mRNA_E_fasciculatus_S2_contig8656.16769.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8656.16769.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW24_9PHAE) HSP 1 Score: 419 bits (1078), Expect = 3.930e-130 Identity = 258/314 (82.17%), Postives = 259/314 (82.48%), Query Frame = 1
Query: 4 SVREALSDMLAVAAGFLPPWVDALLSGFPFLLPLDLRLRYFRSLAFGVTRSVAYLQQESSAGDGSGXXXXXXXXXXXXXXXX-----------------------------LGALRRDIVQVSRSQLLQHAEQVMSMYTPSKAVLEFRFAGEKGLGAGVTASFYSAVAAELQRRSVNTKLPMWVDNDSTGDPQNFLAPTSGLFPAPLPVLAGGEXXXXXXXXXXXXXXXXXXXXANGKALAQQRRSVIGRFRFLGRLAARCLMDGQVLPLSLSVDFLRLVLAVVDDHARSQGQVNTA-AAATAVAAAGCVGAGP 855
SVREALSDMLAVAAGFLPPWVDALLSGFPFLLPLDLRLRYFRSLAFGVTRSVAYLQQESSAGDGSGXXXXXXXXXXXXXXXX LGALRRDIVQVSRSQLLQHAEQVMSMYTPSKAVLEFRFAGEKGLGAGVTASFYSAVAAELQRRSVNTKLPMWVDNDSTGDPQ+FLAPTSGLFPAPLPVLAGGE A GKALAQQRRSVIGRFRFLGRLAARCLMDGQVLPLSLSVDFLRLVLAVVDDHARSQGQV T AAATA AAGCVGAGP
Sbjct: 2904 SVREALSDMLAVAAGFLPPWVDALLSGFPFLLPLDLRLRYFRSLAFGVTRSVAYLQQESSAGDGSGXXXXXXXXXXXXXXXXXXXXXRRTXXXXXXXXXXXXXXXXXXAGGLGALRRDIVQVSRSQLLQHAEQVMSMYTPSKAVLEFRFAGEKGLGAGVTASFYSAVAAELQRRSVNTKLPMWVDNDSTGDPQSFLAPTSGLFPAPLPVLAGGEETGSDGGGAGSSTCVGGG--AKGKALAQQRRSVIGRFRFLGRLAARCLMDGQVLPLSLSVDFLRLVLAVVDDHARSQGQVKTTTAAATAFTAAGCVGAGP 3215
BLAST of mRNA_E_fasciculatus_S2_contig8656.16769.1 vs.
Match: HECT (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBS8_ECTSI) HSP 1 Score: 235 bits (600), Expect = 4.330e-66 Identity = 137/195 (70.26%), Postives = 139/195 (71.28%), Query Frame = 1
Query: 271 IVQVSRSQLLQHAEQVMSMYTPSKAVLEFRFAGEKGLGAGVTASFYSAVAAELQRRSVNTKLPMWVDNDSTGDPQNFLAPTSGLFPAPLPVLAGGEXXXXXXXXXXXXXXXXXXXXANGKALAQQRRSVIGRFRFLGRLAARCLMDGQVLPLSLSVDFLRLVLAVVDDHARSQGQVNTAAAATAVAAAGCVGAGP 855
+ VSRSQLLQHAEQVMSMYTPSKAVLEFRFAGEKGLGAGVTASFYSAVAAELQRRSVNTKLPMWVDNDSTGDPQ+FLAP SGLFPAPLPVLAGGE A GKALAQQRRSVIGRFRFLGRLAARCLMDGQ T AAATA AAGCVGAGP
Sbjct: 1423 LADVSRSQLLQHAEQVMSMYTPSKAVLEFRFAGEKGLGAGVTASFYSAVAAELQRRSVNTKLPMWVDNDSTGDPQSFLAPASGLFPAPLPVLAGGEETGSDGGGAGSSACVGGG--AKGKALAQQRRSVIGRFRFLGRLAARCLMDGQT----------------------------TTAAATAFTAAGCVGAGP 1587
BLAST of mRNA_E_fasciculatus_S2_contig8656.16769.1 vs.
Match: HECT (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNJ7_9STRA) HSP 1 Score: 193 bits (491), Expect = 5.880e-53 Identity = 123/275 (44.73%), Postives = 160/275 (58.18%), Query Frame = 1
Query: 13 EALSDMLAVAAGFLPPWVDALL-SGFPFLLPLDLRLRYFRSLAFGVTRSVAYLQQESSAGDGSGXXXXXXXXXXXXXXXXLGALRRDIVQVSRSQLLQHAEQVMSMYTPSKA---VLEFRFAGEKGLGAGVTASFYSAVAAELQRRSVNTKLPMWVDNDSTGDPQNFLAPTSGLFPAPLPVLAGGEXXXXXXXXXXXXXXXXXXXXANGKALAQQRRSVIGRFRFLGRLAARCLMDGQVLPLSLSVDFLRLVLAVVDDHARSQGQVNTAAAATAV 825
+A++D LAVAA LPPW++A++ G+ FLLPL LR R+F+S +FGV RS+A+LQ +++A LRRD+VQVSR LL+HA+Q+M YT + VLEFRF GE+GLGAGVTASFYSAVAA + R KLP+WVD+DS + +GLFP PL G+ +R +V+ +F+FLGRLAARCL+D QVLPL LS+DF+RLVLAV +A A TAV
Sbjct: 126 QAMADELAVAANALPPWLEAIVCGGYGFLLPLGLRRRFFQSCSFGVNRSIAWLQTQAAAAAAGASGGQPSGGRL---------LRRDVVQVSRDHLLEHAQQIMLAYTTPTSLASVLEFRFQGERGLGAGVTASFYSAVAAAMHARGALGKLPLWVDSDSLAPVGEPITHPNGLFPMPL-----------------------------GRG-HPRRGAVLAQFKFLGRLAARCLIDSQVLPLPLSLDFMRLVLAVSGGXXXXXXXXXSATAVTAV 361
BLAST of mRNA_E_fasciculatus_S2_contig8656.16769.1 vs.
Match: Uncharacterized (protein n=3 Tax=Micromonas TaxID=38832 RepID=C1E3P6_MICCC) HSP 1 Score: 142 bits (359), Expect = 5.480e-34 Identity = 93/253 (36.76%), Postives = 128/253 (50.59%), Query Frame = 1
Query: 1 QSVREALSDMLAVAAGFLPPWVDALLSGFPFLLPLDLRLRYFRSLAFGVTRSVAYLQQESSAGDGSGXXXXXXXXXXXXXXXXLGALRRDIVQVSRSQLLQHAEQVMSMYTPSKAVLEFRFAGEKGLGAGVTASFYSAVAAELQRRSVNTKLPMWVDNDSTGDPQNFLAPTSGLFPAPLPVLAGGEXXXXXXXXXXXXXXXXXXXXANGKALAQQRRSVIGRFRFLGRLAARCLMDGQVLPLSLSVDFLRLVL 759
Q ++ L D +AVA+G +P W LL G FL PL+ RLR+F S AFG +RSV ++Q+ + AG G G LG L+R+ V V R ++L A+ +M + K+VLE F E+G G VT FY+ VA LQ RS NT MWV ++ D L T GLFP PLP + LA++ RFRF+GRL + L+DG +LPL L+ F+R+ +
Sbjct: 2248 QKLQAQLEDAVAVASGAVPAWTHTLLRGAWFLFPLEARLRHFHSTAFGTSRSVTWVQEHAGAGGGVGGGDGDPARPRGGARR-LGTLKRERVTVRRDRVLADADVLMRHHARHKSVLEVLFTDEEGFGGAVTKEFYNKVADALQLRSENTATMMWVPDEDGDDGPEHLWQTRGLFPHPLP------------------------PRSPESELARR------RFRFIGRLVGKALLDGHILPLPLNPAFVRVAI 2469
BLAST of mRNA_E_fasciculatus_S2_contig8656.16769.1 vs.
Match: HECT (domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CT83_EMIHU) HSP 1 Score: 133 bits (335), Expect = 6.450e-31 Identity = 93/276 (33.70%), Postives = 130/276 (47.10%), Query Frame = 1
Query: 7 VREALSDMLAVAAGFLPPWVDALLSGFPFLLPLDLRLRYFRSLAFGVTRSVAYLQQE--------------------------SSAGDGSGXXXXXXXXXXXXXXXXLGALRRDIVQVSRSQLLQHAEQVMSMYTPSKAVLEFRFAGEKGLGAGVTASFYSAVAAELQRRSVNTKLPMWVDNDSTGDPQNFLAPTSGLFPAPLPVLAGGEXXXXXXXXXXXXXXXXXXXXANGKALAQQRRSVIGRFRFLGRLAARCLMDGQVLPLSLSVDFLRLV 756
+++ L D LAV AG LP W + LL P L R RYF + +FGV+R++ + Q++ S A + +GALR DI +VSR LL AE++M ++ + LE +F GE G G+GVT +FYSAVA EL + +LP+W+ + DP+ F++ LFP PLP +A R +V GRFRFLGRLAA+ D ++PL LS+DFL LV
Sbjct: 402 LQQQLGDALAVTAGALPGWCEVLLRRCPDLFSPGSRARYFHATSFGVSRALHWSQEQGVAAVRAAYAEELAALDRARLEAEVSSDAQALAEVVEQVAEVEDRIGRDRMGALRSDIARVSRDALLPSAERLMGLHAGCASALEVQFEGESGFGSGVTQNFYSAVANELLKAKHQAELPLWLAEHAGIDPEGFISHPGSLFPRPLPP----------------------------EAPPAVREAVRGRFRFLGRLAAKACRDDFIVPLPLSLDFLHLV 649
BLAST of mRNA_E_fasciculatus_S2_contig8656.16769.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FNU8_PYTOL) HSP 1 Score: 124 bits (312), Expect = 8.530e-28 Identity = 88/263 (33.46%), Postives = 129/263 (49.05%), Query Frame = 1
Query: 19 LSDMLAVAAGFLPPWVDALLSGFPFLLPLDLRLRYFRSLAFGVTRSVAYLQQE-----SSAGDGSGXXXXXXXXXXXXXXXXLGALRRDIVQVSRSQLLQHAEQVMSMYTPSKAVLEFRFAGEKGLGAGVTASFYSAVAAELQ----RRSVNTKLPMWV---DNDSTGDPQNF----LAPTSGLFPAPLPVLAGGEXXXXXXXXXXXXXXXXXXXXANGKALAQQRRSVIGRFRFLGRLAARCLMDGQVLPLSLSVDFLRLVL 759
LSD+L+V +G P W D++ S F P +LR + F + AFG TRS+ + + E +++G S + + ++ V+V+R LL AE VM M+ KA+L+ F GEKG G+GVTA+FYSA A LQ R+V T+L W+ +ND +P + +GLFP P + G +I RFR +GRLA + LMDG++LPL LS F++LV+
Sbjct: 2085 LSDVLSVCSGIYPEWCDSMASNCRFFFPRELREKLFHATAFGSTRSLHWFRNELNVEDNASGGASAGGEGIAGDGIYNHEITISPIPKERVKVNRESLLSSAEAVMKMHGKRKAILDIVFVGEKGYGSGVTAAFYSATAQALQSVAENRNVETRL--WIPGIENDLPSEPTEMNNEVIRHPNGLFPFPHQKASAG---------------------------------LIERFRMMGRLAGKALMDGRLLPLPLSQQFMKLVI 2312
BLAST of mRNA_E_fasciculatus_S2_contig8656.16769.1 vs.
Match: HECT-type (E3 ubiquitin transferase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X270_GLOUD) HSP 1 Score: 122 bits (307), Expect = 3.910e-27 Identity = 84/263 (31.94%), Postives = 125/263 (47.53%), Query Frame = 1
Query: 19 LSDMLAVAAGFLPPWVDALLSGFPFLLPLDLRLRYFRSLAFGVTRSVAYLQQE---------SSAGDGSGXXXXXXXXXXXXXXXXLGALRRDIVQVSRSQLLQHAEQVMSMYTPSKAVLEFRFAGEKGLGAGVTASFYSAVAAELQRRSVNTK--LPMWVDNDSTG-----DPQNFLAPTSGLFPAPLPVLAGGEXXXXXXXXXXXXXXXXXXXXANGKALAQQRRSVIGRFRFLGRLAARCLMDGQVLPLSLSVDFLRLVL 759
L D+L+V +G P W D L++ F P +LR + FRS +FG TRS+ + + + S+GDG + + ++ V+V R+ +LQ AE VM M+ KA+L+ F GEKG G+GVTA+FYSA A LQ N K L W++ D + D + + +GLFP P + ++ RFR +GRLA + LMD ++LPL LS F++LV+
Sbjct: 2359 LQDVLSVCSGIYPTWCDRLVTQCRFFFPRELREKLFRSTSFGCTRSLHWFRNQLQVEESNVSGSSGDGGNLGGSNGGGGIYNQEITITPIPKERVKVHRANILQSAEAVMKMHGKRKAILDIVFVGEKGYGSGVTAAFYSATAQALQSIEENKKKHLRCWIEGDESSGHDDDDSDDVIRHPNGLFPFPH---------------------------------VKPHVKLLERFRMMGRLAGKALMDERILPLPLSTHFMKLVV 2588
BLAST of mRNA_E_fasciculatus_S2_contig8656.16769.1 vs.
Match: HECT-type (E3 ubiquitin transferase n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VEQ4_9STRA) HSP 1 Score: 120 bits (302), Expect = 1.770e-26 Identity = 89/270 (32.96%), Postives = 127/270 (47.04%), Query Frame = 1
Query: 7 VREALSDMLAVAAGFLPPWVDALLSGFPFLLPLDLRLRYFRSLAFGVTRSVAYLQQ-----ESSAGDGSGXXXXXXXXXXXXXXXXLGALRRDIVQVSRSQLLQHAEQVMSMYTPSKAVLEFRFAGEKGLGAGVTASFYSAVAAELQRRSVNTKLPMWVDN-----------DSTGDPQN---FLAPTSGLFPAPLPVLAGGEXXXXXXXXXXXXXXXXXXXXANGKALAQQRRSVIGRFRFLGRLAARCLMDGQVLPLSLSVDFLRLVL 759
+ + D+L++ +G PPW D L++ F P DLR R FRS +FG TRS+ + + ESSA SG + + ++ V+V R +LQ AE VM M+ KAVL+ F GEKG G GVTA+FYS +A LQ + N K WV D+ GD + + ++GLFP P + R ++ RFR +GRLA + LMD ++LPL LS F++LV+
Sbjct: 2247 LERQMQDVLSMCSGIYPPWCDELVTHCKFFFPRDLRERLFRSTSFGCTRSLHWFRNQLNIDESSAD--SGVSSMVVGGGIYNQEISISPVPKERVKVYRENILQSAEAVMKMHAKRKAVLDVVFVGEKGYGTGVTAAFYSTIAHALQMITENQKNKFWVPGEDDEAETVHRVDAVGDIADDTPVIRHSNGLFPYPHRTPS---------------------------------RKLVERFRTMGRLAGKALMDERLLPLPLSPQFMKLVV 2481
BLAST of mRNA_E_fasciculatus_S2_contig8656.16769.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XR97_9STRA) HSP 1 Score: 117 bits (293), Expect = 2.690e-25 Identity = 94/276 (34.06%), Postives = 136/276 (49.28%), Query Frame = 1
Query: 7 VREALSDMLAVAAGFLPPWVDALLSGFPFLLPLDLRLRYFRSLAFGVTRSVAYLQ---QESSAGDGSGXXXXXXXXXXXXXXXXLGALRRDIVQVSRSQLLQHAEQVMSMYTPSKAVLEFRFAGEKGLGAGVTASFYSAVAAELQRRSVNTKLPMWVD-------------------NDSTGDP---QNFLAPTSGLFPAPLPVLAGGEXXXXXXXXXXXXXXXXXXXXANGKALAQQRRSVIGRFRFLGRLAARCLMDGQVLPLSLSVDFLRLVL 759
+ E L D+L+V +G P W D +++ F P +LR R FR+ AFG TRS+ + + Q GD +G XXXXXX + + ++ V+V R+ +L AE VM M+ +A+L+ FAGEKG G+GVTA+FYSA A LQ N + +WV +DS GD + + +GLFP P + A A+ V+ RFR +GRLA + LMD ++LPL LS F++LV+
Sbjct: 2368 LEEQLQDVLSVCSGIYPAWCDRMVTQCRFFFPRELRERLFRATAFGCTRSLHWFRSQLQVEEGGDSAGLGXXXXXXILNQEIS-ITPIPKERVKVQRANILGSAEAVMKMHAKRRAILDIVFAGEKGYGSGVTAAFYSATALALQTVDENRRHRLWVSGDESERASSVCGQKTTLATDDSNGDATDDDDVIRHPNGLFPFP-----------------------------HASAPAK----VVERFRMMGRLAGKALMDERLLPLPLSPHFMQLVV 2609
BLAST of mRNA_E_fasciculatus_S2_contig8656.16769.1 vs.
Match: HECT (E3 ubiquitin ligase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WKM9_9STRA) HSP 1 Score: 116 bits (290), Expect = 6.270e-25 Identity = 84/269 (31.23%), Postives = 122/269 (45.35%), Query Frame = 1
Query: 19 LSDMLAVAAGFLPPWVDALLSGFPFLLPLDLRLRYFRSLAFGVTRSVAYLQQESSAGDGSGXXXXXXXXXXXXXXXX-LGALRRDIVQVSRSQLLQHAEQVMSMYTPSKAVLEFRFAGEKGLGAGVTASFYSAVAAELQRRSVNTKLPMWVDN-----------------DSTGDPQNFLAPTSGLFP----APLPVLAGGEXXXXXXXXXXXXXXXXXXXXANGKALAQQRRSVIGRFRFLGRLAARCLMDGQVLPLSLSVDFLRLVL 759
+ D+L++ +G PPW DAL++ F P +LR + FRS +FG TRS+ + + + + + S + + ++ V+V R +LQ AE VM M+ KA+L+ F GEKG G+GVTA+FYS A LQ S N K W+ D D + ++GLFP +P P L I RFR +GRLA + LMD ++LPL LS FL+LV+
Sbjct: 1313 MQDVLSMCSGIYPPWCDALVTHCKFFFPHELRKKLFRSTSFGCTRSLHWFRNQLNIEESSSDSMSSMVGGGIYNQEISISPIPKERVKVHRGNILQSAEAVMKMHAKRKAILDVVFVGEKGYGSGVTAAFYSTTAHALQVISENEKNRYWIPGEDDEAAAKTNGDEVELGDDIADDAPVIRHSNGLFPYPHRSPTPKL-------------------------------------IERFRMMGRLAGKALMDERLLPLPLSTQFLKLVV 1544 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8656.16769.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8656.16769.1 >prot_E_fasciculatus_S2_contig8656.16769.1 ID=prot_E_fasciculatus_S2_contig8656.16769.1|Name=mRNA_E_fasciculatus_S2_contig8656.16769.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=321bp MLAVAAGFLPPWVDALLSGFPFLLPLDLRLRYFRSLAFGVTRSVAYLQQEback to top mRNA from alignment at E_fasciculatus_S2_contig8656:3808..6417- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig8656.16769.1 ID=mRNA_E_fasciculatus_S2_contig8656.16769.1|Name=mRNA_E_fasciculatus_S2_contig8656.16769.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2610bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8656:3808..6417- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8656:3808..6417- >mRNA_E_fasciculatus_S2_contig8656.16769.1 ID=mRNA_E_fasciculatus_S2_contig8656.16769.1|Name=mRNA_E_fasciculatus_S2_contig8656.16769.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=963bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8656:3808..6417- (Ectocarpus fasciculatus EfasUO2)back to top |