mRNA_E_fasciculatus_S2_contig8643.16759.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8643.16759.1
Unique NamemRNA_E_fasciculatus_S2_contig8643.16759.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8643.16759.1 vs.
Match: Transmembrane (protein 138 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC34_ECTSI)

HSP 1 Score: 341 bits (875), Expect = 4.660e-118
Identity = 172/188 (91.49%), Postives = 177/188 (94.15%), Query Frame = 1 
Query:    1 ASLVRGGDSLLFRVKLFIMVFLTVVDMALNSSVEHETFGTWDETGRDGTALVLILGFQLVVQVGNFACLFLMMFETYPFRVGLMGMLTSQYLTVYVINVLYFVTTACVYGYRVASMVQGEEGMGIWQVWDLRGYLPLSIFHKIGECRR*RLAPPAVPPAEQPVVSLSGDDHLNLALSTSQAAMRTPEA 564
            AS+  GGDS+LFRVKLFIMVFLTVVDM LNSSVEHETFGTWD TGRDGTALVLILGFQLVVQVGNFACLFLMMFETYPFRVGLMGMLTSQYLTVYVINVLYFVTTACVYGYRVA+MVQGEEGMGIWQVWDLRGYLPLSIFHKIGECRR  LAPPAVPPAEQPVVSL GD+HLNLA STSQA M+T  A
Sbjct:    8 ASVTTGGDSILFRVKLFIMVFLTVVDMTLNSSVEHETFGTWDGTGRDGTALVLILGFQLVVQVGNFACLFLMMFETYPFRVGLMGMLTSQYLTVYVINVLYFVTTACVYGYRVAAMVQGEEGMGIWQVWDLRGYLPLSIFHKIGECRRRHLAPPAVPPAEQPVVSLCGDEHLNLAPSTSQAVMKTRAA 195
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BLAST of mRNA_E_fasciculatus_S2_contig8643.16759.1 vs.
Match: Transmembrane (protein 138 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIR8_9PHAE)

HSP 1 Score: 276 bits (706), Expect = 2.430e-92
Identity = 135/145 (93.10%), Postives = 140/145 (96.55%), Query Frame = 1 
Query:    1 ASLVRGGDSLLFRVKLFIMVFLTVVDMALNSSVEHETFGTWDETGRDGTALVLILGFQLVVQVGNFACLFLMMFETYPFRVGLMGMLTSQYLTVYVINVLYFVTTACVYGYRVASMVQGEEGMGIWQVWDLRGYLPLSIFHKIGE 435
            AS+  GGD +LFRVKLFIMVFLTVVDM LNSSVEHETFGTWD TGRDGTALVLILGFQLVVQVGNFACLFLMMFETYPFRVGLMGMLTSQYLTVY+INVLYFVTTACVYGYRVA+MVQGEEGMGIWQVWDLRGYLPLSIFHKIG+
Sbjct:    8 ASVTTGGDCILFRVKLFIMVFLTVVDMTLNSSVEHETFGTWDGTGRDGTALVLILGFQLVVQVGNFACLFLMMFETYPFRVGLMGMLTSQYLTVYIINVLYFVTTACVYGYRVAAMVQGEEGMGIWQVWDLRGYLPLSIFHKIGD 152
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BLAST of mRNA_E_fasciculatus_S2_contig8643.16759.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBT6_9STRA)

HSP 1 Score: 107 bits (267), Expect = 1.340e-23
Identity = 60/155 (38.71%), Postives = 86/155 (55.48%), Query Frame = 1 
Query:   13 RGGDSLLFRVKLFIMVFLTVVDMALNSSVEHETFG--TWDETGRD-GTALVLILGFQLVVQVGNFACLFLMMFETYPFRVGLMGMLTSQYLTVYVINVLYFVTTACVYGYRVASMVQGEEGMGI-----------WQVWDLRGYLPLSIFHKIGE 435
            +GG    F+ KL +++ L + D+ LN SVE++++   T D  G D  T LVL+ G QL+VQV     LF+MMF+T+PF+ GLMG++   Y  VY +N  Y   TA +YGYR+A ++    G              W  WD   Y+  SI HK+ E
Sbjct: 1287 KGGADAWFQAKLTVLMLLMLADVLLNGSVEYDSYSQLTLDGGGDDVDTILVLVHGVQLLVQVAVLLTLFIMMFDTWPFKAGLMGLVAVHYKWVYAVNGAYITATALLYGYRLAKLIGTSGGXXXXXXXXXXXXXAWDPWDSGAYMAFSIMHKLDE 1441
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BLAST of mRNA_E_fasciculatus_S2_contig8643.16759.1 vs.
Match: Transmembrane (protein 138 n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TSS8_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 5.360e-16
Identity = 47/133 (35.34%), Postives = 76/133 (57.14%), Query Frame = 1 
Query:   31 LFRVKLFIMVFLTVVDMALNSSVEHETFGTWDETGRDGTALVLILGFQLVVQVGNFACLFLMMFETYPFRVGLMGMLTSQYLTVYVINVLYFVTTACVYGYRVASMVQGEEGMGIWQVWDLRGYLPLSIFHKI 429
            ++ V + IMV   V D+ALNSSVEH+T+   ++    G A +++ G  +V+QV  F  L LMM ETY F+VGL+ +L SQ+  V +I+ +Y + T  +   R + +V       +  +W  + Y   S+ HK+
Sbjct:    8 MWAVTMGIMVLFLVADLALNSSVEHDTYVAVEQQHLAGGAYIMVYGCHVVLQVSTFIVLVLMMGETYLFQVGLLQILASQFPAVLIIHPVYMLYTIVLGAVRTSRLVGNSH---VTDLWADQAYAAFSVGHKM 137
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BLAST of mRNA_E_fasciculatus_S2_contig8643.16759.1 vs.
Match: Transmembrane (protein 138 n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E2F6_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.320e-6
Identity = 42/139 (30.22%), Postives = 70/139 (50.36%), Query Frame = 1 
Query:   43 KLFIMVFLTVVDMALNSSVEHETFGTWDETGRDGTALVLILGFQLVVQVGNFACLFLMMFETYPFRVGLMGMLTSQYLTVYVINVLYFVTTACVYGYRV--ASMVQGEEGMG------IWQVWDLRG--YLPLSIFHKI 429
            K  I+  L + D+  NS++E++    WD       +   + G Q+ +++  FA +FLM+ ETYPFRVGL+  L +++ +++ ++ LY   +  V  YR+     V    G G      +W   D  G  Y  LS  HK+
Sbjct:   28 KTIILFGLLLTDLVFNSTLEYDE---WD-------SYPTMFGIQVFIEICTFAVVFLMLCETYPFRVGLLDALLAEFRSIFWVHPLYVCWSLLVGIYRIFLGRQVSKYSGAGFRRLPNMWDTSDPAGETYTYLSHTHKL 156
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8643.16759.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
Transmembrane4.660e-11891.49protein 138 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
Transmembrane2.430e-9293.10protein 138 n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
Uncharacterized1.340e-2338.71protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Transmembrane5.360e-1635.34protein 138 n=1 Tax=Phaeomonas parva TaxID=124430 ... [more]
Transmembrane1.320e-630.22protein 138 n=1 Tax=Pelagomonas calceolata TaxID=3... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8643contigE_fasciculatus_S2_contig8643:508..2045 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score62.4
Seed ortholog evalue1.8e-07
Seed eggNOG ortholog4787.PITG_12212T0
Model size564
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.Transmembrane protein 138
EggNOG OGs2E45E@1,2SB3Q@2759,3QG83@4776
Ec32 ortholog descriptionTransmembrane protein 138
Ec32 orthologEc-20_004270.1
Cds size393
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842521.5485644-UTR-E_fasciculatus_S2_contig8643:507..5611696842521.5485644-UTR-E_fasciculatus_S2_contig8643:507..561Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8643 508..561 +
1696842521.6082795-UTR-E_fasciculatus_S2_contig8643:1928..20451696842521.6082795-UTR-E_fasciculatus_S2_contig8643:1928..2045Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8643 1929..2045 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842521.5621314-CDS-E_fasciculatus_S2_contig8643:561..6741696842521.5621314-CDS-E_fasciculatus_S2_contig8643:561..674Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8643 562..674 +
1696842521.5802424-CDS-E_fasciculatus_S2_contig8643:1150..13221696842521.5802424-CDS-E_fasciculatus_S2_contig8643:1150..1322Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8643 1151..1322 +
1696842521.5977108-CDS-E_fasciculatus_S2_contig8643:1820..19281696842521.5977108-CDS-E_fasciculatus_S2_contig8643:1820..1928Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8643 1821..1928 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8643.16759.1prot_E_fasciculatus_S2_contig8643.16759.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8643 562..1928 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8643.16759.1

>prot_E_fasciculatus_S2_contig8643.16759.1 ID=prot_E_fasciculatus_S2_contig8643.16759.1|Name=mRNA_E_fasciculatus_S2_contig8643.16759.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=131bp
MVFLTVVDMALNSSVEHETFGTWDETGRDGTALVLILGFQLVVQVGNFAC
LFLMMFETYPFRVGLMGMLTSQYLTVYVINVLYFVTTACVYGYRVASMVQ
GEEGMGIWQVWDLRGYLPLSIFHKIGECRR*
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mRNA from alignment at E_fasciculatus_S2_contig8643:508..2045+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8643.16759.1 ID=mRNA_E_fasciculatus_S2_contig8643.16759.1|Name=mRNA_E_fasciculatus_S2_contig8643.16759.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1538bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8643:508..2045+ (Ectocarpus fasciculatus EfasUO2)
GCTTCTCTTGTCAGAGGGGGCGACTCGCTCCTGTTCAGGGTGAAGCTTTT
CATCATGGTGTTTCTGACGGTCGTCGACATGGCTCTCAACAGCAGCGTGG
AGCACGAAACCTTTGGCACGTGGGATGAGACCGGGAGGGACGGAACCGCC
CTCGTGCTTATCCTTGGGTAAGGAAGGCCGGCCGAGATTTTAATGAGGAG
TATGCTTCCGTACTGGAGAGGCTGGTGTGTTACACACGTCTGACAGGCTC
CATCTACCAACAGTGAAAACTTGGGCGCCAGCGTCTAGTTTGTTCAGTAC
AGTGGTAGGACTTCGATTGACGCACGTTTTTTGTGACTTCGGGTACAGAA
CCCTCACTTTTTTACACTTACATTGTTTGGGTCCGGTACTCTGCCGAGCA
CCCCAAACGTAAGTGAATGTTAAGGAATTTGCGATGTACACATATACCTC
ACAGAGGGAACAAGTCGGGAGCGAGCCTCGCGCCAAGGAGGTTCTTGTGT
AGGTATTGATTCTGATGGTATGTGTAGTTGGAACAAATTTTGCACTCAAT
CGATCTGGTCACATCCTCAAGAATCAGACACCCGCCTCGCTGACAGATAA
CCCGCGCCCCCCTCTTCCGGACGTGTGCTCCAAATACGTGCAGGTTTCAG
CTCGTGGTCCAAGTGGGGAACTTCGCATGTCTTTTTCTTATGATGTTTGA
GACTTACCCGTTTCGAGTCGGGCTTATGGGGATGCTGACGTCGCAATACC
TGACGGTGTACGTCATAAACGTCTTGTATTTTGTCACGACAGCCTGCGTC
TACGGCTATCGAGTGGTGAGAGACACGACCAAACGCAGCATCGTTTGACG
AAGAAAGTGTTGACTCCCGCATGTAGCGTATCGATGGGCTTAATTTATAC
CAGAACGGCCTCCCAAACCCTGCTCCACGAGCCTGGGAGTCGCTGTGACG
AATATGATCATGTTGGATTGGCGCAATTGGCCACATCTCTTTAACAACAA
GCAGCACCTACGTCGCGCGTTTTTTTTATGTATGGAAACGGTAACGAGAT
GCTGTACAATACTGCCAATGGCATGGGTCTTGGTTTCTCTAGCCCCGCCA
ACTAGCTTCATGTCTCCAACACATTTGTTTGCGGGAGGAAGCGCAGGTTT
TGTCACGTGTCAACCTTGAGACAACCGTCCTTACCCTTCCAGCAGCGACA
AGACCAACTCGTGGTTGACCGCCTGTCTGTGTGCTTTCACACTCCACCTC
ACGTCTCCCTTTGTTTGCTGCGCATGCTGTATACTTTCGCTACCAACTGT
TTTTTGTCAACAGGCATCCATGGTGCAAGGCGAAGAAGGCATGGGAATCT
GGCAGGTGTGGGACTTGCGCGGCTACCTTCCTCTCTCAATCTTCCACAAG
ATAGGCGAGTGCCGCCGGTGACGCCTGGCTCCGCCGGCCGTTCCGCCCGC
CGAGCAACCAGTCGTGTCCCTCTCTGGCGACGACCATCTCAATCTGGCGC
TCTCGACAAGTCAGGCAGCCATGAGAACCCCGGAAGCC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8643:508..2045+

>mRNA_E_fasciculatus_S2_contig8643.16759.1 ID=mRNA_E_fasciculatus_S2_contig8643.16759.1|Name=mRNA_E_fasciculatus_S2_contig8643.16759.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=393bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8643:508..2045+ (Ectocarpus fasciculatus EfasUO2)
ATGGTGTTTCTGACGGTCGTCGACATGGCTCTCAACAGCAGCGTGGAGCA
CGAAACCTTTGGCACGTGGGATGAGACCGGGAGGGACGGAACCGCCCTCG
TGCTTATCCTTGGGTTTCAGCTCGTGGTCCAAGTGGGGAACTTCGCATGT
CTTTTTCTTATGATGTTTGAGACTTACCCGTTTCGAGTCGGGCTTATGGG
GATGCTGACGTCGCAATACCTGACGGTGTACGTCATAAACGTCTTGTATT
TTGTCACGACAGCCTGCGTCTACGGCTATCGAGTGGCATCCATGGTGCAA
GGCGAAGAAGGCATGGGAATCTGGCAGGTGTGGGACTTGCGCGGCTACCT
TCCTCTCTCAATCTTCCACAAGATAGGCGAGTGCCGCCGGTGA
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