALVAFGLLLEKSLCGGDDRSGLDGRVHIVDWLVSGLKWASPGTFAAATWAKVFTQEKIRWLTFQAGAVILGHTLASYYLPSLELGQLASSLMAAWNNTRNGDSRNDDHRGTSRSREGRDGGGNGSTADDRRTDGPQLLRLLQFGRGSGDRDDGAAARGGHSHTSATRNHA--AVDSDGSEDSNIGS-GSVHDDGDHSGRLGAREPVTPGPGTAGNGSNNGGGSRRASERGGTRTDGLDGLKRQELQSLAKTTDGVVRANLSTPNIIRGLRELGITRDALDH 1017
            L+NA S  A +         YLILAANLCWVLTTAPPLRSARTALFALVAFGLLLEKSLCGGDDR GLDG +  VDWLVSGLKWASPGTFAAATWAKVFTQEKIRWLTFQAGAVIL HTL SYYLPSLELG+LASSL+AAW N+RNGDSRNDDHR                                  GRG GDRDDG AAR GH H+   R+HA  +   DG++D      GSV DD  +SGRLGAREPVTPGPG AGNGS+NGG SRRAS +G TR DGLDGLKRQELQSLAK TDGVVRANLST NIIRGLRELGIT DALDH
Sbjct:  283 LNNAKSDLASYMEAIEEDRRYLILAANLCWVLTTAPPLRSARTALFALVAFGLLLEKSLCGGDDRGGLDG-LERVDWLVSGLKWASPGTFAAATWAKVFTQEKIRWLTFQAGAVILSHTLTSYYLPSLELGRLASSLLAAWKNSRNGDSRNDDHR---------------------------------VGRGRGDRDDGTAARSGHDHS---RHHAGESFQHDGNQDDTTNDDGSVQDDNSNSGRLGAREPVTPGPGRAGNGSSNGG-SRRASGQGNTRADGLDGLKRQELQSLAKKTDGVVRANLSTLNIIRGLRELGITEDALDH 571
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8660.16774.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.110e-14276.75protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized7.330e-13170.34protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8660contigE_fasciculatus_S2_contig8660:227..3167 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score398.3
Seed ortholog evalue3.5e-108
Seed eggNOG ortholog2880.D8LGF6
Model size1020
KEGG koko:K18171,ko:K18626
Hectar predicted targeting categorysignal anchor
GOsGO:0000003,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0007275,GO:0008150,GO:0009553,GO:0009555,GO:0009790,GO:0009791,GO:0009793,GO:0010154,GO:0016020,GO:0016021,GO:0022414,GO:0031224,GO:0031226,GO:0032501,GO:0032502,GO:0042802,GO:0044425,GO:0044459,GO:0044464,GO:0048229,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0061458,GO:0071944
Exons5
EggNOG OGs28IPK@1,2QR0N@2759
Ec32 ortholog descriptionNuclear fusion protein, KAR5
Ec32 orthologEc-16_003860.1
Cds size990
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029,ko04812
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8660.16774.1prot_E_fasciculatus_S2_contig8660.16774.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8660 257..3167 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842523.2470336-UTR-E_fasciculatus_S2_contig8660:226..2561696842523.2470336-UTR-E_fasciculatus_S2_contig8660:226..256Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8660 227..256 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842523.2607012-CDS-E_fasciculatus_S2_contig8660:256..3301696842523.2607012-CDS-E_fasciculatus_S2_contig8660:256..330Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8660 257..330 +
1696842523.2714972-CDS-E_fasciculatus_S2_contig8660:890..10531696842523.2714972-CDS-E_fasciculatus_S2_contig8660:890..1053Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8660 891..1053 +
1696842523.2826402-CDS-E_fasciculatus_S2_contig8660:1398..14671696842523.2826402-CDS-E_fasciculatus_S2_contig8660:1398..1467Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8660 1399..1467 +
1696842523.2934415-CDS-E_fasciculatus_S2_contig8660:1988..25551696842523.2934415-CDS-E_fasciculatus_S2_contig8660:1988..2555Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8660 1989..2555 +
1696842523.3043725-CDS-E_fasciculatus_S2_contig8660:3050..31671696842523.3043725-CDS-E_fasciculatus_S2_contig8660:3050..3167Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8660 3051..3167 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8660.16774.1

>prot_E_fasciculatus_S2_contig8660.16774.1 ID=prot_E_fasciculatus_S2_contig8660.16774.1|Name=mRNA_E_fasciculatus_S2_contig8660.16774.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=330bp
METIGFIHDCLDNASSAWARFQAFTYLILAANLCWVLTTAPPLRSARTAL
FALVAFGLLLEKSLCGGDDRSGLDGRVHIVDWLVSGLKWASPGTFAAATW
AKVFTQEKIRWLTFQAGAVILGHTLASYYLPSLELGQLASSLMAAWNNTR
NGDSRNDDHRGTSRSREGRDGGGNGSTADDRRTDGPQLLRLLQFGRGSGD
RDDGAAARGGHSHTSATRNHAAVDSDGSEDSNIGSGSVHDDGDHSGRLGA
REPVTPGPGTAGNGSNNGGGSRRASERGGTRTDGLDGLKRQELQSLAKTT
DGVVRANLSTPNIIRGLRELGITRDALDH*
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mRNA from alignment at E_fasciculatus_S2_contig8660:227..3167+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8660.16774.1 ID=mRNA_E_fasciculatus_S2_contig8660.16774.1|Name=mRNA_E_fasciculatus_S2_contig8660.16774.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2941bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8660:227..3167+ (Ectocarpus fasciculatus EfasUO2)
AGGGCAACAAAGGACCAAAATCACGACCTAATGGAAACGATCGGGTTTAT
CCACGACTGCCTGGACAACGCCAGCTCTGCATGGGCCAGGTTCCAGGCGT
TCACGTGCGCAAACGTCTATTTGGCATAGCAAACAGGGTGCATGGGCAAC
CCCAGAGAGATATTAAACGCGAACGAAGCAGAAGGGACAAAATAAGGGTT
TGGTATGGAGGCCATACAGTAAATTAACGAAAAGAGAGCGAGGGGACGCG
GGCGGGAGCGGGGGCGTAATGTAGGCCACGGGCGACCTTGTTGCGACACG
ATCGATGTCCTTTGACAAGCCACACCTGGGGCTTTCTACTCGCCAGGCGG
GACCCTGCTCTCGTCGTCGCACTTCACACGCACCCACTCCTTCTGTGCAA
AAGAGCACGTGCCCGCTAGTGCTTCGCAAACAGAACGCGGTGCCACCACT
TAAGAACCTCTTTTGGTTGGCCGAGGCTCGTTTCTTATTTTGTCCATGGG
GCCCTACGGCAACTAGATTGGCTATAGTGTAGAGTTCTTGACTGAGCATG
CATACACCACCTGTTCTTATGGCCAACTTCTTGTTTTTTTCTTTGTTGAG
GTTTTTCTCCAAGGTAAGTTCTCAAGTGGTGGTCCGTTCCATAACGTTTG
CCACTTTCCCCCAGGTACCTTATCCTCGCGGCGAACCTCTGCTGGGTGCT
GACCACCGCCCCTCCGCTCCGCTCGGCAAGGACGGCTCTCTTCGCGCTCG
TCGCTTTCGGTCTCCTGCTCGAGAAGAGCCTGTGCGGCGGTGACGACCGC
AGTGGCTTGGACGGAAGGGTACACATTGTTACACCCATGCGCTTGGAAGG
GTACACATTGTTTCACCCGTATGGTGCCCCCCAGTTAGTTGCCTCTGGTT
GTTTTCTCGAGAAAGCGTCTCCGCGGAAGTGTTGTTTCAGAACGCGGAAC
TCGGGCGTCGCCCCCAACAAGGGTTTTGAGCGTCGAAATCAAGTTAAATG
TGGAGTGAACCGCTAAGGGACCGCGATTTTCCCTCTCCTGGGTGTCGAAG
GGCGGAGATATCCGTTATCGAGGCATGGGGGGAGTTTGTTGGGAGTATGC
AGGAATGCAATATATTGATTTTGTGGTCGTCGCGCAACTGTGGATACCCA
CACACAAATCGATAACTCGCAGGTCGACTGGCTGGTGTCCGGGCTCAAAT
GGGCGTCGCCCGGCACGTTCGCGGCAGCAACATGGGCGAAGGTGAAAGGT
TGGAATAATTCTGCATGAACTCCAGGACCAGGGTTGTTTTCGGGGGGGGG
TGACTTGGCTCTACTTTGTCCTGTAGTAAACAGTCGCGAGTATCAAGTGG
ATAATGCCCAAATTGTTCTACAGAAGCGAAGAGGGGAAAGGGCTCGAAGC
GATTTGAACAGCGACAAGATCGGTTCTCAAACCCATTGTCGCACGTTGGT
GGCTCCTTGTGCGGCTGGTCGCAAGGAAGGGCATATTTTCATCCTCAAGC
CTCGCCTCACTGATATATGAATGATATGAAAGTCTCTTTGACGGAGAATC
GGAGACCTATTGGTGGGGTTTGGCCTTCTTCGGAAACAGAGCAGTCGCCT
CAATCCCCTAAAGTATTCCTTACCTGTGGGTACGATATTGATCGGGTAAA
ACTGGTGGCCTGGCCACAACAGTTCCGACGTTTATCCCTTTAGCTGAAGG
CGACCAAAAAGTTACAGGTGGCGCTACCCGTCGCCCGCCCCCCCTGTTTT
GGTGCTGCGAAGGTTTTCACTCAGGAGAAAATCCGATGGCTGACGTTTCA
GGCTGGCGCTGTCATTCTCGGCCACACCCTTGCATCGTACTACCTCCCCT
CCCTGGAACTGGGGCAGCTTGCCAGTTCGCTAATGGCAGCGTGGAACAAC
ACTCGCAATGGCGACAGCAGAAACGACGATCATCGAGGCACGTCACGATC
AAGAGAAGGGCGCGACGGCGGCGGAAATGGTTCTACTGCCGATGACAGAC
GCACGGACGGACCACAGCTGCTTCGTCTGCTACAGTTCGGCCGCGGTAGC
GGCGACCGCGATGACGGTGCGGCCGCGAGGGGAGGCCACAGCCATACTTC
CGCCACAAGGAACCACGCCGCCGTAGATTCCGACGGCAGCGAGGACAGCA
ACATCGGTTCTGGATCGGTCCATGACGATGGTGATCACTCGGGCAGGCTC
GGTGCGAGGGAACCGGTCACGCCTGGACCGGGAACAGCTGGAAACGGGAG
TAACAATGGCGGCGGGAGCCGCAGGGCTTCGGAAAGGGGGGGCACAAGGA
CCGACGGGCTTGATGGTCTCAAGCGACAGGTACAGCCTGCTCCTTTGCTG
CATGCATGACTGCACTATGTTCGTCTGCAGGGAGACCTCGTTGACGCTAT
TTATGTCGAATTATCGACACAGGGCTGCAGGAGGAGTGAGTACGTCTCGA
CAGCCCCAACGTTTCCCCGACCTAACTGTGTGTGGGGGAGTTTAGTCGGT
TTCGCCAATTAAGTTGTAATGTCAGTTTTTTCCCAAAACCACTCCAACGA
CAAAGTTATGGATAGTTTCAGTTGTTGCCGAGGAGTTGATAGTCACTGTA
GGGCACATACCGGCGAAAGCCGTGATTGTACAACGCCACCACGATGAGGT
TGTGGTACAGTAGTCTAGTGAATATGTAGGGCATTCGAACACCACAGCAG
AAGTAGTTTTTTCCAACATAAAAGTACACAAAGGACAAAGAGAGCTAGCA
TTATCGACATGATACTTTGTTTCCGTTTCTCCATCATCAATATCCATGAT
GACGTCGTGCTCATTCCTCGGCAGGAGCTTCAATCGCTGGCCAAGACAAC
CGACGGCGTGGTAAGGGCCAACCTGTCAACCCCTAACATCATCAGGGGAC
TGCGGGAACTTGGCATCACAAGAGATGCGCTTGATCATTAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8660:227..3167+

>mRNA_E_fasciculatus_S2_contig8660.16774.1 ID=mRNA_E_fasciculatus_S2_contig8660.16774.1|Name=mRNA_E_fasciculatus_S2_contig8660.16774.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=990bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8660:227..3167+ (Ectocarpus fasciculatus EfasUO2)
ATGGAAACGATCGGGTTTATCCACGACTGCCTGGACAACGCCAGCTCTGC
ATGGGCCAGGTTCCAGGCGTTCACGTACCTTATCCTCGCGGCGAACCTCT
GCTGGGTGCTGACCACCGCCCCTCCGCTCCGCTCGGCAAGGACGGCTCTC
TTCGCGCTCGTCGCTTTCGGTCTCCTGCTCGAGAAGAGCCTGTGCGGCGG
TGACGACCGCAGTGGCTTGGACGGAAGGGTACACATTGTCGACTGGCTGG
TGTCCGGGCTCAAATGGGCGTCGCCCGGCACGTTCGCGGCAGCAACATGG
GCGAAGGTTTTCACTCAGGAGAAAATCCGATGGCTGACGTTTCAGGCTGG
CGCTGTCATTCTCGGCCACACCCTTGCATCGTACTACCTCCCCTCCCTGG
AACTGGGGCAGCTTGCCAGTTCGCTAATGGCAGCGTGGAACAACACTCGC
AATGGCGACAGCAGAAACGACGATCATCGAGGCACGTCACGATCAAGAGA
AGGGCGCGACGGCGGCGGAAATGGTTCTACTGCCGATGACAGACGCACGG
ACGGACCACAGCTGCTTCGTCTGCTACAGTTCGGCCGCGGTAGCGGCGAC
CGCGATGACGGTGCGGCCGCGAGGGGAGGCCACAGCCATACTTCCGCCAC
AAGGAACCACGCCGCCGTAGATTCCGACGGCAGCGAGGACAGCAACATCG
GTTCTGGATCGGTCCATGACGATGGTGATCACTCGGGCAGGCTCGGTGCG
AGGGAACCGGTCACGCCTGGACCGGGAACAGCTGGAAACGGGAGTAACAA
TGGCGGCGGGAGCCGCAGGGCTTCGGAAAGGGGGGGCACAAGGACCGACG
GGCTTGATGGTCTCAAGCGACAGGAGCTTCAATCGCTGGCCAAGACAACC
GACGGCGTGGTAAGGGCCAACCTGTCAACCCCTAACATCATCAGGGGACT
GCGGGAACTTGGCATCACAAGAGATGCGCTTGATCATTAG
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