mRNA_E_fasciculatus_S2_contig8625.16749.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8625.16749.1
Unique NamemRNA_E_fasciculatus_S2_contig8625.16749.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8625.16749.1 vs.
Match: Hypothetical (leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPS8_ECTSI)

HSP 1 Score: 696 bits (1796), Expect = 1.240e-237
Identity = 426/541 (78.74%), Postives = 464/541 (85.77%), Query Frame = 1
Query:    1 GGPEHGDLDSWRARIKPQQQQTPEHDRAKEEAAPVQHSPPSPQDTEAAETDIVHPRPSSPVMEEEDPDYSFGEQVASFAGLAALARGDREALDEIKELIKAPPIRAPPAGSVSPASEPIDKEKLEDLNRLAEMVTGLGDIYSSHMEDQGMQEREQGLSPAHKAYFNAVRDGVSNAYLAASVVGSNLVTTSKTGGIGTAGKALKLLSAAIPMVGGLGAIAAAALKTGDRYLQTRRVVKIADIARDPVECCSLARRLAXXXXXXXXXXXXXXXXXXXXXXXXXGGSEWSQGEYSLPDGARQDRDVMEWLADEVANFEPQDHHATKTTPEEQAGRRLGKKHLHTLLLAVGKGCLEGAKSVEEKVELLVRAVLPEDEGNAVSTPQ---VLMAHATSSTDSVLKPTDSAASLLVGRGSVESDASSVAALRGEIQSLRDSLEDSNAKQSKLENEVTTLKKQQGKSPPDSDGLVAIGGGLALQQRVIVTKKPEDFLEESQREAVAEDRQVSLREFMEYKELQDEKNRGMEYRIEDHEVQINRKQDRKR 1614
            GGPEHGDLDSWRARI+PQQQ+  EHD  KEEA   QHS  S QD E  ETDIVHP PS P  EE DP +SFGEQVASFAGLAAL +GD EALDEIK+LI+APPIRAPPA  VSPA EPID+EKL DLNRLAEM T L +I SSHMEDQ MQEREQGLS A KAYFNAVRDGV NA+LA+SVVGSNLV TSKTGGIGTAGKALKLLSAA+PMVGGLG IA+AALKTGDRY+QTRRVVKIADIARD VECCSLARRLAXXXXXXXXXXXXXXXXXXXXXXXX GG  WSQGEY+LPDGAR DRDVMEW ADEVAN EPQDHHAT+TTPEEQAGRRLGKKHL TLLLAVG G LEGAKS+EEKVELLVR VLPEDEGNAVSTPQ   V++    SSTDSVL+ TDSAASLL+GR SVESD SSVAAL GEIQSLR SL+DSNAKQSKLENEV++LK++  KS PDSDG+V+IGGG AL QRV+VTKKPE FLEESQ EAVA D+ V + E++EYKE Q E +RG   +I+  EV+++RKQDRKR
Sbjct:  649 GGPEHGDLDSWRARIQPQQQREAEHDDPKEEADVAQHSLRS-QDAETVETDIVHPGPSCPAEEERDPGHSFGEQVASFAGLAALTKGDCEALDEIKQLIRAPPIRAPPADGVSPAPEPIDEEKLRDLNRLAEMATTLSEIASSHMEDQWMQEREQGLSQARKAYFNAVRDGVCNAFLASSVVGSNLVATSKTGGIGTAGKALKLLSAAVPMVGGLGGIASAALKTGDRYIQTRRVVKIADIARDAVECCSLARRLAXXXXXXXXXXXXXXXXXXXXXXXXGGGG-WSQGEYALPDGAR-DRDVMEWFADEVANLEPQDHHATRTTPEEQAGRRLGKKHLQTLLLAVGNGRLEGAKSIEEKVELLVRTVLPEDEGNAVSTPQAPDVVVEQVPSSTDSVLRQTDSAASLLIGRDSVESDVSSVAALMGEIQSLRVSLDDSNAKQSKLENEVSSLKEKV-KSAPDSDGVVSIGGGQALMQRVVVTKKPETFLEESQHEAVAADQYVPIDEWIEYKERQAEIDRGHSDKIDGLEVKVDRKQDRKR 1185          
BLAST of mRNA_E_fasciculatus_S2_contig8625.16749.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBQ0_9PHAE)

HSP 1 Score: 565 bits (1455), Expect = 2.500e-186
Identity = 371/541 (68.58%), Postives = 414/541 (76.52%), Query Frame = 1
Query:    1 GGPEHGDLDSWRARIKPQQQQTPEHDRAKEEAAPVQHSPPSPQDTEAAETDIVHPRPSSPVMEEEDPDYSFGEQVASFAGLAALARGDREALDEIKELIKAPPIRAPPAGSVSPASEPIDKEKLEDLNRLAEMVTGLGDIYSSHMEDQGMQEREQGLSPAHKAYFNAVRDGVSNAYLAASVVGSNLVTTSKTGGIGTAGKALKLLSAAIPMVGGLGAIAAAALKTGDRYLQTRRVVKIADIARDPVECCSLARRLAXXXXXXXXXXXXXXXXXXXXXXXXXGGSEWSQGEYSLPDGARQDRDVMEWLADEVANFEPQDHHATKTTPEEQAGRRLGKKHLHTLLLAVGKGCLEGAKSVEEKVELLVRAVLPEDEGNAVSTPQ---VLMAHATSSTDSVLKPTDSAASLLVGRGSVESDASSVAALRGEIQSLRDSLEDSNAKQSKLENEVTTLKKQQGKSPPDSDGLVAIGGGLALQQRVIVTKKPEDFLEESQREAVAEDRQVSLREFMEYKELQDEKNRGMEYRIEDHEVQINRKQDRKR 1614
            GG EHG+LDSWRARI+PQQQ+  EHD  KEEA   QHSP S  + E                 E DP  SF EQVASFAGLAAL +GDREALDEIK+LI+ PPIRAP A  VSPA EPID+  L DLNRLAEM T LG+I SSHMEDQ MQ REQGLS A KAYFNAVRDGV NA+LA+SVVGSNLV TSKTGGIGTAGKAL LLSAA+PMVGGLG IAA ALKTGDRY+QTRRV KIADIARD VECCSLARRLAXXXXXXXXXXXXXXXXXXXXXXXXX    W QGEY+LPDGA + +DVMEW ADEV+NFEPQ  HAT+ TPEEQAG RLGKKHL TLLLAVG GCLEGA ++EEKVELLVR V PEDEGNAVSTP+   VL+    S  DSVLKPTDS AS LVGR S E DAS++AAL  E++SL  SL+D NAK S LENEV+ + ++  KS PDSDG+++IG G AL+QRV   K PE FLE S+ EAVA D+ V    + E    Q E NRG + RI+  E ++ RKQD+KR
Sbjct:  675 GGSEHGNLDSWRARIQPQQQREAEHDEPKEEADVAQHSPRSQDEEETVXXXXXXXXXXXXXXXERDPGDSFREQVASFAGLAALTKGDREALDEIKQLIRVPPIRAPYADGVSPAPEPIDEANLRDLNRLAEMATTLGEIASSHMEDQWMQGREQGLSQARKAYFNAVRDGVCNAFLASSVVGSNLVATSKTGGIGTAGKALALLSAAVPMVGGLGGIAAGALKTGDRYIQTRRVAKIADIARDAVECCSLARRLAXXXXXXXXXXXXXXXXXXXXXXXXXXXG-WRQGEYALPDGAGE-KDVMEWFADEVSNFEPQHRHATRMTPEEQAGSRLGKKHLQTLLLAVGTGCLEGANNIEEKVELLVRTVFPEDEGNAVSTPRAPNVLLEQVPSPIDSVLKPTDSPASPLVGRDSPEIDASTIAALMEEMRSLWVSLKDWNAKHSDLENEVSKIMEKV-KSLPDSDGVLSIGEGQALKQRVY-DKTPEKFLEASEHEAVALDQPVLAHVWRESMVRQAEINRGHDDRIDRLEGKVARKQDQKR 1211          
BLAST of mRNA_E_fasciculatus_S2_contig8625.16749.1 vs.
Match: Leucine (rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA2_ECTSI)

HSP 1 Score: 272 bits (695), Expect = 1.790e-77
Identity = 214/548 (39.05%), Postives = 286/548 (52.19%), Query Frame = 1
Query:    1 GGPEHGD-LDSWRARIKPQQQQTPEHDRAKEEAAPVQHSPPSPQDTEAAETDIVHPRPSSPVMEEEDPDYSFGEQVASFAGLAALARGDREALDEIKELIKAPPIRAPPAGSVSPASEPIDKEKLEDLNRLAEMVTGLGDIYSSHMEDQGMQEREQGLSPAHKAYFNAVRDGVSNAYLAASVVGSNLVTTSKTGGIGTAGKALKLLSAAIPMVGGLGAIAAAALKTGDRYLQTRRVVKIADIARDPVECCSLARRLAXXXXXXXXXXXXXXXXXXXXXXXXX--------GGSEWSQGEYSLPDGARQDRDVMEWLADEVANFEPQDHHATKTTPEEQAGRRLGKKHLHTLLLAVGKGCLEGAKSVEEKVELLVRAVLPEDEGNAVSTPQVLMA---HATSSTDSVLKPTDSAASL-LVGRGSVESDASSVAALRGEIQSLRDSLEDSNAK-QSKLENE--------------------------------------VTTLKKQQGKSPPDSDGLVAIGGGLALQQRVIVTKKP-EDFLEESQREAVA 1485
            GGP  G+ LDSWRAR++ Q+Q     D   E  A    S  S Q  +  +TD     P S    E D D+    Q++SF+ L+ L  G  + L+++++L++A  I        SP +   +   L +LNRL  M   LGD+ S H+ ++ +Q RE  L P  KAY+ A+R G+ NAYLAASVV S+LV TSKTG +GTAGK L+ LS+A+P+V GL  +AAAALK GDRYLQTRRV KI DIA D  +CC LAR LA                                 GG  WSQ   + PD A ++  VM+W  +EVA++EP +  A KTT   QAGR+LGK+HL TLL AVG+ CL G  + +EKV++LV  +LPE E    ST  V      H  SS     + + +AA+   V  G+ +SD   VAAL   + S+R   E ++ + ++ LE                                           L K+  K  PDSD LVA GGGLAL+QR  VT+   +DFLE +Q  A A
Sbjct:  341 GGPTRGESLDSWRARLRQQEQAAVREDTKAENPAARTSS--STQGDKPGKTDRATTEPISGSSREADMDHMTQAQISSFSALSTLCGGSHKRLEQVRQLVEALDINR-----FSPGTGLSETGTLGELNRLVAMAEDLGDMVSRHVMNEDIQRRELALPPGPKAYYTAIRTGLCNAYLAASVVCSSLVCTSKTGRMGTAGKTLEFLSSAVPVVSGLAGLAAAALKAGDRYLQTRRVSKICDIAPDSTDCCLLARTLALQLSDGYVDGTLPTTDTAEERGSHATAGMGGVEGGCGWSQDIGASPDSATEEA-VMDWFVEEVADYEPNNVDARKTTAAVQAGRKLGKRHLQTLLKAVGRDCLRGTNTPDEKVKVLVGIILPEAERRVGSTSHVTRERTNHDASSAQPASRQSHAAATRPAVPDGAAKSDID-VAALMERVASMRMRTEATHEELKAGLEASHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXILNKKVMKPGPDSDSLVASGGGLALKQRQAVTETALDDFLERAQERAPA 879          
BLAST of mRNA_E_fasciculatus_S2_contig8625.16749.1 vs.
Match: Leucine (Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA0_ECTSI)

HSP 1 Score: 254 bits (648), Expect = 4.350e-70
Identity = 208/561 (37.08%), Postives = 284/561 (50.62%), Query Frame = 1
Query:   22 LDSWRARIKPQQQQTPEHDRAKEEAAPVQHSPPSPQDTEAAETDIVHPRPSSPVMEEEDPDYSFGEQVASFAGLAALARGDREALDEIKELIKAPPI-RAPPAGSVSPASEPIDKEKLEDLNRLAEMVTGLGDIYSSHMEDQGMQEREQGLSPAHKAYFNAVRDGVSNAYLAASVVGSNLVTTSKTGGIGTAGKALKLLSAAIPMVGGLGAIAAAALKTGDRYLQTRRVVKIADIARDPVECCSLARRLAXXXXXXXXXXXXXXXXXXXXXXXXX--------GGSEWSQGEYSLPDGARQDRDVMEWLADEVANFEPQDHHATKTTPEEQAGRRLGKKHLHTLLLAVGKGCLEGAKSVEEKVELLVRAVLPEDEGNAVSTP---QVLMAHATSSTDSVLKPTDSAASL-LVGRGSVESDASSVAALRGEIQSLRDSLEDSN----------------------------------------------AKQSKLEN--------------EVTTLKKQQGKSPPDSDGLVAIGGGLALQQRVIVTKKPEDFLEESQREAVA 1485
            LDSWRAR++ QQ+Q  E +  K E  P   +  S Q  +  + D     P S    E D D     Q++SF+ L+ L  G  ++L+++++L++A  I R+ P   +S      +   L ++NRL  M   LG + S H+ ++ +Q RE  L P  KAY+ A+R G+ NAYLAASVV S+LV TSKTG +G AGK L+ LS+A+P+V GL  +AAAALK GDRYLQTRRV KI DIA D  +CC LAR LA                                 GG  WSQ   + PD A ++  VM+W  +EVA++EP +  A KTTP  QAGR+LG +HL TLL AVG+ CL G  + +EKV++LV  +LPE E    ST    +  + H  SS     + + +AA+   V  G+ +SD   VAAL   + S+R   E ++                                              A+ ++L +               V  L K   K  PDSD LV  GGG ALQQR  VT++ +DFLE SQ  A A
Sbjct:  561 LDSWRARLR-QQEQAAEREDTKAEN-PAARTSSSTQGDKPGKPDRATTGPISGSSREADMDDMTQAQISSFSALSTLCGGRHKSLEQVRQLVEALGINRSSPGTGLS------ETGTLGEVNRLVAMAEDLGGMVSRHVMNEDIQRRELALPPGPKAYYTAIRTGLCNAYLAASVVCSSLVCTSKTGRMGAAGKTLEFLSSAVPVVSGLAGLAAAALKAGDRYLQTRRVSKICDIAPDSTDCCLLARTLALQLSDGYVDGTLPTTDTAEERGTHTTAGMGGVEGGCGWSQDIGASPDSATEEA-VMDWFVEEVADYEPNNLDARKTTPAVQAGRKLGTRHLQTLLKAVGRDCLRGTNTPDEKVKVLVGIILPEAERRVGSTSHGTRERLNHDASSAQPASRQSHAAATRPAVPDGAPKSDID-VAALMERMASMRIRTEATHEELKAGLEASHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAENARLNDVXXXXXXXXXXXXXXVKILNKMVMKPGPDSDSLVPSGGGQALQQRQAVTERVDDFLERSQERAPA 1111          
BLAST of mRNA_E_fasciculatus_S2_contig8625.16749.1 vs.
Match: Putative (Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA1_ECTSI)

HSP 1 Score: 242 bits (618), Expect = 1.370e-66
Identity = 165/388 (42.53%), Postives = 218/388 (56.19%), Query Frame = 1
Query:    1 GGPEHGD-LDSWRARIKPQQQQTPEHDRAKEEAAPVQHSPPSPQDTEAAETDIVHPRPSSPVMEEEDPDYSFGEQVASFAGLAALARGDREALDEIKELIKAPPIRAPPAGSVSPASEPIDKEKLEDLNRLAEMVTGLGDIYSSHMEDQGMQEREQGLSPAHKAYFNAVRDGVSNAYLAASVVGSNLVTTSKTGGIGTAGKALKLLSAAIPMVGGLGAIAAAALKTGDRYLQTRRVVKIADIARDPVECCSLARRLAXXXXXXXXXXXXXXXXXXXXXXXXX----GGSE----WSQGEYSLPDGARQDRDVMEWLADEVANFEPQDHHATKTTPEEQAGRRLGKKHLHTLLLAVGKGCLEGAKSVEEKVELLVRAVLPEDEGNAVST 1137
            GGP   + LDSWRAR++ Q+Q     D   E  A    S  S Q  +  + D     P S    E D D+    Q++SF+ L+ L  G + +L+++ +L++A  I        SP +       L +LNRL  M   LGD+ S H+ ++ +Q RE  L P  KAY+ A+R G+ NAYLAASVV S+LV TSKTG +GTAGK L+ LS+A+P+V GL  +AAAALK GDRYLQTRRV KI D+A D  +CC LAR LA                             GG E    WSQ   + PD A ++  VM+W  +EVA++EP    A KTT   QAGR+LG +HL TLL AVG+ CL G  + +EKV++LV  +LPE E    ST
Sbjct:  368 GGPAKDESLDSWRARLRQQEQAAVREDTKAENPAVRTSS--STQGDKPGKPDGATTEPISGSSREADMDHITQAQISSFSSLSTLCGGSQASLEQVGQLVEALGINRS-----SPGTGLNGTGTLGELNRLVAMAEDLGDMVSRHVTNEDIQRRELALPPGPKAYYTAIRTGLCNAYLAASVVSSSLVCTSKTGRMGTAGKTLEFLSSAVPVVSGLAGLAAAALKAGDRYLQTRRVSKICDMAPDSTDCCLLARALALQLSDGYVDGTLPTIDTAEERGTHTTAGMGGVEGECGWSQDIGASPDSATEEA-VMDWFVEEVADYEPNKLDARKTTAAVQAGRKLGTRHLQTLLKAVGRDCLRGTNTPDEKVKVLVGIILPEAERKVGST 747          
BLAST of mRNA_E_fasciculatus_S2_contig8625.16749.1 vs.
Match: Hypothetical (leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L2_ECTSI)

HSP 1 Score: 214 bits (546), Expect = 2.600e-58
Identity = 201/612 (32.84%), Postives = 287/612 (46.90%), Query Frame = 1
Query:    1 GGPEHGD-LDSWRARIKPQQQQTPEH---DRAKEEAAPVQHSPPSPQDTEAAETDIVH------------PRPSSPVMEE---------------EDPDYSFGEQVASFAGLAALARGDREALDEIKELIKAPPIRAPPAGSVSPASEPIDKEKLEDLNRLAEMVTGLGDIYSSHMEDQGMQEREQGLSPAHKAYFNAVRDGVSNAYLAASVVGSNLVTTSKTGGIGTAGKALKLLSAAIPMVGGLGAIAAAALKTGDRYLQTRRVVKIADIARDPVECCSLARRLAXXXXXXXXXXXXXXXXXXXXXXXXX--GGSEWSQGEYSLPDGARQDRDVMEWLADEVANFEPQDHHATKTTPEEQAGRRLGKKHLHTLLLAVGKGCLEGAKSVEEKVELLVRAVLPEDEGNAVSTPQVLMAHATSSTDSVLKPTDSAA---SLLVGRGSVESDASSVAALRGEIQSLRDSLEDS------------------------------------------NAKQSKLENEVTTLKKQQGKSPPDSDGLVAIGGGLALQQRVIVTKKPEDFLEESQREAV--AEDRQVSLREFMEYKELQDEKNRGMEYRIEDHEVQINR 1596
            GGP  G+ LDSWR R+    + TP+    D+ +E+A   + SPP     +  + D               P     V+EE               E+ D     Q +S AGL  L R + EAL++I+ +I+A  +R     S+ P  E  D +   +L  L  M T LG++   H ED  ++ +E  L P  K Y++AVR G+  AYLAASV+ SN V+TSKTGG+G  G ALKL+S A+P++GGL  +A  AL+ GD YLQTRR+VKI  +A D VECCSLARRLA                           GGS   +G   +P G   + DV ++L +EV  +E  DH           G+RLGKKHL  LL A+  GCL+G+    +K+++L+  +LPE +    +TP       T     V  P   AA   S L  R    +  + +AAL+      +  LE+                                             K  KLE  V  L      S PD D  V  GG LAL++RV V++  + FL+ ++  A   A+   V++ E  E++ LQ+EK+R  E R+ + E QI++
Sbjct:   64 GGPAKGEGLDSWRERMGRNPKTTPQTLTGDKKEEDAPAPRTSPPPVLLPQQQQIDAXXXXXXXXXXXXXXPNSREVVVEERVRSPEHASLSPGKAEEVDPMVRAQFSSSAGLGPLIRENPEALEDIQRVIEATTVR-----SIHPDDELSDIQSRRNLGTLVTMSTALGEVALKHTEDMSVRRKELALPPFSKEYYSAVRSGLCQAYLAASVIDSNWVSTSKTGGMGKVGAALKLMSGAVPLIGGLPKLAGKALEAGDTYLQTRRLVKITAMAPDTVECCSLARRLALQLTDGLRNNASATDDDNNQVWVNTTAGGSGCGRGADMMP-GDMSEEDVFKYLLEEVTAYERNDH----------GGKRLGKKHLRKLLKAIQGGCLDGSNGTVQKIKILLLEILPEADDKPAATP------GTPKEVMVRSPPAGAAAHDSGLPSRAEFAAIQAELAALKSAKDKQQAELEEXXXXXVAVESVXXXXXXXXEALKSGRRXXXXXXXXXXXXXXXLERKVKKLEEHVPELD-----SEPDDD--VDFGGELALRRRVAVSETAKGFLDRARDRAARAADHHPVTVSEQREFEALQNEKHREHEARLRELEGQISK 646          
BLAST of mRNA_E_fasciculatus_S2_contig8625.16749.1 vs.
Match: Hypothetical (leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA3_ECTSI)

HSP 1 Score: 212 bits (539), Expect = 3.170e-56
Identity = 204/611 (33.39%), Postives = 281/611 (45.99%), Query Frame = 1
Query:    1 GGPEHGD-LDSWRARIK-------------------------------PQQQQTPEHDRAKEEAAPVQHSPPSPQDTEAAETDIVHPRPSSPVMEEEDPDYSFGEQVASFAGLAALARGDREALDEIKELIKAPPIRAPPAGSVSPASEPIDKEKLEDLNRLAEMVTGLGDIYSSHMEDQGMQEREQGLSPAHKAYFNAVRDGVSNAYLAASVVGSNLVTTSKTGGIGTAGKALKLLSAAIPMVGGLGAIAAAALKTGDRYLQTRRVVKIADIARDPVECCSLARRLAXXXXXXXXXXXXXXXXXXXXXXXXX--GGSEWSQGEYSLPDGARQDRDVMEWLADEVANFEPQDHHATKTTPEEQAGRRLGKKHLHTLLLAVGKGCLEGAKSVEEKVELLVRAVLPEDEGNAVSTPQVLMAHATSSTDSVLKPTDSAA---SLLVGRGSVESDASSVAALRGEIQSLRDSLEDS------------------------------------------NAKQSKLENEVTTLKKQQGKSPPDSDGLVAIGGGLALQQRVIVTKKPEDFLEESQ-REAVAEDRQ-VSLREFMEYKELQDEKNRGMEYRIEDHEVQI 1590
            GGP  G+ LDSWR R++                               PQQQQ    D  +E+A  +  SP   Q+  A   +      +SP   EE  D  F  Q+ S AGL +L R +  AL+ I+  I+        AGS  P +E  D +   +L  L  M T LG++   H ED  +Q +E  L P  KAY+ A+R G+  AYLAAS + S+ V TSKTGG+G  G ALKL+S+A+P++GGL  +A  AL+ GD YLQTRR+VKI  +A D VECCSLARRLA                           GGS   +G   +P G   + DV ++L +EV   E  DH           G+RLGK+HL  LL A+  GCL+G+    +K+++L+  +LPE +    +TP       T     V  P   AA   S L  R    +  + +AAL+      +  LE+                                             K  KLE  V  L      S PD D  V  GG LAL++RV V++  + FL+ ++ R A A D   V++ E  E++ LQDEK+R  E R+ + E QI
Sbjct:  259 GGPRDGEGLDSWRTRVRFEQRTKPRTLKGDQRGKDAPVPPPXAPTVLLPQQQQIDAGDETEEDAPVLLDSPNQRQEVVAGSANSTGRASTSPEKAEEV-DRLFRAQLVSSAGLDSLIRENPAALENIQLAIE-----RQVAGSFYPDNELGDMQSRRNLGTLVTMSTALGEVALRHTEDMNVQRKELALPPFSKAYYTAIRTGLCKAYLAASAIDSDWVITSKTGGMGKVGAALKLMSSAVPLIGGLPKLAGKALEAGDTYLQTRRLVKITAMAPDTVECCSLARRLALQLTDGLRNNASATDDDNNQVWVNTTAGGSGCGRGADMMP-GDMSEEDVFKYLLEEVTADERNDH----------GGKRLGKRHLRKLLKAIQGGCLDGSNGTVQKIKILLLEILPEADDKPAATP------GTPKEVMVRSPPAGAAAHDSGLPSRAEFAAIQAELAALKSAKDKQQAELEEXXXXXVAVESVXXXXXXXXEALKSGRRXXXXXXXXXXXXXXELERKVKKLEQHVPELD-----SEPDDD--VDFGGELALRRRVAVSETAKGFLDRARDRAARAVDHHPVTVSEQREFEALQDEKHREHEARLRELEGQI 839          
BLAST of mRNA_E_fasciculatus_S2_contig8625.16749.1 vs.
Match: Putative (Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH90_ECTSI)

HSP 1 Score: 206 bits (525), Expect = 2.580e-54
Identity = 156/415 (37.59%), Postives = 219/415 (52.77%), Query Frame = 1
Query:    1 GGPEHGD-LDSWRARIKPQQQQTPEHDRA--KEEAAPVQHSPPS----PQDTEAAET------------------DIVHPRPSSPVM------EEEDPDYSFGEQVASFAGLAALARGDREALDEIKELIKAPPIRAPPAGSVSPASEPIDKEKLEDLNRLAEMVTGLGDIYSSHMEDQGMQEREQGLSPAHKAYFNAVRDGVSNAYLAASVVGSNLVTTSKTGGIGTAGKALKLLSAAIPMVGGLGAIAAAALKTGDRYLQTRRVVKIADIARDPVECCSLARRLAXXXXXXXXXXXXXXXXXXXXXXXXX-----GGSEWSQGEYSLPDGARQDRDVMEWLADEVANFEPQDHHATKTTPEEQAGRRLGKKHLHTLLLAVGKGCLEGAKSVEEKVELLVRAVLPEDEGNAVST 1137
            GGP  G+ LDSWRARI+P+Q+  P+  +   KEE AP           PQ  E  E                   + V  R  SP        + E+ D  F  Q++S AGL +L R   +AL++I+ +I+     +  AGSVSP  +  D +    L  L  M T LG++   H ED  +Q +E  L     AY++AVR G+  AYLAASV+ S+ V+TSKTGG+G AG A+KL+S+A+P+VGGL  +A  AL+ GD YLQTRR+VKI  +A D V+CC LARRLA                              GG++ + G+ S       + DV E+L +EVA+++  DH           G RLGKKHL  LL A+ +G L+G+   E+K+E+LV  +LPE + +  +T
Sbjct:  309 GGPAKGEGLDSWRARIRPKQETKPQTLKGDEKEEDAPXXXXXXXXVLLPQQQETGEXXXNEKDNPVPLGFPNQREEAVWERARSPERASLSPGKAEEMDRLFSAQLSSSAGLDSLIREKPKALEDIQRVIE-----STVAGSVSPDDKLSDIDGRRKLGTLVTMSTALGEVALRHTEDMNIQRKELALPAFSNAYYSAVRSGLCQAYLAASVIDSDWVSTSKTGGMGKAGAAMKLMSSAVPVVGGLPELAGKALEAGDHYLQTRRLVKITAMASDAVDCCFLARRLALQLTDGLRNDAGATADNADEVRVDTTAGMNGGADMTPGDMS-------EEDVFEYLLEEVASYKRNDH----------GGVRLGKKHLRKLLKAIQRGSLDGSNGTEQKIEVLVLKILPEADTSLAAT 701          
BLAST of mRNA_E_fasciculatus_S2_contig8625.16749.1 vs.
Match: Putative (Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH89_ECTSI)

HSP 1 Score: 208 bits (529), Expect = 3.060e-54
Identity = 133/309 (43.04%), Postives = 179/309 (57.93%), Query Frame = 1
Query:  202 DYSFGEQVASFAGLAALARGDREALDEIKELIKAPPIRAPPAGSVSPASEPIDKEKLEDLNRLAEMVTGLGDIYSSHMEDQGMQEREQGLSPAHKAYFNAVRDGVSNAYLAASVVGSNLVTTSKTGGIGTAGKALKLLSAAIPMVGGLGAIAAAALKTGDRYLQTRRVVKIADIARDPVECCSLARRLAXXXXXXXXXXXXXXXXXXXXXXXXX-----GGSEWSQGEYSLPDGARQDRDVMEWLADEVANFEPQDHHATKTTPEEQAGRRLGKKHLHTLLLAVGKGCLEGAKSVEEKVELLVRAVLPE 1113
            D  F  Q++S AGL +L + + EAL++I+ +IK     AP AG      E  D E+   L  L  M   LG++  SH ED+ +Q +E  L+P  KAY+ AVR G+ NAYLAASV+ S+ V+TSKTGG+G  G AL LLS+A+P++ GL  +A  AL+TGD YLQTRR+ KI  +A D +ECCSLARRLA                              GGS   +    LPD   +D DV E L +EVA +E  DH           G+RLGKKHL  LL A+ +GCL+G+  +++K+ELL+  +LPE
Sbjct:  474 DRLFRVQLSSSAGLDSLIKENPEALEDIQRVIK-----APAAGGFYFDDELSDMERRRKLGALMNMAKALGEVALSHTEDKDVQRKELALAPFSKAYYTAVRSGLCNAYLAASVIDSDWVSTSKTGGMGKGGTALVLLSSAVPVISGLAGLAGKALRTGDHYLQTRRLAKITAMAADTMECCSLARRLALQLTDGLKDDTGMMDDETDQVCTHTTAGMNGGSGSGRDADILPDIIIED-DVFEHLLEEVARYERSDH----------GGKRLGKKHLRKLLKAIQRGCLDGSSGIKQKMELLLLEILPE 766          
BLAST of mRNA_E_fasciculatus_S2_contig8625.16749.1 vs.
Match: Hypothetical (leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA2_ECTSI)

HSP 1 Score: 203 bits (517), Expect = 9.360e-54
Identity = 161/405 (39.75%), Postives = 217/405 (53.58%), Query Frame = 1
Query:    1 GGPEHGD-LDSWRARIKPQQQ---QTPEHDRAKEEAAPVQHSPPSPQDT--EAAETDIVHPRPSSPVMEE-EDPDYSFGEQVASFAGLAALARGDREALDEIKELIKAPPIRAPPAGSVSPASEPIDKEKLEDLNRLAEMVTGLGDIYSSHMEDQGMQEREQGLSPAHKAYFNAVRDGVSNAYLAASVVGSNLVTTSKTGGIGTAGKALKLLSAAIPMVGGLGAIAAAALKTGDRYLQTRRVVKIADIARDPVECCSLARRLAXXXXXXXXXXXXXXXXXXXXXXXXX-----GGSEWSQGEYSLPDGARQDRDVMEWLADEVANFEPQDHHATKTTPEEQAGRRLGKKHLHTLLLAVGKGCLEGAKSVEEKVE----------LLVRAVLPEDEGNAVSTPQVL 1149
            GGP +G+ LDSWR R+ P+ +   Q    DR  E+ APV   PP  ++   EA    +  P  +S   E+ E+ D  F  Q++S AGL +L R +  AL++I+ +I+     A  AGSVS  +E  D +    L  L  M T LG++   H ED  ++  E  L P  KAY+ AVR G+ NAYLAASV+ S+ V+TSKTGG+G AG ALK++S AIP+VGG   +A  A+K+GD YLQTRR+VKI  +A D +ECCSLARRLA                              GGS   QG  SLP     + DV E++  EVA+    DH           G+RLGKKHL  LL AV +GCL+G    E+K            +L+  +LPE +    +T  +L
Sbjct:  249 GGPAYGEGLDSWRERLAPKHKTKLQIFRGDRM-EKDAPV---PPGSRNGRHEAVGERVRSPEHASLSPEKAEEADRVFKAQLSSSAGLDSLIRENPGALEDIQRVIE-----ASVAGSVSVDNELSDMQSRRKLGTLVTMSTALGEVVLKHTEDMDVKREELTLPPFSKAYYTAVRTGICNAYLAASVIDSDWVSTSKTGGMGKAGAALKVMSRAIPVVGGPTGLAGKAMKSGDHYLQTRRLVKITAMAHDAIECCSLARRLALQLAGGLRNDANAGANEVDHIRADITAGMNGGSGSGQGPNSLP-AIMSEGDVFEYVLKEVASCGHNDH----------GGKRLGKKHLRKLLKAVQRGCLDGLSCTEQKARTRMSSRQQMAVLLLEILPEADIRHAATSSLL 633          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8625.16749.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
Hypothetical1.240e-23778.74leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
Uncharacterized2.500e-18668.58protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Leucine1.790e-7739.05rich repeat protein n=1 Tax=Ectocarpus siliculosus... [more]
Leucine4.350e-7037.08Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus... [more]
Putative1.370e-6642.53Leucine Rich Repeat Protein n=1 Tax=Ectocarpus sil... [more]
Hypothetical2.600e-5832.84leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
Hypothetical3.170e-5633.39leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
Putative2.580e-5437.59Leucine Rich Repeat Protein n=1 Tax=Ectocarpus sil... [more]
Putative3.060e-5443.04Leucine Rich Repeat Protein n=1 Tax=Ectocarpus sil... [more]
Hypothetical9.360e-5439.75leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8625contigE_fasciculatus_S2_contig8625:45..4282 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score705.7
Seed ortholog evalue1.7e-200
Seed eggNOG ortholog2880.D7FPS8
Model size1614
KEGG koko:K04730,ko:K04733
KEGG Pathwayko04010,ko04064,ko04620,ko04621,ko04624,ko04722,ko05133,ko05140,ko05142,ko05145,ko05152,ko05162,ko05164,ko05169,map04010,map04064,map04620,map04621,map04624,map04722,map05133,map05140,map05142,map05145,map05152,map05162,map05164,map05169
KEGG ModuleM00686
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005623,GO:0005886,GO:0005911,GO:0009506,GO:0016020,GO:0030054,GO:0042995,GO:0044464,GO:0055044,GO:0071944,GO:0090406,GO:0120025
Exons10
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGs2QQYD@2759,COG4886@1
EC2.7.11.1
Cds size1614
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8625.16749.1prot_E_fasciculatus_S2_contig8625.16749.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8625 45..4282 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842520.6636815-CDS-E_fasciculatus_S2_contig8625:44..4671696842520.6636815-CDS-E_fasciculatus_S2_contig8625:44..467Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8625 45..467 +
1696842520.677359-CDS-E_fasciculatus_S2_contig8625:715..8831696842520.677359-CDS-E_fasciculatus_S2_contig8625:715..883Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8625 716..883 +
1696842520.6903977-CDS-E_fasciculatus_S2_contig8625:1144..12641696842520.6903977-CDS-E_fasciculatus_S2_contig8625:1144..1264Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8625 1145..1264 +
1696842520.7012165-CDS-E_fasciculatus_S2_contig8625:1397..15301696842520.7012165-CDS-E_fasciculatus_S2_contig8625:1397..1530Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8625 1398..1530 +
1696842520.7164762-CDS-E_fasciculatus_S2_contig8625:2046..21891696842520.7164762-CDS-E_fasciculatus_S2_contig8625:2046..2189Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8625 2047..2189 +
1696842520.728679-CDS-E_fasciculatus_S2_contig8625:2361..24541696842520.728679-CDS-E_fasciculatus_S2_contig8625:2361..2454Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8625 2362..2454 +
1696842520.741721-CDS-E_fasciculatus_S2_contig8625:2850..31051696842520.741721-CDS-E_fasciculatus_S2_contig8625:2850..3105Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8625 2851..3105 +
1696842520.7511692-CDS-E_fasciculatus_S2_contig8625:3253..33171696842520.7511692-CDS-E_fasciculatus_S2_contig8625:3253..3317Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8625 3254..3317 +
1696842520.7606254-CDS-E_fasciculatus_S2_contig8625:3642..37201696842520.7606254-CDS-E_fasciculatus_S2_contig8625:3642..3720Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8625 3643..3720 +
1696842520.7719183-CDS-E_fasciculatus_S2_contig8625:4145..42821696842520.7719183-CDS-E_fasciculatus_S2_contig8625:4145..4282Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8625 4146..4282 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8625.16749.1

>prot_E_fasciculatus_S2_contig8625.16749.1 ID=prot_E_fasciculatus_S2_contig8625.16749.1|Name=mRNA_E_fasciculatus_S2_contig8625.16749.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=538bp
GGPEHGDLDSWRARIKPQQQQTPEHDRAKEEAAPVQHSPPSPQDTEAAET
DIVHPRPSSPVMEEEDPDYSFGEQVASFAGLAALARGDREALDEIKELIK
APPIRAPPAGSVSPASEPIDKEKLEDLNRLAEMVTGLGDIYSSHMEDQGM
QEREQGLSPAHKAYFNAVRDGVSNAYLAASVVGSNLVTTSKTGGIGTAGK
ALKLLSAAIPMVGGLGAIAAAALKTGDRYLQTRRVVKIADIARDPVECCS
LARRLALRLADGLAVGATSMADTLAGTIGGTGGSEWSQGEYSLPDGARQD
RDVMEWLADEVANFEPQDHHATKTTPEEQAGRRLGKKHLHTLLLAVGKGC
LEGAKSVEEKVELLVRAVLPEDEGNAVSTPQVLMAHATSSTDSVLKPTDS
AASLLVGRGSVESDASSVAALRGEIQSLRDSLEDSNAKQSKLENEVTTLK
KQQGKSPPDSDGLVAIGGGLALQQRVIVTKKPEDFLEESQREAVAEDRQV
SLREFMEYKELQDEKNRGMEYRIEDHEVQINRKQDRKR
back to top

mRNA from alignment at E_fasciculatus_S2_contig8625:45..4282+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8625.16749.1 ID=mRNA_E_fasciculatus_S2_contig8625.16749.1|Name=mRNA_E_fasciculatus_S2_contig8625.16749.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4238bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8625:45..4282+ (Ectocarpus fasciculatus EfasUO2)
GGCGGGCCTGAACATGGGGATCTTGACTCGTGGAGAGCAAGAATAAAGCC GCAGCAGCAGCAGACACCGGAGCACGATAGGGCAAAAGAAGAAGCCGCTC CTGTGCAGCACAGCCCCCCATCACCACAAGACACGGAAGCGGCGGAAACA GATATCGTCCACCCTCGACCCTCTTCCCCAGTGATGGAGGAGGAAGACCC GGATTACTCATTTGGGGAGCAAGTCGCTTCCTTTGCGGGCTTGGCAGCGC TTGCTAGAGGAGATCGCGAGGCTCTGGACGAGATCAAAGAGCTCATCAAA GCACCGCCCATCAGAGCACCACCCGCTGGTAGCGTTTCTCCGGCCTCAGA GCCGATCGACAAAGAAAAGCTCGAGGACCTCAACAGGCTGGCGGAAATGG TTACGGGTCTAGGCGATATTTATGTGAGTACCCTGGGGTGGAAATCGTTT ATTCCGACACACAGCAACAGTGTGCAAGGGCTAAGCTGACACGATCTAGT TGATTTTCACGTGGTGCGCATTCAGTTGTATGCCGCACCAAAGCAATCAC TGCCATTCCTTGCGGAGAGTCTATGCCCCGACCACTATGTATCAAACATG CATGGACCAAGCGTGCCCTGTGCGTGCGTTCTTCTTGAAAAAAACTCCGT TCGTTATGGTCGGGTGCGCAGTCCAGCCACATGGAGGATCAGGGAATGCA GGAGAGGGAGCAGGGTTTGTCGCCGGCGCACAAGGCGTACTTCAACGCCG TCCGGGATGGCGTTAGTAACGCATATCTCGCTGCCAGCGTCGTCGGCAGC AACTTGGTTACCACGAGCAAGACCGGTGGGATAGGCACGGTAAGCGCTGC TATGGGTACGAGACCTGATTTTGTCATTCCGTTGTTTTTCAAGTGTGTGT TATGAGATGTGCATGTGGCGCGTGCACCCTAGTCTTAGCCCGATGTGCTC TTCTTCTTCTGCAGGCAGGAAAGGCCCTGAAATTGCTGTATGGGTACGAG ACCTGATTTTGTCATTCCGTTGTTTTTCAAGTGTGTGTTATGAGATGCAT GTGGCGCGTGCACCCCAGTCTTAGCCCGATGTGCTCTTCTTCTTTTGCAG GCAGGAAAGGCCCTGAAATTGCTGTCTGCCGCGATTCCTATGGTTGGAGG GCTAGGAGCGATCGCAGCCGCGGCTTTGAAGACGGGAGACCGCTACCTCC AAACTCGGCGAGTCGTGAAGGTAAGCCTCTCCTCGCGCGTCTACGGTAGG TCGACGTCGTAACATATTTAGGTTGCGGCCACCTCTCTTGCCCCCGACCT GCGATACCCTTGAAAAAATTGTACGCCGACCATCCTCTTGGTCGCTTTGG CAGATCGCCGACATCGCGAGGGACCCGGTTGAGTGCTGTTCGCTGGCAAG GAGATTGGCGTTGCGACTCGCCGACGGCCTTGCGGTTGGCGCTACCTCCA TGGCCGACACGTTAGCGGGCACGATCGGTGGGACTGGTGAGGATGACGTT ATGAAACCCCTGGGTGTTGTTGCCGGGATGAACATCGCCGTGGCGGCAAG AGGGCGGCCTGCTGCTGTAGATGGCCACACACCCATCGGCAGATGGTTTT GCGTCGCCTTGTGTGCGTCGCGAGGGAAACATTATCATCAACATGCACCT CCCACGTGTTCCCCGAACACCAAAGTACGTCGGGTACCTTTGGCGGGGAG ATGTGTGTGCAGGGCGGTCATCTTCACCTTCGTACTGCCGTTTTGTCTAC GGTAGCTGAGCAAGCAGACATTGAATACGCAAGCAGGTATCCATCGGGTG TTTGGGATGTTGGCGTATATTGACGAGCACCCTGATGATGTCGGCCCCAA AACAAATATCGATTTCATCCCGAATGATGGGCACCGTCCGGCCCGGAGAC GACGCTGGCCACCTTCATAGTTATGTTTTCAAATCCCGGAGCTCCACTCC AAGGATGATTTCTCCTGCACGGGCGTTGTACAATGATCTTTCTTGCGTCC AGGCGGGAGTGAATGGAGTCAAGGCGAATATTCCTTGCCAGACGGCGCAA GACAGGATAGAGATGTCATGGAATGGCTTGCTGACGAGGTGGCGAACTTC GAGCCGCAAGACCACCACGCGACGAAGACGACTCCCGAGGAACAGGTATC GAGAGAGTTCGTCAAATCTCGGTGTTAGTGTGGCTCGGCTTCCTAGCGTT GTTGAGTCAGTCCCGTGTCAGCATGCTGGTCGCTTCGAGGATGACCAAAC CGGATGCATGTTTTTTTCCGGCGACCTTGCCCTTGCCATGCTTTCGTTGT GCCCCTGGTCTCTCAAGGCTGGGAGACGGCTGGGGAAGAAGCACCTCCAC ACGCTGCTGCTGGCGGTGGGGAAGGGTTGCCTTGAAGGCGCGAAAAGCGT CGAAGAAAAGGTAAGCGTTTGTTTGTGGGAGAACAACGCCGTGTCTCGTA TTGTTTGTTTTGTTTTTCTTGCCCGGCGTGATCTTCGTGGCCGCCACGTT TCATGCTCGCCATTGAAGGGCATCATGGGCGGAGGTCTTGCCCTCGGCCG GTGGCCTGCACTCCTTGTCGAGCCCGGCCTTATGGGAAGCTCAGCTCGCA GACCACTCCATGGCACACGGGGGTTGTATGTGGACGGCGGCTCGACTCAT GGTGCTTCCTTGTTGTGCTTGAGACGAGCCACTCCCAATTCCGAAGCACG CACTTTTAGGTCGAAACCTACAACCTCGCTCTTGTTCTGGTGGTATCTTG GGGAGCACTTGAACAGCAATGCAGCACAACTGACCTAACCCATGGCGGAT TTCTAGGTTGAGCTTTTGGTCCGGGCCGTCCTCCCTGAGGACGAGGGAAA CGCCGTTTCGACGCCTCAAGTTCTCATGGCGCACGCCACGAGCTCCACCG ACAGCGTGTTGAAGCCGACGGATTCGGCAGCAAGTCTCCTCGTCGGTCGC GGCAGTGTAGAAAGTGACGCCAGCAGCGTGGCAGCGTTGAGGGGGGAGAT ACAATCCTTGCGGGACTCTCTGGAAGATTCGAATGCGAAACAATCCAAGC TTGAAAACGAGGTGAGCGCTTCATGGCTGATGTTGGCGCAGAAAAAAGGT TTCGAGGTGGCCTACACAGCAGTCCATTCGTCGCTTTGGGAGACTCGCCT GCCTCACGACCCTAACGTTGATGCATGTACGACGCATGTTGTGACGTTTG GTTTCGCAGGTGACCACCCTAAAGAAGCAGCAGGGGAAGAGCCCGCCGGA CTCTGATGGATTGGTGGCCATCGGTACGTACCGCTGGAGATACGTATGTA CCACTGTTTTGCCCCTGGCGTGTAGTACTTCACCCGTTCTAGATAGCAGC GAAATGCTTCATAAATGCAGTGTGTACGAATTCATTATTATCCCGGAGAC CGAGACTCTGGTGCACGGTGCCTGCTGCAGACTCTTCCGCGGTGACGACC GATTCTACTCTCGTCATGCTGAGGCAACCTCAGTGTGGTCCAGAGAATAA CCCTGGCTCTGCAGCCCACTAAAGAGTGCGTGCTTCAGACCCACAAATAT TTCCCTGCACTTACCCTCCTCTATCTCATTCCACGGCAATCGATACAGGT GGAGGGCTAGCTCTCCAACAGCGGGTAATTGTCACCAAGAAACCGGAAGA CTTCCTGGAGGAGTCTCAACGCGAAGGTAAGGGATTGGGGTTGACCATGC CTCCGCATCGTTTCGTGTCGGCAGCGGTCGATGCAGTTCCGTTTCGTCTG TAAGTTACGTCCAGTTCGTCTCTGAGGCTTTTTCGTTTCGTCTTTTGATG CCTCGTGCTTCTCCCCTTGTTCCCCGAAGTTGTAGGAACTACGACAGCAG TACGTAGAGCGTCGAAGGCGTTTGATGATTCCTGTTCAACAGCCTCCTAC TCTTTTGAAGTTCTTCGCGCGACCCTCTCTAGCCCTGCACCATTTGCAGT TGCGGTATGTCCGAGGAGGCGGGCCATGGTGCGTTTTCTCTGTCTCATGC GGAAAATGACACTCACGTCAAAAGAAACTGATCATAGTGTTTGTGTACCT GCTGCGTTCAACGATCCTCTGGTCTTCCGTATGGGGGCTCGCTCGCGCTA GCGGTGGCCGAGGATCGGCAAGTATCTCTGCGCGAGTTTATGGAGTACAA GGAACTGCAGGACGAAAAAAATCGCGGGATGGAATACAGGATCGAAGATC ATGAAGTGCAAATTAACAGGAAACAAGACCGAAAACGT
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8625:45..4282+

>mRNA_E_fasciculatus_S2_contig8625.16749.1 ID=mRNA_E_fasciculatus_S2_contig8625.16749.1|Name=mRNA_E_fasciculatus_S2_contig8625.16749.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1614bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8625:45..4282+ (Ectocarpus fasciculatus EfasUO2)
GGCGGGCCTGAACATGGGGATCTTGACTCGTGGAGAGCAAGAATAAAGCC
GCAGCAGCAGCAGACACCGGAGCACGATAGGGCAAAAGAAGAAGCCGCTC
CTGTGCAGCACAGCCCCCCATCACCACAAGACACGGAAGCGGCGGAAACA
GATATCGTCCACCCTCGACCCTCTTCCCCAGTGATGGAGGAGGAAGACCC
GGATTACTCATTTGGGGAGCAAGTCGCTTCCTTTGCGGGCTTGGCAGCGC
TTGCTAGAGGAGATCGCGAGGCTCTGGACGAGATCAAAGAGCTCATCAAA
GCACCGCCCATCAGAGCACCACCCGCTGGTAGCGTTTCTCCGGCCTCAGA
GCCGATCGACAAAGAAAAGCTCGAGGACCTCAACAGGCTGGCGGAAATGG
TTACGGGTCTAGGCGATATTTATTCCAGCCACATGGAGGATCAGGGAATG
CAGGAGAGGGAGCAGGGTTTGTCGCCGGCGCACAAGGCGTACTTCAACGC
CGTCCGGGATGGCGTTAGTAACGCATATCTCGCTGCCAGCGTCGTCGGCA
GCAACTTGGTTACCACGAGCAAGACCGGTGGGATAGGCACGGCAGGAAAG
GCCCTGAAATTGCTGTCTGCCGCGATTCCTATGGTTGGAGGGCTAGGAGC
GATCGCAGCCGCGGCTTTGAAGACGGGAGACCGCTACCTCCAAACTCGGC
GAGTCGTGAAGATCGCCGACATCGCGAGGGACCCGGTTGAGTGCTGTTCG
CTGGCAAGGAGATTGGCGTTGCGACTCGCCGACGGCCTTGCGGTTGGCGC
TACCTCCATGGCCGACACGTTAGCGGGCACGATCGGTGGGACTGGCGGGA
GTGAATGGAGTCAAGGCGAATATTCCTTGCCAGACGGCGCAAGACAGGAT
AGAGATGTCATGGAATGGCTTGCTGACGAGGTGGCGAACTTCGAGCCGCA
AGACCACCACGCGACGAAGACGACTCCCGAGGAACAGGCTGGGAGACGGC
TGGGGAAGAAGCACCTCCACACGCTGCTGCTGGCGGTGGGGAAGGGTTGC
CTTGAAGGCGCGAAAAGCGTCGAAGAAAAGGTTGAGCTTTTGGTCCGGGC
CGTCCTCCCTGAGGACGAGGGAAACGCCGTTTCGACGCCTCAAGTTCTCA
TGGCGCACGCCACGAGCTCCACCGACAGCGTGTTGAAGCCGACGGATTCG
GCAGCAAGTCTCCTCGTCGGTCGCGGCAGTGTAGAAAGTGACGCCAGCAG
CGTGGCAGCGTTGAGGGGGGAGATACAATCCTTGCGGGACTCTCTGGAAG
ATTCGAATGCGAAACAATCCAAGCTTGAAAACGAGGTGACCACCCTAAAG
AAGCAGCAGGGGAAGAGCCCGCCGGACTCTGATGGATTGGTGGCCATCGG
TGGAGGGCTAGCTCTCCAACAGCGGGTAATTGTCACCAAGAAACCGGAAG
ACTTCCTGGAGGAGTCTCAACGCGAAGCGGTGGCCGAGGATCGGCAAGTA
TCTCTGCGCGAGTTTATGGAGTACAAGGAACTGCAGGACGAAAAAAATCG
CGGGATGGAATACAGGATCGAAGATCATGAAGTGCAAATTAACAGGAAAC
AAGACCGAAAACGT
back to top