mRNA_E_fasciculatus_S2_contig862.16745.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig862.16745.1 vs.
Match: Eukaryotic (translation initiation factor 2B beta subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHD8_ECTSI) HSP 1 Score: 259 bits (663), Expect = 3.700e-82 Identity = 129/135 (95.56%), Postives = 131/135 (97.04%), Query Frame = 2
Query: 125 GMEQSYRRNMRSVSVDYSHGGGKPTGFDVASTDVRAWLQQWPRVLSQLETLVVGLKRRQVSGPYNCAQFTVELYRNLVGSCKWGTAGQLMDAVREVGKELVAAKPSELAVGNMVRRVLYIIRDEYESALSSGDGS 529
GMEQSYR NMRS+SVDYSHG GKPTGFDVAS DVRAWLQQWPRVLSQLETLVVGLKRRQVSGPYNCAQFTVELYRNLVGSCKWGTAGQLMDAVREVGKELVAAKPSELAVGNMVRRVLYIIRDEYESA S+GDGS
Sbjct: 25 GMEQSYRSNMRSLSVDYSHG-GKPTGFDVASMDVRAWLQQWPRVLSQLETLVVGLKRRQVSGPYNCAQFTVELYRNLVGSCKWGTAGQLMDAVREVGKELVAAKPSELAVGNMVRRVLYIIRDEYESAFSAGDGS 158
BLAST of mRNA_E_fasciculatus_S2_contig862.16745.1 vs.
Match: Eukaryotic (translation initiation factor 2B beta subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBW3_9STRA) HSP 1 Score: 140 bits (352), Expect = 1.260e-36 Identity = 66/103 (64.08%), Postives = 83/103 (80.58%), Query Frame = 2
Query: 203 FDVASTDVRAWLQQWPRVLSQLETLVVGLKRRQVSGPYNCAQFTVELYRNLVGSCKWGTAGQLMDAVREVGKELVAAKPSELAVGNMVRRVLYIIRDEYESAL 511
FD + VR +L+ WP VLSQ+E L V LKRRQVSGPY+CA+ T+EL R VG+CKW TA QLM+ +R VG+EL+AAKPSELAVGN+VRRVL++IR+EY + L
Sbjct: 18 FDPSVVGVRTFLKNWPIVLSQMEKLSVSLKRRQVSGPYHCAKATLELLRYTVGTCKWATAAQLMELIRAVGRELIAAKPSELAVGNVVRRVLFVIREEYTAKL 120
BLAST of mRNA_E_fasciculatus_S2_contig862.16745.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6WSI2_9STRA) HSP 1 Score: 107 bits (268), Expect = 1.420e-25 Identity = 47/98 (47.96%), Postives = 73/98 (74.49%), Query Frame = 2
Query: 224 VRAWLQQWPRVLSQLETLVVGLKRRQVSGPYNCAQFTVELYRNLVGSCKWGTAGQLMDAVREVGKELVAAKPSELAVGNMVRRVLYIIRDEYESALSS 517
++ WL WP++ +QL L+VGLKRRQ++G Y ++ T EL R ++G+ +W A QLMD +R +G+ L+ A P ELA+GN++RRVL+IIR+EY +A+ +
Sbjct: 6 LKQWLAPWPKISAQLSNLLVGLKRRQITGSYETSRKTTELVRAILGTVRWTHARQLMDNIRLLGRVLIKAIPQELAIGNVIRRVLFIIREEYLNAMKT 103
BLAST of mRNA_E_fasciculatus_S2_contig862.16745.1 vs.
Match: Uncharacterized (protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WDK5_GLOUD) HSP 1 Score: 110 bits (274), Expect = 1.790e-25 Identity = 50/104 (48.08%), Postives = 75/104 (72.12%), Query Frame = 2
Query: 209 VASTDVRAWLQQWPRVLSQLETLVVGLKRRQVSGPYNCAQFTVELYRNLVGSCKWGTAGQLMDAVREVGKELVAAKPSELAVGNMVRRVLYIIRDEYESALSSG 520
+A+T+++ WL +WP V +E LV+ LKRRQV+G Y+ A+ T L ++ + +W TAG++M+ VR++G L A ELA+GN+VRRVLYIIR+EY +AL +G
Sbjct: 1 MATTELKEWLAEWPSVRESVEALVLSLKRRQVTGSYDTAKKTTMLLNKVIETVEWSTAGEIMEKVRQLGHMLTKAHSHELAIGNVVRRVLYIIREEYVNALKAG 104
BLAST of mRNA_E_fasciculatus_S2_contig862.16745.1 vs.
Match: Translation (initiation factor eif-2b subunit beta n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TWQ5_9STRA) HSP 1 Score: 108 bits (270), Expect = 6.020e-25 Identity = 47/97 (48.45%), Postives = 71/97 (73.20%), Query Frame = 2
Query: 221 DVRAWLQQWPRVLSQLETLVVGLKRRQVSGPYNCAQFTVELYRNLVGSCKWGTAGQLMDAVREVGKELVAAKPSELAVGNMVRRVLYIIRDEYESAL 511
D+ AWL WP V Q +L+ L+RR+V+G CA+ T+EL + ++G+C+W TA +LM V+ VGK LV A+P +L VGN+VRR+L+IIR+E+++ L
Sbjct: 11 DLDAWLSTWPHVHGQYRSLITSLQRRKVAGSLPCAKMTIELLKAVMGTCRWTTAAELMSVVKRVGKALVDAQPLQLVVGNVVRRILFIIREEHKNKL 107
BLAST of mRNA_E_fasciculatus_S2_contig862.16745.1 vs.
Match: Uncharacterized (protein n=10 Tax=Aphanomyces TaxID=100860 RepID=A0A024U0L0_9STRA) HSP 1 Score: 107 bits (268), Expect = 1.040e-24 Identity = 47/98 (47.96%), Postives = 73/98 (74.49%), Query Frame = 2
Query: 224 VRAWLQQWPRVLSQLETLVVGLKRRQVSGPYNCAQFTVELYRNLVGSCKWGTAGQLMDAVREVGKELVAAKPSELAVGNMVRRVLYIIRDEYESALSS 517
++ WL WP++ +QL L+VGLKRRQ++G Y ++ T EL R ++G+ +W A QLMD +R +G+ L+ A P ELA+GN++RRVL+IIR+EY +A+ +
Sbjct: 6 LKQWLAPWPKISTQLSNLLVGLKRRQITGSYETSRKTTELVRAILGTVRWTHARQLMDNIRLLGRVLIKAIPQELAIGNVIRRVLFIIREEYLNAMKT 103
BLAST of mRNA_E_fasciculatus_S2_contig862.16745.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FND4_PYTOL) HSP 1 Score: 107 bits (266), Expect = 2.360e-24 Identity = 48/103 (46.60%), Postives = 75/103 (72.82%), Query Frame = 2
Query: 209 VASTDVRAWLQQWPRVLSQLETLVVGLKRRQVSGPYNCAQFTVELYRNLVGSCKWGTAGQLMDAVREVGKELVAAKPSELAVGNMVRRVLYIIRDEYESALSS 517
+ +T V+ WL+ WP V + ++ LV+ LKRRQ++G Y+ A+ T+ L+ +++ + KW TA ++MD VR +G L A P ELA+GN+VRRVLYIIR+E+ +AL +
Sbjct: 1 MTTTPVQPWLRDWPSVQANVDDLVLSLKRRQLAGSYDTAKRTIMLFSHMLETVKWSTASEIMDKVRGLGHMLTRAHPHELAIGNVVRRVLYIIREEHANALKT 103
BLAST of mRNA_E_fasciculatus_S2_contig862.16745.1 vs.
Match: Translation (initiation factor eIF-2B beta subunit n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9YTY4_9STRA) HSP 1 Score: 106 bits (265), Expect = 2.870e-24 Identity = 47/98 (47.96%), Postives = 72/98 (73.47%), Query Frame = 2
Query: 224 VRAWLQQWPRVLSQLETLVVGLKRRQVSGPYNCAQFTVELYRNLVGSCKWGTAGQLMDAVREVGKELVAAKPSELAVGNMVRRVLYIIRDEYESALSS 517
++ WL WP+++ Q + LVVGLKRRQ++G Y ++ T EL R ++G+ +W A QLM+ VR +G+ LV A P ELA+GN++RRVL+IIR+EY + + +
Sbjct: 7 LQQWLAPWPKIVEQYKQLVVGLKRRQITGSYETSRKTTELLRAVLGAVRWAHARQLMENVRMLGRVLVKAMPQELAIGNVIRRVLFIIREEYLNGMKA 104
BLAST of mRNA_E_fasciculatus_S2_contig862.16745.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WLN6_9STRA) HSP 1 Score: 103 bits (258), Expect = 2.870e-23 Identity = 46/98 (46.94%), Postives = 72/98 (73.47%), Query Frame = 2
Query: 224 VRAWLQQWPRVLSQLETLVVGLKRRQVSGPYNCAQFTVELYRNLVGSCKWGTAGQLMDAVREVGKELVAAKPSELAVGNMVRRVLYIIRDEYESALSS 517
++ WL WP++ L TL++GLKRRQ++G Y ++ T EL R ++G+ +W A QLM+ VR +G+ L+ A P ELA+GN++RRVL+IIR+EY +A+ +
Sbjct: 6 LKQWLAPWPKINDLLSTLLLGLKRRQITGSYETSRKTTELLRAILGAVRWPHARQLMEHVRLLGRVLIKAIPQELAIGNVIRRVLFIIREEYLNAIKT 103
BLAST of mRNA_E_fasciculatus_S2_contig862.16745.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CCY1_PYTIN) HSP 1 Score: 104 bits (259), Expect = 1.220e-22 Identity = 64/171 (37.43%), Postives = 93/171 (54.39%), Query Frame = 2
Query: 5 LKQLSLPAGTQPPVRERRCAGTVQLRNSGSKSLAVC*GAGGMEQSYRRNMRSVSVDYSHGGGKPTGFDVASTDVRAWLQQWPRVLSQLETLVVGLKRRQVSGPYNCAQFTVELYRNLVGSCKWGTAGQLMDAVREVGKELVAAKPSELAVGNMVRRVLYIIRDEYESALSS 517
+K++S AG ++ R TVQ S SL GM + +S D +H ST + WL +WP V + ++ LV+ LKRRQ++G Y+ A+ T L ++ S W TAG++ + VR +G L A P ELA+GN+VRRVLYIIR+E+ +AL S
Sbjct: 655 MKRISQEAGGGAKIKVREVT-TVQ-----SASLP------GMLSLLDQQRHHLSEDDAHLAIMTVVSPAPSTSLDQWLAEWPSVRASVDDLVLSLKRRQLTGSYDTAKRTTMLLSEMLNSVDWKTAGEITEKVRSLGDMLTKAHPQELAIGNVVRRVLYIIREEHANALKS 813 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig862.16745.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig862.16745.1 >prot_E_fasciculatus_S2_contig862.16745.1 ID=prot_E_fasciculatus_S2_contig862.16745.1|Name=mRNA_E_fasciculatus_S2_contig862.16745.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=182bp APEATLPARWHPTARTRTAVRRDCTAEEFWQQVSGCVLRSRRDGAVLPQEback to top mRNA from alignment at E_fasciculatus_S2_contig862:21131..26184+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig862.16745.1 ID=mRNA_E_fasciculatus_S2_contig862.16745.1|Name=mRNA_E_fasciculatus_S2_contig862.16745.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5054bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig862:21131..26184+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig862:21131..26184+ >mRNA_E_fasciculatus_S2_contig862.16745.1 ID=mRNA_E_fasciculatus_S2_contig862.16745.1|Name=mRNA_E_fasciculatus_S2_contig862.16745.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=546bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig862:21131..26184+ (Ectocarpus fasciculatus EfasUO2)back to top |