mRNA_E_fasciculatus_S2_contig8624.16748.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8624.16748.1
Unique NamemRNA_E_fasciculatus_S2_contig8624.16748.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8624.16748.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI52_ECTSI)

HSP 1 Score: 175 bits (443), Expect = 7.820e-53
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 3
Query:  294 AHHRPEAIAAVDDIRRLREAMQHVSEMEIELGRLGDKVSGRSIELKSAIKKRLSSPTMLELLTRLEIKDQPVWGLTQEERELVKVAREKVNSC 572
            AHHRPEAIAAVDDIRRLREAMQHVSEMEIELGRLGDKVSGRSIELKSAIKKRLSSPTMLELLTRL+IKDQPVWGLTQEERELVKVAREKVNSC
Sbjct:   64 AHHRPEAIAAVDDIRRLREAMQHVSEMEIELGRLGDKVSGRSIELKSAIKKRLSSPTMLELLTRLKIKDQPVWGLTQEERELVKVAREKVNSC 156          
BLAST of mRNA_E_fasciculatus_S2_contig8624.16748.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHU4_9STRA)

HSP 1 Score: 103 bits (256), Expect = 1.160e-24
Identity = 52/92 (56.52%), Postives = 71/92 (77.17%), Query Frame = 3
Query:  297 HHRPEAIAAVDDIRRLREAMQHVSEMEIELGRLGDKVSGRSIELKSAIKKRLSSPTMLELLTRLEIKDQPVWGLTQEERELVKVAREKVNSC 572
            HHRPEA+A+ +DI RL+  M+ V  ME EL +  + ++ R+IE+K  +KK LSSP M+ELL RLEI+ +PVWGLTQ+ER+LV+ AR KVN+C
Sbjct:   61 HHRPEAVASQEDIERLKAVMEDVMGMESELAK-ANSLNARTIEIKGNLKKTLSSPAMMELLNRLEIQSEPVWGLTQKERDLVRSARRKVNTC 151          
BLAST of mRNA_E_fasciculatus_S2_contig8624.16748.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z526_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 6.960e-20
Identity = 48/92 (52.17%), Postives = 62/92 (67.39%), Query Frame = 3
Query:  297 HHRPEAIAAVDDIRRLREAMQHVSEMEIELGRLGDKVSGRSIELKSAIKKRLSSPTMLELLTRLEIKDQPVWGLTQEERELVKVAREKVNSC 572
            HHRPEA+AA++DI RL  A+                ++  +IE+KS +KK LSSP M+ELL RLEI  +PVWGLTQ ERE+V+ AR KVN+C
Sbjct:   35 HHRPEAVAALEDIARL-SAIXXXXXXXXXXXXXXXTLNAHTIEIKSTLKKTLSSPAMIELLNRLEINAEPVWGLTQAEREMVRTARRKVNTC 125          
BLAST of mRNA_E_fasciculatus_S2_contig8624.16748.1 vs.
Match: Uncharacterized (protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CV18_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 2.800e-18
Identity = 49/91 (53.85%), Postives = 64/91 (70.33%), Query Frame = 3
Query:  300 HRPEAIAAVDDIRRLREAMQHVSEMEIELGRLGDKVSGRSIELKSAIKKRLSSPTMLELLTRLEIKDQPVWGLTQEERELVKVAREKVNSC 572
            HRPEA+A   DI+ LR  M+ V E+E++L R  D++  + I +KSAIKK+ S   M ELL RLE+K QPVWGL+  ER+LVK AR + NSC
Sbjct:   74 HRPEAVAHAADIKSLRMLMEEVEELEVQL-RSADELP-KQISIKSAIKKKASGRDMTELLKRLELKGQPVWGLSVSERDLVKEARRRFNSC 162          
BLAST of mRNA_E_fasciculatus_S2_contig8624.16748.1 vs.
Match: Hypothetical (protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IEF3_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.030e-16
Identity = 45/93 (48.39%), Postives = 63/93 (67.74%), Query Frame = 3
Query:  294 AHHRPEAIAAVDDIRRLREAMQHVSEMEIELGRLGDKVSGRSIELKSAIKKRLSSPTMLELLTRLEIKDQPVWGLTQEERELVKVAREKVNSC 572
            + HRPE  A  +D+ +L   M  V  +E  L +   +V+ RSIEL+ +IKK ++SP +++ L RLEI+ +PVWGLT EER+LVK AR KVN C
Sbjct:   65 SEHRPEMQAIAEDVTKLSSIMGEVETLE-HLLQSETEVTSRSIELRGSIKKLMTSPDVMDCLNRLEIQGEPVWGLTVEERDLVKFARSKVNEC 156          
BLAST of mRNA_E_fasciculatus_S2_contig8624.16748.1 vs.
Match: Hypothetical (protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K9H6_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 2.030e-16
Identity = 44/94 (46.81%), Postives = 62/94 (65.96%), Query Frame = 3
Query:  303 RPEAIAAVDDIRRLREAMQHVSEMEIELGRLGDK----VSGRSIELKSAIKKRLSSPTMLELLTRLEIKDQPVWGLTQEERELVKVAREKVNSC 572
            RPE +A   D+ +++  MQ V  +E  L R  ++    ++GRSIEL+S+IKK + +P   E L RLEI+  PVWGL+ EER+L+  AREKVN C
Sbjct:   63 RPEMLALAADVTKIQAVMQEVETLESLLDREKEESKGEITGRSIELRSSIKKLMVAPEFTECLNRLEIQGSPVWGLSSEERDLIHAAREKVNEC 156          
BLAST of mRNA_E_fasciculatus_S2_contig8624.16748.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R7N6_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 4.940e-16
Identity = 47/97 (48.45%), Postives = 65/97 (67.01%), Query Frame = 3
Query:  294 AHHRPEAIAAVDDIRRLREAMQHVSEMEIELGRL----GDKVSGRSIELKSAIKKRLSSPTMLELLTRLEIKDQPVWGLTQEERELVKVAREKVNSC 572
            AHH PEAI  + DIR L + M  V+ +E +L       G  V+ +SIELK+AIK+++SS  M +LL RLEI   P WGL+ +ER+LV +AR+K N+C
Sbjct:   85 AHH-PEAIVELQDIRLLEQVMSEVATLEDQLATSMATHGSSVNEQSIELKAAIKRKMSSKAMAQLLDRLEINGTPRWGLSTKERKLVNLARDKFNAC 180          
BLAST of mRNA_E_fasciculatus_S2_contig8624.16748.1 vs.
Match: Uncharacterized (protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KRA7_FISSO)

HSP 1 Score: 79.0 bits (193), Expect = 3.150e-15
Identity = 44/91 (48.35%), Postives = 63/91 (69.23%), Query Frame = 3
Query:  303 RPEAIAAVDDIRRLREAMQHVSEMEIEL-GRLGDKVSGRSIELKSAIKKRLSSPTMLELLTRLEIKDQPVWGLTQEERELVKVAREKVNSC 572
            R   IA   D+ ++ + M  V  +E +L    G  V+ +SIELKSAIKK ++ P++LE L RLE++ QPVWGL+ EERE++ +AREKVN+C
Sbjct:   69 RGRMIALSQDVEKIEQVMTAVESLESQLLDNAG--VNSKSIELKSAIKKLMTDPSVLESLNRLELEGQPVWGLSTEEREMIIMAREKVNAC 157          
BLAST of mRNA_E_fasciculatus_S2_contig8624.16748.1 vs.
Match: Hypothetical (protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A6T8IU12_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 4.260e-15
Identity = 40/95 (42.11%), Postives = 63/95 (66.32%), Query Frame = 3
Query:  303 RPEAIAAVDDIRRLREAMQHVSEME----IELGRLGDKV-SGRSIELKSAIKKRLSSPTMLELLTRLEIKDQPVWGLTQEERELVKVAREKVNSC 572
            RPE +A   D++ +   M  V ++E     E+   GD   SG+SIEL+ +IKK ++ P ++E L RLE++ +PVWGL+  ER+L+++AR+KVN C
Sbjct:    7 RPEMLALAADVQHIVSVMNEVDKLEGILEREIEECGDSAPSGKSIELRGSIKKVMADPKVIECLDRLEVQGEPVWGLSSSERDLIQMARQKVNDC 101          
BLAST of mRNA_E_fasciculatus_S2_contig8624.16748.1 vs.
Match: Hypothetical (protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9H6B1_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 7.440e-15
Identity = 41/97 (42.27%), Postives = 64/97 (65.98%), Query Frame = 3
Query:  294 AHHRPEAIAAVDDIRRLREAMQHVSEMEIELGRLGDK----VSGRSIELKSAIKKRLSSPTMLELLTRLEIKDQPVWGLTQEERELVKVAREKVNSC 572
            + HRPE +A   D++ +   M  V  +E  L    ++    ++ RSIEL+ +IKK ++SP ++E L RLEI+ +PVWGL+ +ER+LVK+AR K+N C
Sbjct:   69 SEHRPEMLALAADVQTISSIMVEVEMLENLLQSETEENQGAITSRSIELRGSIKKLMTSPDVMECLNRLEIQGEPVWGLSSDERDLVKLARSKINEC 165          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8624.16748.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
Uncharacterized7.820e-5398.92protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI52... [more]
Uncharacterized1.160e-2456.52protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Uncharacterized6.960e-2052.17protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Uncharacterized2.800e-1853.85protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID... [more]
Hypothetical1.030e-1648.39protein n=1 Tax=Helicotheca tamesis TaxID=374047 R... [more]
Hypothetical2.030e-1646.81protein n=1 Tax=Odontella aurita TaxID=265563 RepI... [more]
Hypothetical4.940e-1648.45protein n=1 Tax=Rhizochromulina marina TaxID=10348... [more]
Uncharacterized3.150e-1548.35protein n=2 Tax=Fistulifera solaris TaxID=1519565 ... [more]
Hypothetical4.260e-1542.11protein n=1 Tax=Proboscia inermis TaxID=420281 Rep... [more]
Hypothetical7.440e-1542.27protein n=1 Tax=Ditylum brightwellii TaxID=49249 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8624contigE_fasciculatus_S2_contig8624:228..1488 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score142.9
Seed ortholog evalue6e-32
Seed eggNOG ortholog2880.D7FI52
Model size575
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs2E2F6@1,2S9NX@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-10_003570.1
Cds size222
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842520.590669-UTR-E_fasciculatus_S2_contig8624:227..5801696842520.590669-UTR-E_fasciculatus_S2_contig8624:227..580Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8624 228..580 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842520.6092598-CDS-E_fasciculatus_S2_contig8624:580..7001696842520.6092598-CDS-E_fasciculatus_S2_contig8624:580..700Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8624 581..700 +
1696842520.6269207-CDS-E_fasciculatus_S2_contig8624:1386..14881696842520.6269207-CDS-E_fasciculatus_S2_contig8624:1386..1488Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8624 1387..1488 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8624.16748.1prot_E_fasciculatus_S2_contig8624.16748.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8624 581..1488 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8624.16748.1

>prot_E_fasciculatus_S2_contig8624.16748.1 ID=prot_E_fasciculatus_S2_contig8624.16748.1|Name=mRNA_E_fasciculatus_S2_contig8624.16748.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=74bp
MQHVSEMEIELGRLGDKVSGRSIELKSAIKKRLSSPTMLELLTRLEIKDQ
PVWGLTQEERELVKVAREKVNSC*
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mRNA from alignment at E_fasciculatus_S2_contig8624:228..1488+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8624.16748.1 ID=mRNA_E_fasciculatus_S2_contig8624.16748.1|Name=mRNA_E_fasciculatus_S2_contig8624.16748.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1261bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8624:228..1488+ (Ectocarpus fasciculatus EfasUO2)
TATAAAAGTCTTCCGGCGAGCAAGCCTAGAATCATTCATAGCGCTTGGGT AGAGTCCACTTGCAAAGTTGTGCCTTTCTCTGTAGTCTCCCTTGTTGGGA AGATTTACGGTTTCTTTACGGAGACTGCTGTGCTTCCGACCAAGATGCCC TGACTAACAATATACATACAGTGCCACCATGTTTTTTTGTCCCCTCTTCC ACGGCGGGTGTGAAAACACTCACGAGACGGCAACAATTTTACTCTTTTTC CCGGCTACCTGTGCGGTTTTTGGCGGCGGTTTGGCTGCACAGGGCGCACC ACCGGCCAGAGGCCATCGCCGCCGTCGACGACATCCGGCGCCTTCGCGAG GCCATGCAGCACGTGAGCGAGATGGAGATCGAGCTCGGCCGCCTGGGAGA CAAGGTGTCGGGCAGGTCCATCGAGCTCAAGAGCGCTATCAAGAAGCGAC TGTCGTCGCCCACCATGCTTGAGGTACGCCTGGGGAGGGGGTGCGTTATT TGTTTGGTGCGGCGGGGGCTGCGGCTTGCAGCAGCGGCAGCACCAACCTA CAGCAGCGTTAGTGCTGCAGCGGTAGAATGACCGCTCCCTCAGAGAGACA GAGACAGACAGAGACAGACAGAGACAGACAGACAGACAGACGGACGGACC CCCTTCGTGCCCACCCCGAAAGTTGGCAAGGCGGATGCAGTGTGTGTGGT ACGGCGACAGCGCCGCTTACAGTAGGGAAGCATCACGCAACAACCGCAGC GGTTTAAACAGCAGCAGGCCGGGCTGTGGCTGCACGCGGTATTACTACTG TAGAGACGCTAGCACGGGTGTGCAGCGGCGGAAGCGTAAGATGGCAACAG CAATACAGCTGCAGCGAGCAGCAGCAGCTGCACCTGACGAAGCTATACGC ACGCACAAAGAGAGGGCCGTTTTTCGGGTTGTGGTGCAAGAAGGGGTGTG GGAGGTTCAGGGAGGTGGTTTGTGTGTCTAGCAGTTGTGTTCGAATGGGG ATGCCTTTGAGCATGCATGCATTGATCTGAAATCGTTCGTGGTTTTGGTG CATGACCGCCCCCCCCCGCTACCACACCCAGACTGTCACGTACTCCTAGC CCTCACCGCCAAGCTTGAACCCCCCCCCGTCCCGCACCACACGGTTCCCT CTACTGCAGTTGCTGACCCGGCTAGAGATCAAGGATCAGCCAGTTTGGGG GCTGACACAGGAGGAACGCGAGCTCGTCAAGGTTGCCCGCGAAAAAGTCA ACAGCTGTTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8624:228..1488+

>mRNA_E_fasciculatus_S2_contig8624.16748.1 ID=mRNA_E_fasciculatus_S2_contig8624.16748.1|Name=mRNA_E_fasciculatus_S2_contig8624.16748.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=222bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8624:228..1488+ (Ectocarpus fasciculatus EfasUO2)
ATGCAGCACGTGAGCGAGATGGAGATCGAGCTCGGCCGCCTGGGAGACAA
GGTGTCGGGCAGGTCCATCGAGCTCAAGAGCGCTATCAAGAAGCGACTGT
CGTCGCCCACCATGCTTGAGTTGCTGACCCGGCTAGAGATCAAGGATCAG
CCAGTTTGGGGGCTGACACAGGAGGAACGCGAGCTCGTCAAGGTTGCCCG
CGAAAAAGTCAACAGCTGTTGA
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