mRNA_E_fasciculatus_S2_contig8605.16732.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8605.16732.1
Unique NamemRNA_E_fasciculatus_S2_contig8605.16732.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8605.16732.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8605contigE_fasciculatus_S2_contig8605:107..1538 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size333
Hectar predicted targeting categorysignal peptide
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_001750.1
Cds size333
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842518.995096-CDS-E_fasciculatus_S2_contig8605:106..1401696842518.995096-CDS-E_fasciculatus_S2_contig8605:106..140Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8605 107..140 -
1696842519.0113256-CDS-E_fasciculatus_S2_contig8605:305..3821696842519.0113256-CDS-E_fasciculatus_S2_contig8605:305..382Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8605 306..382 -
1696842519.0209444-CDS-E_fasciculatus_S2_contig8605:532..6191696842519.0209444-CDS-E_fasciculatus_S2_contig8605:532..619Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8605 533..619 -
1696842519.0312886-CDS-E_fasciculatus_S2_contig8605:1403..15381696842519.0312886-CDS-E_fasciculatus_S2_contig8605:1403..1538Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8605 1404..1538 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8605.16732.1prot_E_fasciculatus_S2_contig8605.16732.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8605 107..1538 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8605.16732.1

>prot_E_fasciculatus_S2_contig8605.16732.1 ID=prot_E_fasciculatus_S2_contig8605.16732.1|Name=mRNA_E_fasciculatus_S2_contig8605.16732.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=111bp
PQLAVPGAVIVSLVLFVVGAAILECRRFVMGAGRRRRQVGAMELEKEVTA
NEGHQRQRRQVRYLATAVSTTQLQVAVTTWALTRKRREGESLRTAGDALR
VTLSAAEGRAR
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mRNA from alignment at E_fasciculatus_S2_contig8605:107..1538-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8605.16732.1 ID=mRNA_E_fasciculatus_S2_contig8605.16732.1|Name=mRNA_E_fasciculatus_S2_contig8605.16732.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1432bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8605:107..1538- (Ectocarpus fasciculatus EfasUO2)
CCGCAACTGGCCGTCCCGGGCGCGGTCATCGTCTCCCTGGTGCTGTTCGT
TGTCGGAGCGGCAATTTTGGAATGTCGGCGGTTCGTCATGGGGGCGGGTC
GTCGGCGTCGGCAGGTCGGGGCGATGGAGCTGGAGGTAATGTCCTACTGT
ATCACATTTCCCGGCACCTTTTCTCCACCAGTGAAACGGGTAGTGCTTGC
AACTACCGTCACCCAGCACCTTTCCTCGCTCAATTGAGGGCGAAGAGCAA
GAAGAACGTCTGCTTAGCTCCTCTTTTGCTCTCTCTCAATCACAACAACA
CATGTTGTTTTTTCAAGCGCAGAGAATGCGTCCAATGATCGCGGTAAGCT
AGGCTTCTTGGAATCGATCCGTTTGAGGGTGTGGGGTGGCCTGAGTGGGC
AAAAGCTCGCACGGTCATTCTCATCATGTCTCCACCCCCCATCCCTCCCC
TCCTTCCTCCCGCCTCCCTCCCGCCTCCCTCCCGCCTCCCTCCCGCCTCC
CTCCCGCCAACGGATGGTATTTACTTTTAGCGCTCGAAGGTCAGCATCCA
CATACATACGTACACACGTGCTAGCAAACCTTTTGCAGGGGCTGGGCCAC
GGTGACGCGCCTTCACATTCGAAAGGATCCCCTTGAAGTCGCGAATTTCA
ATTTAGCTGCCTCAAGACTAGCCTTTCCGTAGACACGGCATGCAGAAGTC
GAATGTTTAGCGCTACGGTTGCCATCCGTCTGCAGAAGAAAGAAAAATAC
CGGTATAGAAAAATTATTCGCCTTGGTTTTGCTCGACCCCCCAGCAAGGT
CAATTCCTTGCACCGAATAAAACAACAGCAACCAGCTGGCCGCAACACTG
CACAGCCATGACTTTGCTCCTTCGAACCAAACACCAACCTCCGTGACGCA
TGCCCTGGTCGTGTTACAGAAGGAGGTCACCGCGAACGAGGGCCACCAGC
GGCAGAGGAGGCAAGTTCGATACCTGGCGACGGCGGTCTCGACCACGCAG
CTGCAGGTGGGTCACGAACGCGGTAGACCTGCACAAAGTCATTGTCATCG
TCATCGCTGGTGTGTCTGGTTCCACTGCCAGTGACTCTGCTTCCGTCACG
TGTAACGATCATGCCGAACCAAACTTGTCTCTGGTATCTGCCTGCCTCAT
TGGCAGGTAGCGGTGACGACGTGGGCGCTAACGCGGAAACGGCGTGAGGG
AGAATCTCTTCGAACGGCGGGGGATGCCCTGAGGTGAGCAAAGCATGTGG
GCGGAGAGGGAGGTATCCAGGAGGGCTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTCGTTGTTCTGGTCTGATACG
ATTGCACGTACCTTTCTCTCGTTCGTCCGTCGGCTTCTTGTTCTCTAGGG
TCACCCTCTCCGCAGCAGAGGGCCGAGCCCGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8605:107..1538-

>mRNA_E_fasciculatus_S2_contig8605.16732.1 ID=mRNA_E_fasciculatus_S2_contig8605.16732.1|Name=mRNA_E_fasciculatus_S2_contig8605.16732.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=333bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8605:107..1538- (Ectocarpus fasciculatus EfasUO2)
CCGCAACTGGCCGTCCCGGGCGCGGTCATCGTCTCCCTGGTGCTGTTCGT
TGTCGGAGCGGCAATTTTGGAATGTCGGCGGTTCGTCATGGGGGCGGGTC
GTCGGCGTCGGCAGGTCGGGGCGATGGAGCTGGAGAAGGAGGTCACCGCG
AACGAGGGCCACCAGCGGCAGAGGAGGCAAGTTCGATACCTGGCGACGGC
GGTCTCGACCACGCAGCTGCAGGTAGCGGTGACGACGTGGGCGCTAACGC
GGAAACGGCGTGAGGGAGAATCTCTTCGAACGGCGGGGGATGCCCTGAGG
GTCACCCTCTCCGCAGCAGAGGGCCGAGCCCGG
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