|
|
Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 0 |
| Start | 1 |
| Model size | 680 |
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Cds size | 552 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1696842518.8134685-UTR-E_fasciculatus_S2_contig8603:3040..3167 | 1696842518.8134685-UTR-E_fasciculatus_S2_contig8603:3040..3167 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig8603 3041..3167 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1696842518.82988-CDS-E_fasciculatus_S2_contig8603:3167..3641 | 1696842518.82988-CDS-E_fasciculatus_S2_contig8603:3167..3641 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig8603 3168..3641 + |
| 1696842518.843365-CDS-E_fasciculatus_S2_contig8603:4967..5045 | 1696842518.843365-CDS-E_fasciculatus_S2_contig8603:4967..5045 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig8603 4968..5045 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8603.16729.1 >prot_E_fasciculatus_S2_contig8603.16729.1 ID=prot_E_fasciculatus_S2_contig8603.16729.1|Name=mRNA_E_fasciculatus_S2_contig8603.16729.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=184bp
MSMEEALTASRADTAAAREEAVSAREDAAAARERAQATEDALTASRADTV
AAREEAASAKEDAAAAREEAASAREDAAAARKRAQATEDALTASRADTTA
AREDATVAKDDAAATKERAEEDRRELAGAMKGVEATLTAWREETATTTKK
REEDNERMSAQLAEAQTAVMELKADLAPFLAKEA back to topmRNA from alignment at E_fasciculatus_S2_contig8603:3041..5045+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E_fasciculatus_S2_contig8603.16729.1 ID=mRNA_E_fasciculatus_S2_contig8603.16729.1|Name=mRNA_E_fasciculatus_S2_contig8603.16729.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2005bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8603:3041..5045+ (Ectocarpus fasciculatus EfasUO2)
ATGACAGGCCGTCTACAGGTCTCACCCGCGGGGATACCGGTAGAGTACCA
AATCAGGGACGTTGAGAGTGATTGAAACGAAGAGATTAGATTAGCGCCTT
GGGACGGGGATTTCACGCCGGGTTAGGATGAGTATGGAAGAAGCACTCAC
GGCTTCAAGGGCAGACACGGCAGCTGCAAGGGAAGAGGCGGTCTCGGCGA
GGGAAGATGCGGCAGCTGCAAGGGAACGGGCTCAGGCCACGGAAGATGCA
CTCACGGCTTCAAGGGCAGACACTGTAGCTGCAAGGGAAGAGGCGGCCTC
GGCGAAGGAAGATGCGGCAGCTGCAAGGGAAGAGGCGGCCTCTGCGAGGG
AAGATGCGGCAGCTGCAAGGAAACGGGCTCAGGCCACGGAAGATGCGCTC
ACGGCTTCAAGGGCAGACACTACAGCTGCAAGGGAAGATGCGACCGTTGC
GAAGGACGATGCGGCAGCTACAAAGGAACGGGCCGAGGAAGACCGGAGGG
AATTGGCGGGGGCGATGAAAGGCGTTGAAGCTACGCTTACCGCTTGGAGG
GAAGAGACGGCGACCACAACGAAGAAGAGGGAGGAAGACAACGAAAGAAT
GGTGAGGTGACTCGGCGCCTTGAGGGCACCCGTATTGTACTGGGTCATTT
GAGACTCAATACTCGAAGAAGGCGATGGTTCCCATCTACAAGCAACCTGG
GCATTCACCGTGCACACGACTACTGCAGTCCCGACGATCTAGACGCAACG
TGAGGGATTGGCTTGGGAACAATTTTCTGAGTGAGCCTTCCATCCACGCC
AATTTTCGGCGCCTTTGGCTTGTCGCCATGAGGACCTGGCATCCGGTATC
ACAACCAGCATCGTCACTTGATTGATCGCCCCAACGTTTTGTCTGCGGAC
ATTTTCCTCTCTTCGGAACCATCGATTATCAACCGAGAGATACGGTTCTC
AGAAAATAGCCGCAGTTTTTCTATTCGTCGTCGTTTGCGATTGTAGCTTC
TGTTCCACGGTTCCTCAATATATGTAGTGGGGGCGCGGTGACGTACCGCA
TGTACTGCTATGGTTGACGAAGTACTATCTTGTCCTCAATCGCAACCATT
CCAGCCCAACCTGTGGCGCAGGCATCTATACGAATGCCCTCGGTTAGTCG
TACTCACTGGCAATCGGTCCTGACGCATGGAAGAAGTGCCACACTAGTCA
AATTGGTCAAAACGTAACAGCTGATCTACACGCTCCTAGGGAAGACGTGG
TAACACCGACACGAAAAATCGACACTGCAAGAAAGACCACGAGCAGAGAG
GCGGGAGAAAGATACGATGTAGGTGTAACTTAGCTTCACACGAAGAGGGC
GGTCCAGCTGCGGTGTCGCTGTTGGTACCTGACAGGCACACCATCGTCGC
TTGGCCACGGTTCTTGTTTGGCATCGAACCTACTTCTTTCATTCCTTCCA
CGCCTATCAAACGTTTGCTGCTAGAGCGGCGAGGCGGCAGAACTAGGCCT
TCTCTTTTTGGGACCCCACAAACCCGACCCGAGGCTCCCCGAACAAATGT
GTAGGTCTGGGAGATATTCGGAACTCTGCCGCTCACAAAATACGCCAGGA
TACTCGGTAGTCGACAACAATCGCTTCTTTCAATTCATGAAAGACGGAAT
TATTCAGCGCGTCTGTGCTGCGCTGCTCCGCCCACCGCAACAGGATGCTT
GCTTTGGGGGTGCATCCAGTTTCCCCATCGTGTTGTGTTTGCTGATCACG
CAGCCGGGCGTCCGCCACGTACAGGTGGAGTTCCTCCAGCCAAAAGCCAA
ACAATCTGCCTCGTTTCGTTTGTTGTGTAATGTAGCACCCCGGGGCGATC
TCCGTCGAGGCCGTCCTTACCCCCGTTCATTTCAGCAACTCGCCCTTCCT
TCTCTCACTCTCTCCCCTCTTTCCCAGTCGGCGCAGCTTGCTGAAGCACA
AACAGCGGTCATGGAGCTGAAAGCTGACCTTGCCCCTTTTCTTGCCAAGG
AAGCG back to topCoding sequence (CDS) from alignment at E_fasciculatus_S2_contig8603:3041..5045+ >mRNA_E_fasciculatus_S2_contig8603.16729.1 ID=mRNA_E_fasciculatus_S2_contig8603.16729.1|Name=mRNA_E_fasciculatus_S2_contig8603.16729.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=552bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8603:3041..5045+ (Ectocarpus fasciculatus EfasUO2)
ATGAGTATGGAAGAAGCACTCACGGCTTCAAGGGCAGACACGGCAGCTGC
AAGGGAAGAGGCGGTCTCGGCGAGGGAAGATGCGGCAGCTGCAAGGGAAC
GGGCTCAGGCCACGGAAGATGCACTCACGGCTTCAAGGGCAGACACTGTA
GCTGCAAGGGAAGAGGCGGCCTCGGCGAAGGAAGATGCGGCAGCTGCAAG
GGAAGAGGCGGCCTCTGCGAGGGAAGATGCGGCAGCTGCAAGGAAACGGG
CTCAGGCCACGGAAGATGCGCTCACGGCTTCAAGGGCAGACACTACAGCT
GCAAGGGAAGATGCGACCGTTGCGAAGGACGATGCGGCAGCTACAAAGGA
ACGGGCCGAGGAAGACCGGAGGGAATTGGCGGGGGCGATGAAAGGCGTTG
AAGCTACGCTTACCGCTTGGAGGGAAGAGACGGCGACCACAACGAAGAAG
AGGGAGGAAGACAACGAAAGAATGTCGGCGCAGCTTGCTGAAGCACAAAC
AGCGGTCATGGAGCTGAAAGCTGACCTTGCCCCTTTTCTTGCCAAGGAAG
CG back to top
|