mRNA_E_fasciculatus_S2_contig866.16773.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig866.16773.1
Unique NamemRNA_E_fasciculatus_S2_contig866.16773.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig866.16773.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIG6_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 2.290e-35
Identity = 66/71 (92.96%), Postives = 69/71 (97.18%), Query Frame = 1
Query:    1 QFSDHEMVRRAATEALCNLLPHPKMIDHLKLVDTLKLWAAFAQLGGEDPPTAAAALGCLAMAVRDPEVRKS 213
            QFSDHE+VRRAATEALCNLLPHPKMIDHL+LVDTLKLWAAFAQLG EDPPTAAAALGCLAMAVRDPEV K+
Sbjct:  923 QFSDHELVRRAATEALCNLLPHPKMIDHLRLVDTLKLWAAFAQLGEEDPPTAAAALGCLAMAVRDPEVAKN 993          
BLAST of mRNA_E_fasciculatus_S2_contig866.16773.1 vs.
Match: Uncharacterized (protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CF19_THAPS)

HSP 1 Score: 87.0 bits (214), Expect = 4.470e-18
Identity = 42/73 (57.53%), Postives = 54/73 (73.97%), Query Frame = 1
Query:    4 FSDHEMVRRAATEALCNLLPHPKMIDHLKLVDTLKLWAAFAQLGGEDPPTAAAALGCLAMAVRDPEVRKSELK 222
            FSDHEMVR+AATE LCN++PHP+M+D+L+  D LK+W AFA    E+   A AA+GCLAMAV DP   K  ++
Sbjct: 1038 FSDHEMVRKAATECLCNMVPHPEMMDYLEKPDNLKIWVAFASDYEENFQCARAAVGCLAMAVPDPNFAKGLIQ 1110          
BLAST of mRNA_E_fasciculatus_S2_contig866.16773.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z8N1_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.430e-16
Identity = 41/67 (61.19%), Postives = 49/67 (73.13%), Query Frame = 1
Query:    4 FSDHEMVRRAATEALCNLLPHPKMIDHLKLVDTLKLWAAFAQLGGEDPPTAAAALGCLAMAVRDPEV 204
            FSDH MVRRAATEA+ NL+PHPKM++HL   + +KLW AFA    E+   A AA GCLAMA +DP V
Sbjct:  110 FSDHLMVRRAATEAMSNLVPHPKMMEHLADPEKMKLWLAFASDFDENFECARAAAGCLAMASQDPNV 176          
BLAST of mRNA_E_fasciculatus_S2_contig866.16773.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BUQ0_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 3.760e-16
Identity = 38/63 (60.32%), Postives = 48/63 (76.19%), Query Frame = 1
Query:    1 QFSDHEMVRRAATEALCNLLPHPKMIDHLKLVDTLKLWAAFAQLGGEDPPTAAAALGCLAMAV 189
            QFSDHE+VRRAATE + NLLPHPK+++HL+  + +KLW  F++    D PTA AA G LAMAV
Sbjct:   36 QFSDHELVRRAATECMTNLLPHPKVVEHLRDPEKIKLWVGFSEDYEADFPTARAAAGALAMAV 98          
BLAST of mRNA_E_fasciculatus_S2_contig866.16773.1 vs.
Match: Protein (unc-45 homolog B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHR7_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.070e-14
Identity = 40/81 (49.38%), Postives = 52/81 (64.20%), Query Frame = 1
Query:    4 FSDHEMVRRAATEALCNLLPHPKMIDHLKLVDTLKLWAAFAQLGGEDPPTAAAALGCLAMAVRDPEVRKSELKRGGLYIVA 246
            FSDHE+VRRAATEA+ N+LPHP  + HL+  D  +LW AFA +  ED  TA AA G +AMA  D  V  + ++ G    +A
Sbjct:  931 FSDHELVRRAATEAMVNMLPHPDALQHLRSKDGARLWLAFAGIADEDRATALAAAGGIAMACGDEGVAAALVEAGAPQTLA 1011          
BLAST of mRNA_E_fasciculatus_S2_contig866.16773.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E0P8_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.790e-14
Identity = 35/60 (58.33%), Postives = 43/60 (71.67%), Query Frame = 1
Query:    4 FSDHEMVRRAATEALCNLLPHPKMIDHLKLVDTLKLWAAFAQLGGEDPPTAAAALGCLAM 183
            FSDHE+VR A TEA+CNL+PHP M+ +L   + L+LW AFA    E+   A AALGCLAM
Sbjct:    7 FSDHELVRTAGTEAMCNLIPHPAMMKYLSDAENLRLWLAFAASYEENFECARAALGCLAM 66          
BLAST of mRNA_E_fasciculatus_S2_contig866.16773.1 vs.
Match: Hypothetical (protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X189_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.780e-13
Identity = 40/78 (51.28%), Postives = 49/78 (62.82%), Query Frame = 1
Query:    1 QFSDHEMVRRAATEALCNLLPHPKMIDHLKLVDTLKLWAAFAQLGGE-DPPTAAAALGCLAMAVRDPEVRKSELKRGG 231
            QFSDH  V+RAATEALCN++P   MI HL   D +KLW A    G E D   A+AA+GCLAMA  D +V ++     G
Sbjct:  881 QFSDHPEVKRAATEALCNMVPDRSMIKHLSRSDKMKLWLALCHDGVENDARLASAAVGCLAMACSDVDVARAVASNNG 958          
BLAST of mRNA_E_fasciculatus_S2_contig866.16773.1 vs.
Match: Unc-45 (family protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WWS7_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 5.970e-13
Identity = 42/81 (51.85%), Postives = 57/81 (70.37%), Query Frame = 1
Query:    1 QFSDHEMVRRAATEALCNLLPHPKMIDHLKLVDT-LKLWAAFAQLG--GEDPPTAAAALGCLAMAVRDPEVRKSELKRGGL 234
            QFS+HE+VRRAATEA+CNLLP+ K+I+ + + D  ++LW AFA L    ED  TA AA G LAM  + P+V    +++GGL
Sbjct:  369 QFSEHELVRRAATEAICNLLPNDKVIEQVFMNDEKVRLWIAFASLEDEAEDFETARAAGGALAMVSQVPQVSWVIMRQGGL 449          
BLAST of mRNA_E_fasciculatus_S2_contig866.16773.1 vs.
Match: Uncharacterized (protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YJB5_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 6.190e-13
Identity = 43/88 (48.86%), Postives = 59/88 (67.05%), Query Frame = 1
Query:    1 QFSDHEMVRRAATEALCNLLPHPKMIDHLKL-VDTLKLWAAFAQLGGEDPP--TAAAALGCLAMAVRDPEVRKSELKRGGLYIVALCL 255
            QFS+HE+VRRAATEA+CNLLP+ ++I+ + +  + L+LW AFA L  ED    TA AA G LAM  + P+V    +++GGL   A  L
Sbjct:  919 QFSEHELVRRAATEAICNLLPNEQVIEQVFMNEEKLRLWLAFASLEEEDEDFETARAASGALAMVSQVPQVSWLLMRQGGLKSFASIL 1006          
BLAST of mRNA_E_fasciculatus_S2_contig866.16773.1 vs.
Match: UBC (core domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7KUW8_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 6.210e-13
Identity = 42/81 (51.85%), Postives = 57/81 (70.37%), Query Frame = 1
Query:    1 QFSDHEMVRRAATEALCNLLPHPKMIDHLKL-VDTLKLWAAFAQLG--GEDPPTAAAALGCLAMAVRDPEVRKSELKRGGL 234
            QFS+HE+VRRAATEA+CNLLP+ K+I+ + L  + ++LW AFA L    ED  TA AA G LAM  + P+V    +++GGL
Sbjct:  916 QFSEHELVRRAATEAICNLLPNDKVIEQVFLNEEKVRLWIAFASLEDEAEDFQTARAAGGALAMVSQVPQVSWLLMRKGGL 996          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig866.16773.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized2.290e-3592.96protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIG6... [more]
Uncharacterized4.470e-1857.53protein n=1 Tax=Thalassiosira pseudonana TaxID=351... [more]
Hypothetical1.430e-1661.19protein (Fragment) n=1 Tax=Pseudictyota dubia TaxI... [more]
Hypothetical3.760e-1660.32protein (Fragment) n=1 Tax=Florenciella parvula Ta... [more]
Protein1.070e-1449.38unc-45 homolog B n=1 Tax=Tribonema minus TaxID=303... [more]
Hypothetical1.790e-1458.33protein (Fragment) n=1 Tax=Thalassionema nitzschio... [more]
Hypothetical1.780e-1351.28protein n=1 Tax=Pelagomonas calceolata TaxID=35677... [more]
Unc-455.970e-1351.85family protein n=1 Tax=Phytophthora palmivora var.... [more]
Uncharacterized6.190e-1348.86protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID... [more]
UBC6.210e-1351.85core domain-containing protein n=3 Tax=Phytophthor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig866contigE_fasciculatus_S2_contig866:25802..26059 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score123.6
Seed ortholog evalue4.1e-26
Seed eggNOG ortholog2880.D7FIG6
Model size258
KEGG koko:K19870,ko:K21991
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.protein binding, bridging
EggNOG OGsKOG4151@1,KOG4151@2759,KOG4234@1,KOG4234@2759
Cds size240
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842523.204252-CDS-E_fasciculatus_S2_contig866:25801..260411696842523.204252-CDS-E_fasciculatus_S2_contig866:25801..26041Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig866 25802..26041 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842523.2155044-UTR-E_fasciculatus_S2_contig866:26041..260591696842523.2155044-UTR-E_fasciculatus_S2_contig866:26041..26059Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig866 26042..26059 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig866.16773.1prot_E_fasciculatus_S2_contig866.16773.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig866 25802..26041 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig866.16773.1

>prot_E_fasciculatus_S2_contig866.16773.1 ID=prot_E_fasciculatus_S2_contig866.16773.1|Name=mRNA_E_fasciculatus_S2_contig866.16773.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=80bp
MVRRAATEALCNLLPHPKMIDHLKLVDTLKLWAAFAQLGGEDPPTAAAAL
GCLAMAVRDPEVRKSELKRGGLYIVALCLI
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mRNA from alignment at E_fasciculatus_S2_contig866:25802..26059-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig866.16773.1 ID=mRNA_E_fasciculatus_S2_contig866.16773.1|Name=mRNA_E_fasciculatus_S2_contig866.16773.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=258bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig866:25802..26059- (Ectocarpus fasciculatus EfasUO2)
CAGTTCTCCGACCACGAGATGGTTCGGCGAGCCGCAACGGAGGCGTTGTG TAACCTCCTGCCGCACCCCAAGATGATCGACCACCTCAAACTCGTCGACA CGCTCAAGCTCTGGGCGGCGTTCGCTCAGCTGGGCGGGGAGGATCCCCCC ACCGCTGCGGCAGCGCTAGGGTGCCTGGCCATGGCTGTGAGGGATCCCGA GGTGAGAAAGAGCGAGCTAAAAAGAGGAGGATTGTATATTGTTGCACTTT GCCTTATA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig866:25802..26059-

>mRNA_E_fasciculatus_S2_contig866.16773.1 ID=mRNA_E_fasciculatus_S2_contig866.16773.1|Name=mRNA_E_fasciculatus_S2_contig866.16773.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=240bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig866:25802..26059- (Ectocarpus fasciculatus EfasUO2)
ATGGTTCGGCGAGCCGCAACGGAGGCGTTGTGTAACCTCCTGCCGCACCC
CAAGATGATCGACCACCTCAAACTCGTCGACACGCTCAAGCTCTGGGCGG
CGTTCGCTCAGCTGGGCGGGGAGGATCCCCCCACCGCTGCGGCAGCGCTA
GGGTGCCTGGCCATGGCTGTGAGGGATCCCGAGGTGAGAAAGAGCGAGCT
AAAAAGAGGAGGATTGTATATTGTTGCACTTTGCCTTATA
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