mRNA_E_fasciculatus_S2_contig866.16771.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig866.16771.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIG4_ECTSI) HSP 1 Score: 1538 bits (3982), Expect = 0.000e+0 Identity = 941/1189 (79.14%), Postives = 968/1189 (81.41%), Query Frame = 1
Query: 1 STLQILHDMRVLTKMDSPAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---APPSSLPGEDPFAYRHATAQVVPISTGETTGKAVAVGGGGSGGDGSAAIEKFHKAVEAARVAREDALQYSRTPVARDTTRGISRDKKARSAAAEALLREKSPPKEFRMGLGWAVLHVDVVIYTEDKNMAQPRRVPGHMQWSNFWNTYQFFGTGQRAKELAKDDSVMNVALGVTEEVAQVAHPLASWLLKKARMRGIALLAGSLYLSVPHLTNPKEWGVDDDEPEEEEEVNRWHWAKKLWTAEQDMALVLAVKNFLPKPTYPNTKPSGPGRDGYSSSMRQAVQPVADMVGKSAEACWRRYRNIANEQAKYAAHGEALPLPANMRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRKGRRTGLLAIQGPLMMADLGHLQFRASELNESRKKAREEAAIAKAAGFEWVNEENSWEEDGLAGGVLPRPFDKWAWTTEELAALVAVRQLLLVPAARFNPTQALERMQVFRPPTLQKAYRSLMASRQIDIAQAAWAANDYSVQDSVDHEVYKMVGRHGTGMVSRGIVAAGRLHALGVADEWSNPLPTFESKTPSNNIADDPMWLSLKLLCSPPLPDDYAAPQPPAARPASLAVKDIGGNRTMVSNLLESVVSGRARFAVGIPAPRPTALEGGVGVQGDGGXXXXXXXXXX-----------------ATDAAVGAAVPPATRGGKTASDAAIPAAGTPXXXXXXXXXXXXXPS-RPGAXXXXXXXXXXXXXXXXEAAKGTVVGGPAAGGNKKEGGTSGLKESVTTATRYRSARCIDADIMATIDAEVKPGDDGGVSAAPRPAHAVDGGGGRDVHAPEMGWGSAATSEGTAPAEEDGVATSAVVEALKKAGEEGMTLSQLWGAARRATTAAVRGSAATAGESEPGVIGCVLRSSEVLCVCSAKDVRYVHEDSCGLLVVPPGPGAESVSFGASSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPRSSGLALKDGVKRKVLFPWTAFDGEVDLRFLNRIRQGLVAYIRSNPGCLAADIREAELSFLTIGETMLLLRDLVRRKVLCDKIVPDTTTVALAGGWGLSQQQ-SGAWAAGSERASEQHVRMAATTSFSTALNWQGMMAGIEGMAETTACQPMPFR 3501
STLQ LHDMR+LTKMDSPAAP XXXXXXXXXXXXXXXXXXXXXXXXXXXXX APPSSLPGEDPFAYRHATAQVVPIST ETTGKAVAV GGG DGSAAI+KFHKAVEAARVAR+DALQYSRTPVARDTTRGISRDKKARSAAAEALLREKSPPKEFRMGLGWAVLHVDVVIYTEDK+MAQPRRVPGHMQWSNFWNTYQFFGTGQRAKELAK DSVMNVALGVTEEVAQVAHPLASWLLKKAR VPHLTNPKEWGVDDDEPEEEEEVNRWHWAKKLWTAEQDMAL+LAVKNFLPKPTYPN+KPSGPGRDGYSSSMRQAVQPVADMVGKSAEACWRRYRNIANEQAKYAAHGEALPLPANMR XXXXXXXXXXXXXXXXX GRRTGLLAIQGPLMMADLGHLQFRASELNESRKKAREEAA+AKAAGFEWVNEENSWEEDG AGGVLPRPFDKWAWTTEEL ALVAVRQLLLVPAARFNP QALERM+VFRPPTLQKAYRSLMASRQIDIAQAAWAANDYSVQDSVDHEVYKMVGRHG GMVSRGIVAAGRLHALG+ADEWS+PLPTFES+TPSNNI D+PMWL LKLLCSPP PDDY PQPPAARPASLAVKD+GGNRTMVSNLLESVVSGRA FAVGIPA RPTALE GV V G G XXXXXXXXXX ATDAA G AVPPATR GKTASDAA PA XXXXXXXXXXXXX R GA EAA+GTVV GPAAGGNKK+ SGL+ESVTTATRYRSARCIDADIMAT+DAEVKP DDG VSA P PAHAV+GG GRDV+APEMGWGS ATSEG P E+DGVATSAVVEALKKAG+EGMTLSQLWGAARRA A V D + E+ G XXXXXXXXXXXXXXXAP S GLALKDGVKRKVLFPWT FDGEVDLRFLNR+RQGLVAY+RSNPGCLAADIREAE+SFLTIGETMLLLRDLVRRKVL D VPDTT VALAGGWGLSQQQ SGAWAAGSERASEQHVRMAATTSFSTAL WQGMMA I+GMAETTACQPMP R
Sbjct: 723 STLQTLHDMRILTKMDSPAAPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPPSSLPGEDPFAYRHATAQVVPISTDETTGKAVAVSGGG---DGSAAIDKFHKAVEAARVARQDALQYSRTPVARDTTRGISRDKKARSAAAEALLREKSPPKEFRMGLGWAVLHVDVVIYTEDKSMAQPRRVPGHMQWSNFWNTYQFFGTGQRAKELAKHDSVMNVALGVTEEVAQVAHPLASWLLKKAR--------------VPHLTNPKEWGVDDDEPEEEEEVNRWHWAKKLWTAEQDMALILAVKNFLPKPTYPNSKPSGPGRDGYSSSMRQAVQPVADMVGKSAEACWRRYRNIANEQAKYAAHGEALPLPANMRTRNKKRSLDNEDDGGXXXXXXXXXXXXXXXXXXXXGRRTGLLAIQGPLMMADLGHLQFRASELNESRKKAREEAALAKAAGFEWVNEENSWEEDGRAGGVLPRPFDKWAWTTEELEALVAVRQLLLVPAARFNPAQALERMRVFRPPTLQKAYRSLMASRQIDIAQAAWAANDYSVQDSVDHEVYKMVGRHGKGMVSRGIVAAGRLHALGIADEWSSPLPTFESRTPSNNIIDNPMWLPLKLLCSPPRPDDYTTPQPPAARPASLAVKDVGGNRTMVSNLLESVVSGRASFAVGIPASRPTALEVGVSVDGMGXXXXXXXXXXXXXXXXXXXXXXXXXXXXATDAAAGTAVPPATRVGKTASDAAAPAXXXXXXXXXXXXXXXXXXXPRLGAETAVTGGHPAKPGVGNEAAQGTVVAGPAAGGNKKDSAASGLQESVTTATRYRSARCIDADIMATVDAEVKPRDDGCVSAEPWPAHAVEGGSGRDVYAPEMGWGSTATSEGATPTEDDGVATSAVVEALKKAGKEGMTLSQLWGAARRAKAATV-------------------------------DADSMDEEEASESATTKG-------------------------------------------WKGXXXXXXXXXXXXXXXAPSSPGLALKDGVKRKVLFPWTTFDGEVDLRFLNRVRQGLVAYVRSNPGCLAADIREAEVSFLTIGETMLLLRDLVRRKVLRDHFVPDTTAVALAGGWGLSQQQQSGAWAAGSERASEQHVRMAATTSFSTALGWQGMMARIKGMAETTACQPMPCR 1820
BLAST of mRNA_E_fasciculatus_S2_contig866.16771.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZA5_9PHAE) HSP 1 Score: 1347 bits (3485), Expect = 0.000e+0 Identity = 885/1228 (72.07%), Postives = 911/1228 (74.19%), Query Frame = 1
Query: 1 STLQILHDMRVLTKMDSPAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--APPSSLPGEDPFAYRHATAQVVPISTGETTGKAVAVGGGGSGGDGSAAIEKFHKAVEAARVAREDALQYSRTPVARDTTRGISRDKKARSAAAEALLREKSPPKEFRMGLGWAVLHVDVVIYTEDKNMAQPRRVPGHMQWSNFWNTYQFFGTGQRAKELAKDDSVMNVALGVTEEVAQVAHPLASWLLKKARMRGIALLAGSLYLSVPHLTNPKEWGVDDDEPEEEEEVNRWHWAKKLWTAEQDMALVLAVKNFLPKPTYPNTKPSGPGRDGYSSSMRQAVQPVADMVGKSAEACWRRYRNIANEQAKYAAHGEALPLPANMRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRKGRRTGLLAIQGPLMMADLGHLQFRASELNESRKKAREEAAIAKAAGFEWVNEENSWEEDGLAGGVLPRPFDKWAWTTEELAALVAVRQLLLVPAARFNPTQALERMQVFRPPTLQKAYRSLMASRQIDIAQAAWAANDYSVQDSVDHEVYKMVGRHGTGMVSRGIVAAGRLHALGVAD-----EWSNPLPTFESKTPSNNIADDPMWLSLKLLC-------------------------SPPLPDDYAAPQPPAARPASLAVKDIGGNRTMVSNLLESVVSGRARFAVGIPAPRPTALEGGVGVQGDG---------------GXXXXXXXXXXATDAAVGAAVPPATRGGKTASDAAIPAAGTPXXXXXXXXXXXXXPSRPGAXXXXXXXXXXXXXXXXEAAKGTVVG-----GPAAGGNKKEGGTSGLKESVTTATRYRSARCIDADIMATIDAEVKPGDDGGVSAAPRPAHAVDGGGGRDVHAPEMGWGSAATSEGTAPAEEDGVATSAVVEALKKAGEEGMTLSQLWGAARRATTAAVRGSAATAGESEP--------GVIGCVLRSSEVLCVCSAKDVRYVHEDSCGLLVVPPGPGAESVSFGASSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPRSSGLALKDGVKRKVLFPWTAFDGEVDLRFLNRIRQGLVAYIRSNPGCLAADIREAELSFLTIGETMLLLRDLVRRKVLCDKIVPDTTTVALAGGWGLSQQQ-SGAWAAGSERASEQHVRMAATTSFSTALNWQGMMAGIEGMAETTACQPMPFR 3501
STLQILHDMR+LTKMDSPAAP XXXXXXXXXXXXXXXXXXXXXXXXXXXXX APPSSLPGEDPFAYRHATAQVVPIST ETTGKAVAV GGG DGSAAI+KFHKAVEAARVAR+DALQYSRTP ARDTTRGISRDKKARSAAAEALLRE SPPKEFRMGLGWAVLHVDVVIYTEDKNMAQPRRVPGHMQWSNFWNTYQ VP+LTNPKEWGVDDDEPE E DMAL+LAVKN+LPKPTYPNTKPSGPGRDGYSSSMRQAVQPVADMVGKSAEACWRRYRNIANEQAKYAAHGEALPLPANMR XXXXXXXXX +RKGRRTGLLAIQGPLMMA KKAREEAA+AKAAGFEWVNEENSWEEDG AGGVLPRPFDKWAWTTEEL ALVAVRQLLLV AARFNP KAYRSLMASRQIDIAQAAWAANDYSVQDSVDHEVYKMVGRHG GMVSRGIVAAGRLHALG+A EWS+PLPTFES+TPSNNI D+PMWL LKLLC SPP PDDY APQPPAARPASLAVKDIGGNRTMVSNLLESVVSGRA FAVGIPA RPT LE GV + G G XXXXXXXXXX TDAA GAAVPPAT GKTA XXXXXXXXXXXXX XXXXXXXXXXXXXXXX GPAAGGNKK+ G SGL+ESV TATRYRSARCIDADIMAT+DAEV+P DDGGVSA P PAHA++GG GRDV PEMGWGS ATSEG APAE+DGVATSAVVEALKKAG+EGMTLSQLWGAARRA T VR +AAT GESE GVIGCVLRSS VLCVC A DVRYVHEDSCGLL +PPGP AES SFG SS+ XXXXXXXXXXXXXXX AP S GLALKDGVKRKVLFPWT FDGEVDLRFLNR+RQGLVAY+RSNPGCLAA IREAELSFLTIGETMLLLRDLVRRKVL D VPDTT VALAGGWGLSQQQ S AWAAGSERASEQHVRMAATTSFSTAL WQGMMA IEGMAETTACQ MP R
Sbjct: 771 STLQILHDMRILTKMDSPAAPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAPPSSLPGEDPFAYRHATAQVVPISTDETTGKAVAVSGGG---DGSAAIDKFHKAVEAARVARQDALQYSRTPGARDTTRGISRDKKARSAAAEALLRENSPPKEFRMGLGWAVLHVDVVIYTEDKNMAQPRRVPGHMQWSNFWNTYQ----------------------------------------------------------VPYLTNPKEWGVDDDEPEXXXE---------------DMALILAVKNYLPKPTYPNTKPSGPGRDGYSSSMRQAVQPVADMVGKSAEACWRRYRNIANEQAKYAAHGEALPLPANMRTRNKKRPHDNEDDGXXXXXXXXXKSGSGKKENKRKGRRTGLLAIQGPLMMA----------------KKAREEAALAKAAGFEWVNEENSWEEDGCAGGVLPRPFDKWAWTTEELEALVAVRQLLLVSAARFNP----------------KAYRSLMASRQIDIAQAAWAANDYSVQDSVDHEVYKMVGRHGKGMVSRGIVAAGRLHALGIAGDNTEHEWSSPLPTFESRTPSNNIIDNPMWLPLKLLCRFVSLSLPASPYLDAKIQPRLPPARSPPRPDDYTAPQPPAARPASLAVKDIGGNRTMVSNLLESVVSGRASFAVGIPASRPTTLELGVSIDGMGMGDGVRDVGGXXXXXXXXXXXXXXXXXTDAAAGAAVPPATSLGKTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPAAGGNKKDSGASGLQESVATATRYRSARCIDADIMATVDAEVRPRDDGGVSAEPWPAHAMEGGSGRDVFPPEMGWGSTATSEGAAPAEDDGVATSAVVEALKKAGKEGMTLSQLWGAARRAKTVTVRSTAATTGESERQQQWRRLRGVIGCVLRSSGVLCVCGAGDVRYVHEDSCGLLAIPPGPTAESGSFGTSSAPVTAPATPMEVEADSMDEEEASDSATRKGWKGXXXXXXXXXXXXXXX-APSSPGLALKDGVKRKVLFPWTTFDGEVDLRFLNRVRQGLVAYVRSNPGCLAAGIREAELSFLTIGETMLLLRDLVRRKVLRDHFVPDTTAVALAGGWGLSQQQQSSAWAAGSERASEQHVRMAATTSFSTALGWQGMMARIEGMAETTACQLMPCR 1889 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig866.16771.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig866.16771.1 >prot_E_fasciculatus_S2_contig866.16771.1 ID=prot_E_fasciculatus_S2_contig866.16771.1|Name=mRNA_E_fasciculatus_S2_contig866.16771.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=1160bp MRVLTKMDSPAAPPSSSTPGGGVSTATARSSGSAGNSSSTEEGAPPSSLPback to top mRNA from alignment at E_fasciculatus_S2_contig866:139..15172+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig866.16771.1 ID=mRNA_E_fasciculatus_S2_contig866.16771.1|Name=mRNA_E_fasciculatus_S2_contig866.16771.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=15034bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig866:139..15172+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig866:139..15172+ >mRNA_E_fasciculatus_S2_contig866.16771.1 ID=mRNA_E_fasciculatus_S2_contig866.16771.1|Name=mRNA_E_fasciculatus_S2_contig866.16771.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=3480bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig866:139..15172+ (Ectocarpus fasciculatus EfasUO2)back to top |