mRNA_E_fasciculatus_S2_contig8604.16731.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E_fasciculatus_S2_contig8604.16731.1
Unique Name	mRNA_E_fasciculatus_S2_contig8604.16731.1
Type	mRNA
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig8604.16731.1 vs.
Match: Avl9 (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT00_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 7.920e-23
Identity = 68/86 (79.07%), Postives = 69/86 (80.23%), Query Frame = 2

Query:    8 TEWRIRFANGDHFAGTVLEGVPHGTGTYKYSNGDIFTGGGLRXXXXXXXXXXXXXXXXEW---LRDHISYQGKGALTLADGTTHDF 256
            TEWRIRFANGDHFAGTVLEGVPHGTGTYKY            XXXXXXXXXXXXXXXX     +RDHISYQGKGALTLADGTTHDF
Sbjct:  927 TEWRIRFANGDHFAGTVLEGVPHGTGTYKYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRDHISYQGKGALTLADGTTHDF 1012

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BLAST of mRNA_E_fasciculatus_S2_contig8604.16731.1 vs.
Match: Avl9 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU41_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 3.580e-22
Identity = 67/86 (77.91%), Postives = 69/86 (80.23%), Query Frame = 2

Query:    8 TEWRIRFANGDHFAGTVLEGVPHGTGTYKYSNGDIFTGGGLRXXXXXXXXXXXXXXXXEW---LRDHISYQGKGALTLADGTTHDF 256
            TEWRIRFANGDH+AGTVLEGVPHGTGTYKY           RXXXXXXXXXXXXXXXX     +RDHISY GKGALTLADGTTHDF
Sbjct:  521 TEWRIRFANGDHYAGTVLEGVPHGTGTYKYXXXXXXXXXXDRXXXXXXXXXXXXXXXXXXXXXVRDHISYHGKGALTLADGTTHDF 606

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BLAST of mRNA_E_fasciculatus_S2_contig8604.16731.1 vs.
Match: Uncharacterized (protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397A264_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 4.870e-12
Identity = 42/82 (51.22%), Postives = 56/82 (68.29%), Query Frame = 2

Query:   11 EWRIRFANGDHFAGTVLEGVPHGTGTYKYSNGDIFTGGGLRXXXXXXXXXXXXXXXXEWLRDHISYQGKGALTLADGTTHDF 256
            +W I+FA+G  + G  + G PHG G  KY+NGD+++G   R   XXXXXXXXXXXXX    +H+S  GKG LT+A+GT H +
Sbjct:   29 DWHIQFASGSSYNGECVGGKPHGHGVCKYTNGDVYSGEWARSGWXXXXXXXXXXXXXXXTANHVSLNGKGTLTMANGTVHAY 110

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BLAST of mRNA_E_fasciculatus_S2_contig8604.16731.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VK77_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.780e-10
Identity = 38/82 (46.34%), Postives = 50/82 (60.98%), Query Frame = 2

Query:   11 EWRIRFANGDHFAGTVLEGVPHGTGTYKYSNGDIFTGGGLRXXXXXXXXXXXXXXXXEWLRDHISYQGKGALTLADGTTHDF 256
            +W I+FA+G  + G  + G PHG G  KY+NGD  +G       XXXXXXXX     EW  +H+S  GKG LT+A+GT H +
Sbjct:  111 DWHIQFASGSSYNGECVGGKPHGHGVCKYTNGDARSG------WXXXXXXXXHVFQGEWTANHVSLNGKGTLTMANGTVHAY 186

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig8604.16731.1 vs.
Match: Uncharacterized (protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VE59_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 5.910e-10
Identity = 38/82 (46.34%), Postives = 50/82 (60.98%), Query Frame = 2

Query:   11 EWRIRFANGDHFAGTVLEGVPHGTGTYKYSNGDIFTGGGLRXXXXXXXXXXXXXXXXEWLRDHISYQGKGALTLADGTTHDF 256
            +W I+FA+G  + G  + G PHG G  KY+NGD  +G       XXXXXXXX     EW  +H+S  GKG LT+A+GT H +
Sbjct:  235 DWHIQFASGSSYNGECVGGKPHGHGVCKYTNGDARSG------WXXXXXXXXHVFQGEWTANHVSLNGKGTLTMANGTVHAY 310

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig8604.16731.1 vs.
Match: Uncharacterized (protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397BZG6_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 6.430e-10
Identity = 38/82 (46.34%), Postives = 50/82 (60.98%), Query Frame = 2

Query:   11 EWRIRFANGDHFAGTVLEGVPHGTGTYKYSNGDIFTGGGLRXXXXXXXXXXXXXXXXEWLRDHISYQGKGALTLADGTTHDF 256
            +W I+FA+G  + G  + G PHG G  KY+NGD  +G       XXXXXXXX     EW  +H+S  GKG LT+A+GT H +
Sbjct:  258 DWHIQFASGSSYNGECVGGKPHGHGVCKYTNGDARSG------WXXXXXXXXHVFQGEWTANHVSLNGKGTLTMANGTVHAY 333

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig8604.16731.1 vs.
Match: UDENN (domain-containing protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397EBP9_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 7.530e-10
Identity = 38/82 (46.34%), Postives = 50/82 (60.98%), Query Frame = 2

Query:   11 EWRIRFANGDHFAGTVLEGVPHGTGTYKYSNGDIFTGGGLRXXXXXXXXXXXXXXXXEWLRDHISYQGKGALTLADGTTHDF 256
            +W I+FA+G  + G  + G PHG G  KY+NGD  +G       XXXXXXXX     EW  +H+S  GKG LT+A+GT H +
Sbjct:  474 DWHIQFASGSSYNGECVGGKPHGHGVCKYTNGDARSG------WXXXXXXXXHVFQGEWTANHVSLNGKGTLTMANGTVHAY 549

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig8604.16731.1 vs.
Match: UDENN (domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U3L8_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 5.950e-5
Identity = 42/85 (49.41%), Postives = 52/85 (61.18%), Query Frame = 2

Query:   11 EWRIRFANGDHFAGTVLEGVPHGTGTYKYSNGDIFTGGGLRXXXXXXXXXXXXXXXXEWLR---DHISYQGKGALTLADGTTHDF 256
            +W I FA G  + G  ++G PHGTG  KY+N          XXXXXXXXXXXXXXXX       +H+S  GKG LT+A+GT H +
Sbjct:  964 DWHITFATGSAYNGQCVQGKPHGTGVCKYTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSNHVSLNGKGTLTMANGTVHAY 1048

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig8604.16731.1 vs.

BLAST of mRNA_E_fasciculatus_S2_contig8604.16731.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 8


Match Name	E-value	Identity	Description
Avl9	7.920e-23	79.07	domain-containing protein n=1 Tax=Ectocarpus silic...	[more]
Avl9	3.580e-22	77.91	domain-containing protein n=1 Tax=Ectocarpus sp. C...	[more]
Uncharacterized	4.870e-12	51.22	protein n=3 Tax=Aphanomyces astaci TaxID=112090 Re...	[more]
Uncharacterized	1.780e-10	46.34	protein (Fragment) n=1 Tax=Aphanomyces astaci TaxI...	[more]
Uncharacterized	5.910e-10	46.34	protein n=2 Tax=Aphanomyces astaci TaxID=112090 Re...	[more]
Uncharacterized	6.430e-10	46.34	protein n=3 Tax=Aphanomyces astaci TaxID=112090 Re...	[more]
UDENN	7.530e-10	46.34	domain-containing protein n=4 Tax=Aphanomyces asta...	[more]
UDENN	5.950e-5	49.41	domain-containing protein n=1 Tax=Aphanomyces inva...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig8604	contig	E_fasciculatus_S2_contig8604:1236..1936 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Properties


Property Name	Value
Stop	0
Start	0
Model size	261
Hectar predicted targeting category	other localisation
Exons	2
Cds size	258

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842518.949274-CDS-E_fasciculatus_S2_contig8604:1235..1358	1696842518.949274-CDS-E_fasciculatus_S2_contig8604:1235..1358	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig8604 1236..1358 +
1696842518.9599795-CDS-E_fasciculatus_S2_contig8604:1800..1935	1696842518.9599795-CDS-E_fasciculatus_S2_contig8604:1800..1935	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig8604 1801..1935 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig8604.16731.1	prot_E_fasciculatus_S2_contig8604.16731.1	Ectocarpus fasciculatus EfasUO2	polypeptide	E_fasciculatus_S2_contig8604 1236..1935 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E_fasciculatus_S2_contig8604:1236..1936+
coding sequence from alignment at E_fasciculatus_S2_contig8604:1236..1936+

protein sequence of mRNA_E_fasciculatus_S2_contig8604.16731.1

>prot_E_fasciculatus_S2_contig8604.16731.1 ID=prot_E_fasciculatus_S2_contig8604.16731.1|Name=mRNA_E_fasciculatus_S2_contig8604.16731.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=86bp
SSDGVANTLRERRSLRRNGPGRRSARHRDLQVLQRGHLHRRRPPTRAGHL
CLRQRGEVRGGVAARSHLLPGERGAYPRGRDYPRLF

mRNA from alignment at E_fasciculatus_S2_contig8604:1236..1936+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E_fasciculatus_S2_contig8604.16731.1 ID=mRNA_E_fasciculatus_S2_contig8604.16731.1|Name=mRNA_E_fasciculatus_S2_contig8604.16731.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=701bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8604:1236..1936+ (Ectocarpus fasciculatus EfasUO2)
TCTTCAGACGGAGTGGCGAATACGCTTCGCGAACGGCGATCACTTCGCCG
GAACGGTCCTGGAAGGCGTTCCGCACGGCACCGGGACCTACAAGTACTCC
AACGGGGACATCTTCACCGGAGGGTGAGATGAGACTTACCATGGTATGCA
AGAGGCGGAAACGGGAAGGGGAGGAGAGGTCGTCGTGTTCAATGAGGTTC
AATGGGTCTCTTTTTGTCATAATTTTTTTCGAGATGGCCTCACGTTGTGT
GAACTAGTCTGAGTTGTGGGTGAAGCTCCGATGTTTTCGGCACTTTCCCT
TCGACTGTGATTATATCCCGAACGGGTAGTCTTCTGTTTTTGTATCTGTT
TTCCTGATAAACTTTCTTGAGCCGCGCACTCGAACATCAACATGGCAAGC
CGGAGTATTGTAGCTGCTTCGTCTCCTTCAAGGTAAAGGTTTTTTGAAAC
AACCGCGAGAAAAGCAAAGCAACCACCTTAATCTTAACCTCAACAACGCC
TTCACCTAACCGTTACAGCACCCCTATGCATGCCTGTCGGCAATACCTCT
ACACAGCTGGGACAGAGGCCTCCGACACGGGCAGGGCATCTGTGTCTTCG
CCAACGGGGAGAAGTTCGAGGGGGAGTGGCTGCGAGATCACATCTCCTAC
CAGGGGAAAGGGGCGCTTACCCTCGCGGACGGGACTACCCACGACTTTTC
G

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8604:1236..1936+

>mRNA_E_fasciculatus_S2_contig8604.16731.1 ID=mRNA_E_fasciculatus_S2_contig8604.16731.1|Name=mRNA_E_fasciculatus_S2_contig8604.16731.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=258bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8604:1236..1936+ (Ectocarpus fasciculatus EfasUO2)
TCTTCAGACGGAGTGGCGAATACGCTTCGCGAACGGCGATCACTTCGCCG
GAACGGTCCTGGAAGGCGTTCCGCACGGCACCGGGACCTACAAGTACTCC
AACGGGGACATCTTCACCGGAGGAGGCCTCCGACACGGGCAGGGCATCTG
TGTCTTCGCCAACGGGGAGAAGTTCGAGGGGGAGTGGCTGCGAGATCACA
TCTCCTACCAGGGGAAAGGGGCGCTTACCCTCGCGGACGGGACTACCCAC
GACTTTTC